Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Reverse (-)

34964386 .. 34964819

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG303200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGGATGCGTATGAAACAGTATGTGTAACTGGAGCCGGAGGGTTTGCTGCCTCCTGGATTGTCAAGCTTCTACTCTCCAACAACTATGTCGTCCATGGAACCGTCAGACAACCAGGGGATAGCAAGTATGATCACTTGAACAAGCTGGATAGATCACCGGAGAACCTGAAGCTGTTCAAGGCAGATTTGCTGGATTATGAGTCTCTGAGATTGGCGATTTCAGGATGCAGCGGAGTGTTCCACGTGGCCAGTCCTGGTACCTTTTCCAACTGCCATAACAGACCCCGAAGCAGATGTACCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

8.4

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	6 - 85	8.1e-07	NmrA-like family
Epimerase	PF01370	8 - 96	1.5e-09	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	10 - 86	1.3e-09	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	12 - 87	1.2e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	2 cut(s)	5, 234
AcoI	YGGCCR	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	262, 301
AgsI	TTSAA	2 cut(s)	142, 181
AjnI	CCWGG	3 cut(s)	56, 115, 256
AluBI	AGCT	3 cut(s)	70, 148, 175
AluI	AGCT	3 cut(s)	70, 148, 175
Alw26I	GTCTC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	50, 231
Asp700I	GAANNNNTTC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	260
BarI	GAAGNNNNNNTAC	1 cut(s)	283
BbrPI	CACGTG	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	37, 243
BciT130I	CCWGG	3 cut(s)	58, 117, 258
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	51, 232
BlsI	GCNGC	2 cut(s)	52, 233
Bme1390I	CCNGG	3 cut(s)	58, 117, 258
BmiI	GGNNCC	3 cut(s)	37, 103, 262
BmrFI	CCNGG	3 cut(s)	58, 117, 258
BmsI	GCATC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	97, 116
BsaWI	WCCGGW	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	37, 252
BseBI	CCWGG	3 cut(s)	58, 117, 258
BseDI	CCNNGG	2 cut(s)	97, 116
BseGI	GGATG	2 cut(s)	13, 233
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	37, 252
BseXI	GCAGC	2 cut(s)	37, 243
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	39, 161
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	133, 155
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	5, 234
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	37, 103, 262
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	37, 252
BssECI	CCNNGG	2 cut(s)	97, 116
BssMI	GATC	2 cut(s)	133, 155
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	3 cut(s)	58, 117, 258
Bst4CI	ACNGT	2 cut(s)	22, 106
BstBAI	YACGTR	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	13, 233
BstKTI	GATC	2 cut(s)	136, 158
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	133, 155
BstNI	CCWGG	3 cut(s)	58, 117, 258
BstSCI	CCNGG	3 cut(s)	56, 115, 256
BstV1I	GCAGC	2 cut(s)	37, 243
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	13, 233
Csp6I	GTAC	2 cut(s)	261, 300
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	5 cut(s)	38, 70, 148, 175, 251
CviKI_1	RGCY	5 cut(s)	38, 70, 148, 175, 251
CviQI	GTAC	2 cut(s)	261, 300
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	2 cut(s)	135, 157
DpnII	GATC	2 cut(s)	133, 155
EaeI	YGGCCR	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	56, 115, 256
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	101
FaiI	YATR	7 cut(s)	15, 25, 90, 99, 132, 201, 279
FatI	CATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	51, 232
FokI	GGATG	2 cut(s)	20, 240
Fsp4HI	GCNGC	2 cut(s)	51, 232
GluI	GCNGC	2 cut(s)	51, 232
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	39, 161
Hin1II	CATG	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	2 cut(s)	39, 161
HphI	GGTGA	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	110, 210
Hpy188III	TCNNGA	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	22, 106
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	101
KpnI	GGTACC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	133, 155
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	2 cut(s)	37, 243
LweI	GCATC	1 cut(s)	218
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	135, 157
MboI	GATC	2 cut(s)	133, 155
MlsI	TGGCCA	1 cut(s)	251
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	105, 294
MnlI	CCTC	2 cut(s)	35, 64
Mox20I	TGGCCA	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	307
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	39, 161
MspR9I	CCNGG	3 cut(s)	58, 117, 258
MvaI	CCWGG	3 cut(s)	58, 117, 258
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	2 cut(s)	133, 155
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	3 cut(s)	37, 103, 262
PdmI	GAANNNNTTC	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	52, 233
PleI	GAGTC	1 cut(s)	211
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	3 cut(s)	56, 115, 256
PspCI	CACGTG	1 cut(s)	247
PspGI	CCWGG	3 cut(s)	56, 115, 256
PspN4I	GGNNCC	3 cut(s)	37, 103, 262
RsaI	GTAC	2 cut(s)	262, 301
RsaNI	GTAC	2 cut(s)	261, 300
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	2 cut(s)	51, 232
Sau3AI	GATC	2 cut(s)	133, 155
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	58, 117, 258
SetI	ASST	7 cut(s)	72, 150, 171, 177, 249, 266, 305
SfaNI	GCATC	1 cut(s)	218
SsiI	CCGC	2 cut(s)	5, 234
StyD4I	CCNGG	3 cut(s)	56, 115, 256
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	22, 106
TaiI	ACGT	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TseI	GCWGC	2 cut(s)	50, 231
TspDTI	ATGAA	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.