Rroxscaffold_5G00345210

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001551
Physical Location & Seq
Reverse (-)
15532301 .. 15536282
3982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345210.1

Sequence Viewer

Length: 447 bp
ATGAACCCGAACCGGCCCAAGGATAAAGTCAAGGATGAAAGTCGTTGGTCGATCCTGAAAATATTAAAACCACTAGTCTTGAATCCCCGAAAACTTCTAAGAAATGGTTTTATATTTCGAAAACACAAGCGAGAGAGCGAGGCTCGGAGTTTGGAAAAAGAACTGGACTTGAGGTTGTTACCGTTTGTCCTTCGCCATTTTGGGTCCACTCTTGCAATCTACCCTAAATTCCGTACCTTGCTCCCGCCTATGGGTCTCAAAGGTGGGTTTGGGTTGTTTGGATACAATTATTGGACCTTGGTGGATGTTCGTGACTTAGCTGAAGCATCGCTTATGGTTTACAAGAAATCCGACGCCGGAGAAAGATATATATGCACATCACATGCAATTGGGGTAAGCTGCTTTGCTTCAACTGTCAATAACAAGATCAATCGAACTAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

148

Amino Acids

17.04

Weight (kDa)

10.05

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 3 cut(s) 19, 250, 251
AgsI TTSAA 2 cut(s) 82, 411
AhlI ACTAGT 2 cut(s) 73, 437
AluBI AGCT 2 cut(s) 320, 399
AluI AGCT 2 cut(s) 320, 399
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 15, 204, 294
AsuII TTCGAA 1 cut(s) 118
AvaII GGWCC 2 cut(s) 204, 294
BbvI GCAGC 1 cut(s) 386
BciVI GTATCC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 260
BcuI ACTAGT 2 cut(s) 73, 437
BfaI CTAG 3 cut(s) 74, 438, 445
BfuI GTATCC 1 cut(s) 275
BisI GCNGC 1 cut(s) 400
BlsI GCNGC 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 204, 294
BmgT120I GGNCC 3 cut(s) 15, 204, 294
BmiI GGNNCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 335
BplI GAGNNNNNCTC 2 cut(s) 127, 159
Bpu14I TTCGAA 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 18, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 250, 251
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 18, 297
BseGI GGATG 2 cut(s) 40, 310
BseLI CCNNNNNNNGG 3 cut(s) 19, 250, 251
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 386
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 13, 357
BslI CCNNNNNNNGG 3 cut(s) 19, 250, 251
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 118
Bsp143I GATC 2 cut(s) 51, 426
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 18, 297
BssMI GATC 2 cut(s) 51, 426
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 2 cut(s) 18, 297
Bst4CI ACNGT 2 cut(s) 183, 415
BstACI GRCGYC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 98, 316
BstF5I GGATG 2 cut(s) 40, 310
BstKTI GATC 2 cut(s) 54, 429
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 51, 426
BstNSI RCATGY 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 386
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 40, 310
Cfr10I RCCGGY 1 cut(s) 12
Cfr13I GGNCC 3 cut(s) 15, 204, 294
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 1 cut(s) 383
CviJI RGCY 4 cut(s) 16, 143, 320, 399
CviKI_1 RGCY 4 cut(s) 16, 143, 320, 399
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 98, 316
DpnI GATC 2 cut(s) 53, 428
DpnII GATC 2 cut(s) 51, 426
Eco130I CCWWGG 2 cut(s) 18, 297
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 204, 294
Eco57I CTGAAG 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 18, 297
ErhI CCWWGG 2 cut(s) 18, 297
FaeI CATG 1 cut(s) 386
FaiI YATR 7 cut(s) 113, 251, 335, 369, 371, 373, 384
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 1 cut(s) 382
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 400
FokI GGATG 2 cut(s) 47, 317
Fsp4HI GCNGC 1 cut(s) 400
FspBI CTAG 3 cut(s) 74, 438, 445
GluI GCNGC 1 cut(s) 400
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 13, 357
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 386
HinfI GANTC 1 cut(s) 82
HpaII CCGG 2 cut(s) 13, 357
Hpy166II GTNNAC 2 cut(s) 207, 340
Hpy188I TCNGA 2 cut(s) 147, 352
Hpy188III TCNNGA 3 cut(s) 55, 79, 311
Hpy8I GTNNAC 2 cut(s) 207, 340
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 183, 415
HpyCH4V TGCA 3 cut(s) 215, 375, 386
HpyF3I CTNAG 2 cut(s) 98, 316
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 386
Kzo9I GATC 2 cut(s) 51, 426
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 4 cut(s) 26, 68, 149, 370
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 1 cut(s) 335
MaeI CTAG 3 cut(s) 74, 438, 445
MaeIII GTNAC 3 cut(s) 177, 311, 440
MalI GATC 2 cut(s) 53, 428
MboI GATC 2 cut(s) 51, 426
MfeI CAATTG 1 cut(s) 387
MluCI AATT 3 cut(s) 227, 286, 387
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 2 cut(s) 133, 165
MseI TTAA 1 cut(s) 65
MspI CCGG 2 cut(s) 13, 357
MunI CAATTG 1 cut(s) 387
NdeII GATC 2 cut(s) 51, 426
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 311, 440
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 1 cut(s) 118
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 3 cut(s) 15, 204, 294
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 1 cut(s) 400
Sau3AI GATC 2 cut(s) 51, 426
Sau96I GGNCC 3 cut(s) 15, 204, 294
SetI ASST 6 cut(s) 176, 239, 265, 299, 322, 401
SfaNI GCATC 1 cut(s) 335
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 2 cut(s) 204, 294
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SpeI ACTAGT 2 cut(s) 73, 437
Sse9I AATT 3 cut(s) 227, 286, 387
SsiI CCGC 1 cut(s) 245
SspI AATATT 1 cut(s) 63
SspMI CTAG 3 cut(s) 74, 438, 445
StyI CCWWGG 2 cut(s) 18, 297
TaaI ACNGT 2 cut(s) 183, 415
TaqI TCGA 3 cut(s) 50, 118, 433
TasI AATT 3 cut(s) 227, 286, 387
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseFI GTSAC 2 cut(s) 311, 440
TseI GCWGC 1 cut(s) 399
Tsp45I GTSAC 2 cut(s) 311, 440
TspDTI ATGAA 2 cut(s) 17, 51
TspGWI ACGGA 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 204, 294
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 386
XspI CTAG 3 cut(s) 74, 438, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.