pycom06g00340

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001551
Physical Location & Seq
Forward (+)
325066 .. 328660
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00340.4

Sequence Viewer

Length: 981 bp
ATGGCGGGTGAGGCGGCTGATCAGAAAGAAAAAGTATGCGTGACTGGAGCTGGAGGATTTACTGCCTCTTGGGTCGTCAACCTCCTTCTCTCCAGGGACTATGTTGTTCATGGAACTGTCAGGCAACCAGGAGACATCAAGTATGCTCACTTGAACAAGCTTGAGAAAGCATCAGTGAACCTCAAACTGTTCAAGGCAGATTTGTTGGACTACGACTCTCTTCGTTTGGCCATTGAAGGTTGCAGCGGAGTCTTCCATGTTGCCAGCCCTGTACCCAATTCTCTTAATGATTCAGACCCTGAGGAGTTTCTTGAACCAGCAATAAAGGGAACGCTGAATGTACTCAAGGCTTGCAAAAAGGCCAAAGTGAAGAGAGTTGTAGTTGTGTCGTCCATAGCCGCCGTCGTTATGAACCCGGAGTGGCCCAAGGATCAACTCAAGGACGAGACTTGTTGGTCCGTTCCCGAATATATAAAAACAACCAAGAAATGGTACTATCTTTCGAAAACAGAAGCAGAACGCGAGGCTCTGGAGTTTGGAAAAAGAAATGGACTTGAGGTTGTGACTGTTTGTCCTTCTATCATTTTGGGGCCAATTTTGCAATCCACTCTCAATTCCAGTAGCTCTCTCATTGTTGCGACTATAATTGGTGGTCTTGAGTCCTTGGGATGCAATTACTGGACGTTCGTGGATGTTCGTGATTTAGCTGACGCGCTGCTTCTTGCATACAACAAGCCTGAGGCTGCAGGAGAAAGATACTTATGCAATTCACACTCAATTGGCATACGAGATGTGGTGGAGAAATACTTAAGGCCTACATATCCCTACTACAAGTACCCCAAGAACCTTACCTATGCAGAGGAAGAAGTTCAACACCTTAGTTCCGAAAAATTGCAGAAGTTGGGTTGGACTTTCCGGCCAGTTGAGGAAACGCTTAATGATTCTATTGAAAGCTACCGGAAGGCTGGAATCGTGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

327

Amino Acids

36.24

Weight (kDa)

6.27

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 454
AccB7I CCANNNNNTGG 1 cut(s) 489
AccII CGCG 2 cut(s) 522, 713
AciI CCGC 4 cut(s) 5, 14, 246, 399
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 2 cut(s) 228, 917
AfaI GTAC 4 cut(s) 273, 342, 494, 836
AfiI CCNNNNNNNGG 1 cut(s) 489
AflII CTTAAG 1 cut(s) 808
AgsI TTSAA 6 cut(s) 154, 193, 236, 314, 872, 950
AhdI GACNNNNNGTC 1 cut(s) 570
AjnI CCWGG 2 cut(s) 92, 127
AluBI AGCT 5 cut(s) 50, 160, 624, 707, 954
AluI AGCT 5 cut(s) 50, 160, 624, 707, 954
Alw26I GTCTC 2 cut(s) 126, 440
AlwI GGATC 1 cut(s) 438
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 6 cut(s) 228, 360, 422, 590, 812, 917
ApeKI GCWGC 3 cut(s) 243, 715, 743
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 423, 456, 590
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 456
AxyI CCTNAGG 2 cut(s) 300, 738
BalI TGGCCA 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 244
BbvI GCAGC 3 cut(s) 255, 702, 730
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 2 cut(s) 94, 129
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 126, 440
BfmI CTRYAG 1 cut(s) 744
BfrI CTTAAG 1 cut(s) 808
BisI GCNGC 5 cut(s) 15, 244, 399, 716, 744
BlsI GCNGC 5 cut(s) 16, 245, 400, 717, 745
Bme1390I CCNGG 3 cut(s) 94, 129, 416
Bme18I GGWCC 1 cut(s) 456
BmeRI GACNNNNNGTC 1 cut(s) 570
BmgT120I GGNCC 3 cut(s) 423, 456, 590
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 3 cut(s) 94, 129, 416
BmsI GCATC 2 cut(s) 179, 659
BpiI GAAGAC 1 cut(s) 244
BpmI CTGGAG 4 cut(s) 66, 72, 76, 551
Bpu14I TTCGAA 1 cut(s) 503
BpuEI CTTGAG 5 cut(s) 182, 329, 422, 575, 677
BpuMI CCSGG 1 cut(s) 416
BsaJI CCNNGG 3 cut(s) 93, 426, 663
BsaWI WCCGGW 1 cut(s) 957
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse1I ACTGG 4 cut(s) 49, 618, 683, 920
Bse21I CCTNAGG 2 cut(s) 300, 738
BseBI CCWGG 2 cut(s) 94, 129
BseDI CCNNGG 3 cut(s) 93, 426, 663
BseGI GGATG 2 cut(s) 674, 697
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 291, 729
BseNI ACTGG 4 cut(s) 49, 618, 683, 920
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 3 cut(s) 255, 702, 730
Bsh1236I CGCG 2 cut(s) 522, 713
BshFI GGCC 6 cut(s) 230, 362, 424, 592, 814, 919
BsiSI CCGG 3 cut(s) 416, 916, 958
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 2 cut(s) 126, 440
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 6 cut(s) 230, 362, 424, 592, 814, 919
Bsp119I TTCGAA 1 cut(s) 503
Bsp143I GATC 2 cut(s) 19, 430
BspACI CCGC 4 cut(s) 5, 14, 246, 399
BspANI GGCC 6 cut(s) 230, 362, 424, 592, 814, 919
BspCNI CTCAG 2 cut(s) 292, 730
BspFNI CGCG 2 cut(s) 522, 713
BspLI GGNNCC 1 cut(s) 591
BspMAI CTGCAG 1 cut(s) 748
BspPI GGATC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 503
BspTI CTTAAG 1 cut(s) 808
BsrI ACTGG 4 cut(s) 49, 618, 683, 920
BssECI CCNNGG 3 cut(s) 93, 426, 663
BssMI GATC 2 cut(s) 19, 430
BssT1I CCWWGG 2 cut(s) 426, 663
Bst2UI CCWGG 2 cut(s) 94, 129
Bst4CI ACNGT 3 cut(s) 118, 189, 568
Bst6I CTCTTC 2 cut(s) 225, 365
BstAFI CTTAAG 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 265, 352
BstDEI CTNAG 3 cut(s) 300, 738, 878
BstF5I GGATG 2 cut(s) 674, 697
BstFNI CGCG 2 cut(s) 522, 713
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 2 cut(s) 22, 433
BstMAI GTCTC 2 cut(s) 126, 440
BstMBI GATC 2 cut(s) 19, 430
BstMWI GCNNNNNNNGC 2 cut(s) 11, 598
BstNI CCWGG 2 cut(s) 94, 129
BstSCI CCNGG 3 cut(s) 92, 127, 414
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 2 cut(s) 522, 713
BstV1I GCAGC 3 cut(s) 255, 702, 730
BstV2I GAAGAC 1 cut(s) 244
Bsu36I CCTNAGG 2 cut(s) 300, 738
BsuRI GGCC 6 cut(s) 230, 362, 424, 592, 814, 919
BtsCI GGATG 2 cut(s) 674, 697
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 265, 352
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 423, 456, 590
CseI GACGC 1 cut(s) 719
Csp6I GTAC 4 cut(s) 272, 341, 493, 835
CviAII CATG 2 cut(s) 110, 257
CviQI GTAC 4 cut(s) 272, 341, 493, 835
DdeI CTNAG 3 cut(s) 300, 738, 878
DpnI GATC 2 cut(s) 21, 432
DpnII GATC 2 cut(s) 19, 430
DrdI GACNNNNNNGTC 1 cut(s) 454
DriI GACNNNNNGTC 1 cut(s) 570
DseDI GACNNNNNNGTC 1 cut(s) 454
EaeI YGGCCR 2 cut(s) 228, 917
Eam1104I CTCTTC 2 cut(s) 225, 365
Eam1105I GACNNNNNGTC 1 cut(s) 570
EarI CTCTTC 2 cut(s) 225, 365
Eco130I CCWWGG 2 cut(s) 426, 663
Eco147I AGGCCT 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 456
Eco81I CCTNAGG 2 cut(s) 300, 738
EcoRII CCWGG 2 cut(s) 92, 127
EcoT14I CCWWGG 2 cut(s) 426, 663
ErhI CCWWGG 2 cut(s) 426, 663
FaeI CATG 2 cut(s) 113, 260
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 109, 256
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 5 cut(s) 15, 244, 399, 716, 744
FokI GGATG 2 cut(s) 681, 704
Fsp4HI GCNGC 5 cut(s) 15, 244, 399, 716, 744
GlaI GCGC 1 cut(s) 714
GluI GCNGC 5 cut(s) 15, 244, 399, 716, 744
GsuI CTGGAG 4 cut(s) 66, 72, 76, 551
HaeIII GGCC 6 cut(s) 230, 362, 424, 592, 814, 919
HapII CCGG 3 cut(s) 416, 916, 958
HgaI GACGC 1 cut(s) 719
HhaI GCGC 1 cut(s) 715
Hin1II CATG 2 cut(s) 113, 260
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 215, 249, 290, 659, 941, 969
HpaII CCGG 3 cut(s) 416, 916, 958
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 79, 178
Hpy188I TCNGA 3 cut(s) 24, 295, 886
Hpy188III TCNNGA 5 cut(s) 311, 464, 530, 656, 698
Hpy8I GTNNAC 2 cut(s) 79, 178
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 4 cut(s) 95, 230, 585, 955
HpyCH4III ACNGT 3 cut(s) 118, 189, 568
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 9 cut(s) 243, 354, 601, 672, 725, 746, 765, 857, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 598
HpyF3I CTNAG 3 cut(s) 300, 738, 878
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 2 cut(s) 113, 260
HspAI GCGC 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 19, 430
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 3 cut(s) 255, 702, 730
LweI GCATC 2 cut(s) 179, 659
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 2 cut(s) 40, 562
MalI GATC 2 cut(s) 21, 432
MboI GATC 2 cut(s) 19, 430
MboII GAAGA 4 cut(s) 212, 244, 382, 875
MfeI CAATTG 1 cut(s) 777
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 8 cut(s) 277, 594, 613, 645, 673, 766, 777, 890
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 3 cut(s) 209, 258, 668
MmeI TCCRAC 2 cut(s) 186, 887
Mox20I TGGCCA 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 867
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 285, 809, 936
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 808
MspI CCGG 3 cut(s) 416, 916, 958
MspR9I CCNGG 3 cut(s) 94, 129, 416
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 2 cut(s) 94, 129
MvnI CGCG 2 cut(s) 522, 713
MwoI GCNNNNNNNGC 2 cut(s) 11, 598
NciI CCSGG 1 cut(s) 416
NdeII GATC 2 cut(s) 19, 430
NlaIII CATG 2 cut(s) 113, 260
NlaIV GGNNCC 1 cut(s) 591
NmuCI GTSAC 2 cut(s) 40, 562
NspV TTCGAA 1 cut(s) 503
PceI AGGCCT 1 cut(s) 814
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 3 cut(s) 290, 941, 969
PflMI CCANNNNNTGG 1 cut(s) 489
PkrI GCNGC 5 cut(s) 16, 245, 400, 717, 745
PleI GAGTC 3 cut(s) 209, 257, 667
PpsI GAGTC 3 cut(s) 209, 257, 667
Psp6I CCWGG 2 cut(s) 92, 127
PspGI CCWGG 2 cut(s) 92, 127
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 3 cut(s) 423, 456, 590
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 1 cut(s) 299
RsaI GTAC 4 cut(s) 273, 342, 494, 836
RsaNI GTAC 4 cut(s) 272, 341, 493, 835
SaqAI TTAA 3 cut(s) 285, 809, 936
SatI GCNGC 5 cut(s) 15, 244, 399, 716, 744
Sau3AI GATC 2 cut(s) 19, 430
Sau96I GGNCC 3 cut(s) 423, 456, 590
SchI GAGTC 3 cut(s) 209, 258, 668
ScrFI CCNGG 3 cut(s) 94, 129, 416
SfaNI GCATC 2 cut(s) 179, 659
SfcI CTRYAG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 1 cut(s) 456
SmlI CTYRAG 6 cut(s) 161, 344, 437, 554, 656, 808
SmoI CTYRAG 6 cut(s) 161, 344, 437, 554, 656, 808
Sse9I AATT 8 cut(s) 277, 594, 613, 645, 673, 766, 777, 890
SseBI AGGCCT 1 cut(s) 814
SsiI CCGC 4 cut(s) 5, 14, 246, 399
StuI AGGCCT 1 cut(s) 814
StyD4I CCNGG 3 cut(s) 92, 127, 414
StyI CCWWGG 2 cut(s) 426, 663
TaaI ACNGT 3 cut(s) 118, 189, 568
TaiI ACGT 1 cut(s) 686
TaqI TCGA 1 cut(s) 503
TasI AATT 8 cut(s) 277, 594, 613, 645, 673, 766, 777, 890
TatI WGTACW 1 cut(s) 340
TauI GCSGC 2 cut(s) 17, 401
TfiI GAWTC 3 cut(s) 290, 941, 969
Tru1I TTAA 3 cut(s) 285, 809, 936
Tru9I TTAA 3 cut(s) 285, 809, 936
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 40, 562
TseI GCWGC 3 cut(s) 243, 715, 743
Tsp45I GTSAC 2 cut(s) 40, 562
TspDTI ATGAA 2 cut(s) 98, 425
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 489
Vha464I CTTAAG 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.