Rh7BG293800

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001551
Physical Location & Seq
Reverse (-)
27571440 .. 27582270
10831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG293800.1

Sequence Viewer

Length: 984 bp
ATGGCGGGTGAGAACGAAAAAGTGTGCGTAACTGGAGCTGGAGGATTTGCTGCCTCTTGGGTCGTCAAGCTTCTTCTCTCTCAGGACTATCTTGTCCATGGAGCCGTCAGACAACCAGGTGATAGCAAGTACGACCACTTGAACAGGCTTGAGAAAGCATCAGAGAACCTGAAACTGATCAAGGCAGATTTGCTGGACTATGATTCTCTATGTTCCGCAATTTCGGGATGCAGCGGTGTGTTCCATGTTGCCAGCAGTCCTGTACCAACAACCCAAGTAACAAACCCCGAAGCAGAAGTAGTTGAACCAGCTGTGAAGGGAACGCTTAATGTGCTGAAAGCTTGCTTGGAGACCAAGGTGAAGAGAGTTGTTGTTGTGTCTTCTGTAGCTGCTGTTGTGATGAACCCGAACTGGCCCAAGGATCAAGTCAAGGATGAGAGCTGTTGGTCTGATCCTGAATATATTAAAACCACTAGTCTTGAATCCCTGAAAACTTCTAAGAAATGGTATTATACTAGAATTCAGAGCGAGGCTCTGGAGTTTGGAAAAAGAACCGGACTTGAGGTTGTTACTGTTTGTCCTTCTGCCATTTTGGGGCCACTTTTGCAATCTACCCTAACTTCCAGTAACTTGCTCCTGCCTATGGGTCTCAAAGGTGGGTTTGGGTCGTTTGGATACAATTATTGGACTATGGTGGATGTTCGTGACTTAGCTGAAGCACTGCTTCTGGTTTACAAGAAATCTGACGCTGGAGAAAGATATATATGCACATCACATGCAATTGGGGTGGAGGAAGTGGTGGAGAAATACTTGAAGATTTCATATCCCAACTACAATTATTCTGACAAGCTTAGTCACACCGAGGAAGAAGAAGAGAAACTGAGTTCGGAAAAGTTGCAGAAGTTGGGTTGGAGTTACCGACCATTGGAGGAAACTCTAATTGATTCCATTGAAAGCTGCCGGAAGATGGGGGTCATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

327

Amino Acids

36.14

Weight (kDa)

5.46

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 5 - 139 2e-07 NmrA-like family
Epimerase PF01370 8 - 253 2e-19 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 8 - 132 5.9e-08 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 10 - 128 9.6e-14 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 10 - 147 1.5e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 10 - 205 9.1e-06 Male sterility protein
KR PF08659 10 - 136 6.6e-06 KR domain
NAD_binding_10 PF13460 12 - 190 8.2e-14 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AciI CCGC 3 cut(s) 5, 216, 234
AclWI GGATC 2 cut(s) 429, 446
AcsI RAATTY 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 735
AfaI GTAC 2 cut(s) 131, 264
AfiI CCNNNNNNNGG 4 cut(s) 594, 643, 925, 967
AgsI TTSAA 5 cut(s) 142, 305, 482, 814, 953
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 9 cut(s) 38, 70, 311, 341, 389, 441, 713, 850, 957
AluI AGCT 9 cut(s) 38, 70, 311, 341, 389, 441, 713, 850, 957
Alw26I GTCTC 2 cut(s) 344, 653
AlwI GGATC 2 cut(s) 429, 446
AoxI GGCC 2 cut(s) 413, 596
ApeKI GCWGC 4 cut(s) 50, 231, 389, 957
ApoI RAATTY 1 cut(s) 519
AspS9I GGNCC 2 cut(s) 414, 596
AsuHPI GGTGA 3 cut(s) 20, 131, 370
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 4 cut(s) 37, 243, 376, 944
BccI CCATC 1 cut(s) 961
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 668
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 344, 653
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 2 cut(s) 474, 516
BfmI CTRYAG 1 cut(s) 384
BfuI GTATCC 1 cut(s) 668
BisI GCNGC 4 cut(s) 51, 232, 390, 958
BlsI GCNGC 4 cut(s) 52, 233, 391, 959
Bme1390I CCNGG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 414, 596
BmiI GGNNCC 2 cut(s) 103, 597
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 167, 218
BpiI GAAGAC 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 517, 549
BpmI CTGGAG 4 cut(s) 54, 60, 557, 771
BpuEI CTTGAG 2 cut(s) 170, 581
BsaI GGTCTC 2 cut(s) 344, 653
BsaJI CCNNGG 4 cut(s) 97, 354, 417, 861
BsaWI WCCGGW 1 cut(s) 554
Bsc4I CCNNNNNNNGG 4 cut(s) 594, 643, 925, 967
Bse1I ACTGG 3 cut(s) 37, 416, 624
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 97, 354, 417, 861
BseGI GGATG 3 cut(s) 233, 439, 703
BseLI CCNNNNNNNGG 4 cut(s) 594, 643, 925, 967
BseMII CTCAG 2 cut(s) 95, 872
BseNI ACTGG 3 cut(s) 37, 416, 624
BseXI GCAGC 4 cut(s) 37, 243, 376, 944
BshFI GGCC 2 cut(s) 415, 598
BsiSI CCGG 2 cut(s) 555, 961
BslI CCNNNNNNNGG 4 cut(s) 594, 643, 925, 967
BsmAI GTCTC 2 cut(s) 344, 653
BsnI GGCC 2 cut(s) 415, 598
Bso31I GGTCTC 2 cut(s) 344, 653
Bsp143I GATC 3 cut(s) 177, 421, 451
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 3 cut(s) 5, 216, 234
BspANI GGCC 2 cut(s) 415, 598
BspCNI CTCAG 2 cut(s) 94, 873
BspLI GGNNCC 2 cut(s) 103, 597
BspPI GGATC 2 cut(s) 429, 446
BspTNI GGTCTC 2 cut(s) 344, 653
BsrI ACTGG 3 cut(s) 37, 416, 624
BssECI CCNNGG 4 cut(s) 97, 354, 417, 861
BssMI GATC 3 cut(s) 177, 421, 451
BssT1I CCWWGG 3 cut(s) 97, 354, 417
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 2 cut(s) 356, 867
BstC8I GCNNGC 2 cut(s) 253, 343
BstDEI CTNAG 5 cut(s) 81, 498, 709, 851, 881
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 233, 439, 703
BstKTI GATC 3 cut(s) 180, 424, 454
BstMAI GTCTC 2 cut(s) 344, 653
BstMBI GATC 3 cut(s) 177, 421, 451
BstMWI GCNNNNNNNGC 2 cut(s) 331, 604
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 4 cut(s) 37, 243, 376, 944
BstV2I GAAGAC 1 cut(s) 372
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 2 cut(s) 415, 598
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 3 cut(s) 233, 439, 703
BtsI GCAGTG 1 cut(s) 719
BtsIMutI CAGTG 1 cut(s) 719
Cac8I GCNNGC 2 cut(s) 253, 343
Cfr13I GGNCC 2 cut(s) 414, 596
CseI GACGC 1 cut(s) 755
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 130, 263
CspCI CAANNNNNGTGG 4 cut(s) 460, 495, 768, 803
CviAII CATG 4 cut(s) 98, 245, 776, 976
CviQI GTAC 2 cut(s) 130, 263
DdeI CTNAG 5 cut(s) 81, 498, 709, 851, 881
DpnI GATC 3 cut(s) 179, 423, 453
DpnII GATC 3 cut(s) 177, 421, 451
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 356, 867
EarI CTCTTC 2 cut(s) 356, 867
Eco130I CCWWGG 3 cut(s) 97, 354, 417
Eco31I GGTCTC 2 cut(s) 344, 653
Eco57I CTGAAG 1 cut(s) 735
EcoRI GAATTC 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 97, 354, 417
ErhI CCWWGG 3 cut(s) 97, 354, 417
FaeI CATG 4 cut(s) 101, 248, 779, 979
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 4 cut(s) 97, 244, 775, 975
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 51, 232, 390, 958
FokI GGATG 3 cut(s) 240, 446, 710
Fsp4HI GCNGC 4 cut(s) 51, 232, 390, 958
FspBI CTAG 2 cut(s) 474, 516
GluI GCNGC 4 cut(s) 51, 232, 390, 958
GsuI CTGGAG 4 cut(s) 54, 60, 557, 771
HaeIII GGCC 2 cut(s) 415, 598
HapII CCGG 2 cut(s) 555, 961
HgaI GACGC 1 cut(s) 755
Hin1II CATG 4 cut(s) 101, 248, 779, 979
HindIII AAGCTT 3 cut(s) 68, 339, 848
HinfI GANTC 3 cut(s) 203, 482, 944
HpaII CCGG 2 cut(s) 555, 961
HphI GGTGA 3 cut(s) 20, 131, 370
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 7 cut(s) 110, 163, 451, 525, 745, 844, 889
Hpy188III TCNNGA 6 cut(s) 83, 225, 455, 479, 536, 704
Hpy8I GTNNAC 1 cut(s) 733
HpyAV CCTTC 2 cut(s) 310, 591
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4V TGCA 5 cut(s) 231, 607, 768, 779, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 604
HpyF3I CTNAG 5 cut(s) 81, 498, 709, 851, 881
Hsp92II CATG 4 cut(s) 101, 248, 779, 979
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 177, 421, 451
LmnI GCTCC 3 cut(s) 35, 101, 639
Lsp1109I GCAGC 4 cut(s) 37, 243, 376, 944
LweI GCATC 2 cut(s) 167, 218
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 2 cut(s) 474, 516
MaeIII GTNAC 7 cut(s) 28, 277, 568, 626, 704, 854, 914
MalI GATC 3 cut(s) 179, 423, 453
MboI GATC 3 cut(s) 177, 421, 451
MboII GAAGA 8 cut(s) 65, 372, 373, 826, 878, 881, 884, 976
MfeI CAATTG 1 cut(s) 780
MluCI AATT 6 cut(s) 219, 519, 679, 780, 835, 939
MmeI TCCRAC 1 cut(s) 890
MnlI CCTC 7 cut(s) 35, 64, 523, 556, 784, 856, 922
MseI TTAA 2 cut(s) 327, 465
MspA1I CMGCKG 2 cut(s) 234, 311
MspI CCGG 2 cut(s) 555, 961
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 331, 604
NcoI CCATGG 1 cut(s) 97
NdeII GATC 3 cut(s) 177, 421, 451
NlaIII CATG 4 cut(s) 101, 248, 779, 979
NlaIV GGNNCC 2 cut(s) 103, 597
NmuCI GTSAC 2 cut(s) 704, 854
NspI RCATGY 1 cut(s) 779
PfeI GAWTC 3 cut(s) 203, 482, 944
PkrI GCNGC 4 cut(s) 52, 233, 391, 959
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 103, 597
PspPI GGNCC 2 cut(s) 414, 596
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 2 cut(s) 131, 264
RsaNI GTAC 2 cut(s) 130, 263
SaqAI TTAA 2 cut(s) 327, 465
SatI GCNGC 4 cut(s) 51, 232, 390, 958
Sau3AI GATC 3 cut(s) 177, 421, 451
Sau96I GGNCC 2 cut(s) 414, 596
ScrFI CCNGG 1 cut(s) 117
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 2 cut(s) 167, 218
SfcI CTRYAG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 149, 560
SmoI CTYRAG 2 cut(s) 149, 560
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 6 cut(s) 219, 519, 679, 780, 835, 939
SsiI CCGC 3 cut(s) 5, 216, 234
SspMI CTAG 2 cut(s) 474, 516
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 3 cut(s) 97, 354, 417
TaaI ACNGT 1 cut(s) 574
TasI AATT 6 cut(s) 219, 519, 679, 780, 835, 939
TfiI GAWTC 3 cut(s) 203, 482, 944
Tru1I TTAA 2 cut(s) 327, 465
Tru9I TTAA 2 cut(s) 327, 465
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 2 cut(s) 704, 854
TseI GCWGC 4 cut(s) 50, 231, 389, 957
Tsp45I GTSAC 2 cut(s) 704, 854
TspDTI ATGAA 2 cut(s) 416, 810
TspRI CASTG 1 cut(s) 726
XapI RAATTY 1 cut(s) 519
XceI RCATGY 1 cut(s) 779
XspI CTAG 2 cut(s) 474, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.