Rmu_sc0003814.1_g000008

Cinnamoyl-CoA reductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003814.1
Physical Location & Seq
Forward (+)
25483 .. 25866
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003814.1_g000008.1.cds

Sequence Viewer

Length: 300 bp
atgggagagaaagatacagtgtgtgtaactggtgccggaggctttgtggcatcttgggtcgtcaagctgcttctctctcaaggatacaaggttcatggcaccgctagagacccaggtgatgagaagaatgcccatttgaagaaactggaaaacgcttctgagaatttgcaactgttcaaggcagacttgttcgacgttgaaggtctttgtaatgccatttctgggtgttctggtgttttccatgttgcctgccctgttccatcggacgaagtttctaactctgatgaggcaagattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

10.53

Weight (kDa)

5.0

Isoelectric Point (pI)

15.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 98
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 3 cut(s) 139, 178, 200
AjnI CCWGG 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 128
BanI GGYRCC 2 cut(s) 32, 98
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 114
BciVI GTATCC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 34, 100
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 34, 150
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 34, 150
BseXI GCAGC 1 cut(s) 54
BshNI GGYRCC 2 cut(s) 32, 98
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 102
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 34, 100
BspT107I GGYRCC 2 cut(s) 32, 98
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 34, 150
BssECI CCNNGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 19, 174
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 54
BsuI GTATCC 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 250
CviAII CATG 2 cut(s) 95, 242
CviJI RGCY 2 cut(s) 42, 67
CviKI_1 RGCY 2 cut(s) 42, 67
DdeI CTNAG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 98, 245
FaiI YATR 2 cut(s) 96, 243
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 2 cut(s) 94, 241
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 105
GluI GCNGC 1 cut(s) 68
HapII CCGG 1 cut(s) 36
Hin1II CATG 2 cut(s) 98, 245
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 3 cut(s) 160, 265, 283
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 19, 174
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 98, 245
LpnPI CCDG 9 cut(s) 15, 49, 99, 126, 131, 207, 216, 262, 267
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 2 cut(s) 136, 151
MluCI AATT 1 cut(s) 163
MnlI CCTC 2 cut(s) 32, 280
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 114
NlaIII CATG 2 cut(s) 98, 245
NlaIV GGNNCC 2 cut(s) 34, 100
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 34, 100
SatI GCNGC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 114
SetI ASST 5 cut(s) 69, 93, 118, 198, 205
SfaNI GCATC 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 19, 174
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 163
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.