Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004941.1

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Forward (+)

12792 .. 15096

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004941.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgaaaattttgcttgttgcaatgccaatcggagtccagagtccagatgaggccaaagtgaagagagttgttgttgtgtcgtctatagctgctgttgtaaagaacccgaattggcccaagaatcaagtgaaagacgagagatgttggtctgatccggaatatgttaggtccactaagaattggtattatctttccaaaacacaagcagaagctgcagccttggagtttggaagaagcagtggacttgatgttgtaactgtttgtccttctcttatcatggggccactgttgcaatccactctgaatactagtagctgcctcctgcctatgggattcaaaggcgggtttgagaaggtgggctacaattattggacggtggtggatgctcgtgatttagctgatgcactgcttcttgtatacaagaaatctgaggctggagaaagatacatatgcacagcacatgcaattggggtagaagaagtagtggagaagtacttgaagatttcacatcccaactacaactattctcccgagcttacgcatacgaaggaagaagaggagaagctgagttcggaaaaattggagaggttgggttggagttaccggccattgggggaaactcttattgattccattgaaagctaccagaagattggagtcatggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

5.75

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	605
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	328, 610
AgsI	TTSAA	3 cut(s)	337, 499, 638
AhlI	ACTAGT	1 cut(s)	308
AluBI	AGCT	7 cut(s)	89, 212, 315, 398, 535, 565, 642
AluI	AGCT	7 cut(s)	89, 212, 315, 398, 535, 565, 642
AlwI	GGATC	1 cut(s)	146
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	530
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	4 cut(s)	51, 113, 281, 605
ApeKI	GCWGC	4 cut(s)	89, 212, 215, 315
ApoI	RAATTY	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	114, 168, 281
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BauI	CACGAG	1 cut(s)	387
BbvI	GCAGC	4 cut(s)	76, 199, 227, 302
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	2 cut(s)	84, 213
BisI	GCNGC	4 cut(s)	90, 213, 216, 316
BlsI	GCNGC	4 cut(s)	91, 214, 217, 317
BmcAI	AGTACT	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	3 cut(s)	114, 168, 281
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	2 cut(s)	373, 391
BpmI	CTGGAG	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 610
Bse118I	RCCGGY	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	388, 508
BseLI	CCNNNNNNNGG	2 cut(s)	328, 610
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	420, 557
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	4 cut(s)	76, 199, 227, 302
BshFI	GGCC	4 cut(s)	53, 115, 283, 607
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	155, 604
BslI	CCNNNNNNNGG	2 cut(s)	328, 610
BsnI	GGCC	4 cut(s)	53, 115, 283, 607
BsoBI	CYCGRG	1 cut(s)	530
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	4 cut(s)	53, 115, 283, 607
BspCNI	CTCAG	2 cut(s)	421, 558
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	603
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	151
BssNAI	GTATAC	1 cut(s)	418
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	259, 288, 376
Bst6I	CTCTTC	2 cut(s)	56, 549
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	174, 429, 566
BstF5I	GGATG	2 cut(s)	388, 508
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 289
BstNSI	RCATGY	1 cut(s)	464
BstSFI	CTRYAG	2 cut(s)	84, 213
BstV1I	GCAGC	4 cut(s)	76, 199, 227, 302
BstXI	CCANNNNNNTGG	1 cut(s)	653
BstZ17I	GTATAC	1 cut(s)	418
BsuRI	GGCC	4 cut(s)	53, 115, 283, 607
BtsCI	GGATG	2 cut(s)	388, 508
BtsI	GCAGTG	2 cut(s)	244, 404
BtsIMutI	CAGTG	3 cut(s)	244, 284, 404
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	603
Cfr13I	GGNCC	3 cut(s)	114, 168, 281
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	277, 461, 661
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	174, 429, 566
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	605
Eam1104I	CTCTTC	2 cut(s)	56, 549
EarI	CTCTTC	2 cut(s)	56, 549
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	280, 464, 664
FatI	CATG	3 cut(s)	276, 460, 660
FauI	CCCGC	1 cut(s)	335
FauNDI	CATATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	4 cut(s)	90, 213, 216, 316
FokI	GGATG	2 cut(s)	395, 495
Fsp4HI	GCNGC	4 cut(s)	90, 213, 216, 316
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	4 cut(s)	90, 213, 216, 316
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	4 cut(s)	53, 115, 283, 607
HapII	CCGG	2 cut(s)	155, 604
Hin1II	CATG	3 cut(s)	280, 464, 664
HinfI	GANTC	6 cut(s)	33, 40, 121, 333, 629, 657
HpaII	CCGG	2 cut(s)	155, 604
Hpy166II	GTNNAC	3 cut(s)	171, 242, 418
Hpy188I	TCNGA	5 cut(s)	32, 151, 303, 430, 574
Hpy188III	TCNNGA	5 cut(s)	37, 44, 155, 389, 530
Hpy8I	GTNNAC	3 cut(s)	171, 242, 418
HpyAV	CCTTC	3 cut(s)	276, 346, 541
HpyCH4III	ACNGT	3 cut(s)	259, 288, 376
HpyCH4V	TGCA	6 cut(s)	20, 215, 292, 404, 453, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 289
HpyF3I	CTNAG	3 cut(s)	174, 429, 566
Hsp92II	CATG	3 cut(s)	280, 464, 664
Kpn2I	TCCGGA	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	50, 57, 168, 335, 420, 617, 659
Lsp1109I	GCAGC	4 cut(s)	76, 199, 227, 302
LweI	GCATC	2 cut(s)	373, 391
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	253, 599
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	7 cut(s)	73, 243, 488, 511, 563, 566, 661
MfeI	CAATTG	1 cut(s)	465
MluCI	AATT	6 cut(s)	6, 109, 178, 364, 465, 578
MlyI	GAGTC	3 cut(s)	42, 49, 666
MmeI	TCCRAC	1 cut(s)	575
MnlI	CCTC	5 cut(s)	43, 329, 424, 550, 579
MroI	TCCGGA	1 cut(s)	154
MspI	CCGG	2 cut(s)	155, 604
MunI	CAATTG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	212, 289
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	280, 464, 664
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	121, 333, 629
PkrI	GCNGC	4 cut(s)	91, 214, 217, 317
PleI	GAGTC	3 cut(s)	41, 48, 665
PpsI	GAGTC	3 cut(s)	41, 48, 665
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	3 cut(s)	114, 168, 281
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SatI	GCNGC	4 cut(s)	90, 213, 216, 316
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	3 cut(s)	114, 168, 281
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	3 cut(s)	42, 49, 666
SfaNI	GCATC	2 cut(s)	373, 391
SfcI	CTRYAG	2 cut(s)	84, 213
SinI	GGWCC	1 cut(s)	168
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	6 cut(s)	6, 109, 178, 364, 465, 578
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	259, 288, 376
TasI	AATT	6 cut(s)	6, 109, 178, 364, 465, 578
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	121, 333, 629
TscAI	CASTG	3 cut(s)	244, 291, 411
TseI	GCWGC	4 cut(s)	89, 212, 215, 315
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	244, 291, 411
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.