Rh7CG320500

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001551
Physical Location & Seq
Reverse (-)
34488572 .. 34491378
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG320500.1

Sequence Viewer

Length: 714 bp
ATGGGAGAGAAAGATACAGTGTGTGTAACTGGTGCCGGAGGCTTTGTGGCATCTTGGGTCGTCAAGCTGCTTCTCTCTCAGGGATACAAGGTTCATGGCACTGCTAGAGACCCAGGTGATGAGAAGAATGCCCATTTGAAGAAACTGGAAAACGCTTCTGAGAATTTGCAACTGTTCAAGGCAGACTTGTTCGACGTTGAAGGTCTTTGTAATGCCATTTCTGGGTGTTCTGGTGTTTTCCATGTTGCCTGCCCTGTTCCATCGGACGAAGTTTCTAACTCTGATGAGAGAGAATTTATCGAACCTGCTGTAAGGGGCACACGGAATGTACTAGATGCATGTATCAAGGCAAAAGTAAAGAGGGTCGTGGTGGTTTCATCTGCTGGTGCTGTTATATACAACCCAAAATGGCCCAAGGATAAACCCATGGATGAAGAATGTTGGTCTGACCCAGAGTATTGCAAGAAAGTTAAGACCCAGTTTGGCAACTATTGTCTTGCCAAGACAATGGCAGAAACTGAAGCTTTGGAGTATGCAAAGAAAAGTGAATTGAGAATCATTACTGTTTGTCCATCCTTTGTTTTTGGTCCAATGCTGCAATCAACATTAAATGCCAGTAACTCATTGCTCATAACTCTTCTAAAAGGTATTCCTCGCGTTTTATCCTGCTTTTCTTTCTCTCTTCCGATGCCTATTGTCTCTGAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

237

Amino Acids

25.92

Weight (kDa)

6.34

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 3 - 139 5.4e-11 NmrA-like family
KR PF08659 6 - 135 4.6e-08 KR domain
Epimerase PF01370 7 - 202 1.1e-26 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 7 - 131 1.8e-07 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 9 - 207 1.7e-20 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 9 - 128 2.5e-14 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 11 - 192 1.1e-16 NAD(P)H-binding
NAD_binding_4 PF07993 76 - 216 1.3e-08 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 1 cut(s) 657
AcsI RAATTY 2 cut(s) 163, 293
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 3 cut(s) 139, 178, 200
AjnI CCWGG 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 2 cut(s) 67, 524
AluI AGCT 2 cut(s) 67, 524
Alw26I GTCTC 2 cut(s) 102, 703
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 2 cut(s) 67, 595
ApoI RAATTY 2 cut(s) 163, 293
AspS9I GGNCC 2 cut(s) 411, 587
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 54, 582
BccI CCATC 2 cut(s) 268, 580
BciT130I CCWGG 1 cut(s) 114
BciVI GTATCC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 102, 703
BfaI CTAG 2 cut(s) 105, 332
BfuAI ACCTGC 1 cut(s) 313
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 2 cut(s) 68, 596
BlsI GCNGC 2 cut(s) 69, 597
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 411, 587
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 3 cut(s) 59, 325, 678
BmuI ACTGGG 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 112, 414, 426
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 4 cut(s) 34, 150, 478, 615
Bse3DI GCAATG 1 cut(s) 623
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 112, 414, 426
BseGI GGATG 2 cut(s) 436, 572
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 2 cut(s) 92, 150
BseNI ACTGG 4 cut(s) 34, 150, 478, 615
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 54, 582
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 102, 703
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 320
Bsp19I CCATGG 1 cut(s) 426
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 91, 151
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 623
BsrI ACTGG 4 cut(s) 34, 150, 478, 615
BssECI CCNNGG 3 cut(s) 112, 414, 426
BssT1I CCWWGG 2 cut(s) 414, 426
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 19, 174, 565
Bst6I CTCTTC 3 cut(s) 642, 687, 699
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 78, 159
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 2 cut(s) 436, 572
BstFNI CGCG 1 cut(s) 657
BstMAI GTCTC 2 cut(s) 102, 703
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 54, 582
BstXI CCANNNNNNTGG 1 cut(s) 508
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 412
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 436, 572
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 24, 99
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 518
Cfr13I GGNCC 2 cut(s) 411, 587
Csp6I GTAC 1 cut(s) 329
CviAII CATG 4 cut(s) 95, 242, 339, 427
CviJI RGCY 4 cut(s) 42, 67, 412, 524
CviKI_1 RGCY 4 cut(s) 42, 67, 412, 524
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 2 cut(s) 78, 159
Eam1104I CTCTTC 3 cut(s) 642, 687, 699
EarI CTCTTC 3 cut(s) 642, 687, 699
Eco130I CCWWGG 2 cut(s) 414, 426
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 414, 426
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 2 cut(s) 414, 426
FaeI CATG 4 cut(s) 98, 245, 342, 430
FaiI YATR 8 cut(s) 96, 243, 340, 395, 397, 428, 534, 632
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 4 cut(s) 94, 241, 338, 426
Fnu4HI GCNGC 2 cut(s) 68, 596
FokI GGATG 2 cut(s) 443, 559
Fsp4HI GCNGC 2 cut(s) 68, 596
FspBI CTAG 2 cut(s) 105, 332
GluI GCNGC 2 cut(s) 68, 596
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 36
Hin1II CATG 4 cut(s) 98, 245, 342, 430
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 1 cut(s) 555
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 6 cut(s) 160, 265, 283, 448, 687, 703
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 3 cut(s) 19, 174, 565
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 169, 338, 462, 536, 598
HpyF3I CTNAG 2 cut(s) 78, 159
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 4 cut(s) 98, 245, 342, 430
Lsp1109I GCAGC 2 cut(s) 54, 582
LweI GCATC 3 cut(s) 59, 325, 678
MaeI CTAG 2 cut(s) 105, 332
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 25, 617
MboII GAAGA 5 cut(s) 136, 151, 446, 629, 674
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 3 cut(s) 163, 293, 548
MnlI CCTC 3 cut(s) 32, 354, 663
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 2 cut(s) 471, 608
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 657
NcoI CCATGG 1 cut(s) 426
NlaIII CATG 4 cut(s) 98, 245, 342, 430
NlaIV GGNNCC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 342
PctI GAATGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 555
PkrI GCNGC 2 cut(s) 69, 597
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 411, 587
PstNI CAGNNNCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 471, 608
SatI GCNGC 2 cut(s) 68, 596
Sau96I GGNCC 2 cut(s) 411, 587
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 320
SetI ASST 8 cut(s) 69, 93, 118, 198, 205, 307, 526, 649
SfaNI GCATC 3 cut(s) 59, 325, 678
SinI GGWCC 1 cut(s) 587
Sse9I AATT 3 cut(s) 163, 293, 548
SspMI CTAG 2 cut(s) 105, 332
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 414, 426
TaaI ACNGT 3 cut(s) 19, 174, 565
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 192, 300
TasI AATT 3 cut(s) 163, 293, 548
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 1 cut(s) 555
Tru1I TTAA 2 cut(s) 471, 608
Tru9I TTAA 2 cut(s) 471, 608
TscAI CASTG 2 cut(s) 24, 106
TseI GCWGC 2 cut(s) 67, 595
TspDTI ATGAA 3 cut(s) 83, 366, 447
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 2 cut(s) 24, 106
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 163, 293
XceI RCATGY 1 cut(s) 342
XspI CTAG 2 cut(s) 105, 332
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.