Rmu_ssc0000117.1_g000016

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000117.1
OG0001551
Physical Location & Seq
Reverse (-)
65912 .. 70201
4290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000117.1_g000016.1.cds

Sequence Viewer

Length: 927 bp
atgcagagagaatttatcgaacctgctgtaaggggcacacggaatgtactagatgcatgtatcaaggcaaaagtaaagagggtcgtggtggtttcatctgctggtgctgttatatacaacccaaaatggcccaaggataaacccatggatgaagaatgttggtctgacccagagtattgcaagaaagctaagacccagtttggcaactattgtcttgccaagacaatggcagaaactgaagctttggagtatgcaaagaaaagtgaattgagaatcattactgtttgtccatcctttgtttttggtccaatgctgcaatcaacattaaatgccagtaactcattgctcataactcttctaaaagatggactggaatctgttgagaaccgtgctcgtcctgttgttgatgtgcgtgatgtagctgaagctctacttctggcatatgaagagccagaagcagaaggcagatacatttgtacgtcttacgtgatcaaggtgcagcctttggtggagatgttgaagggcctgtatccaaattataactaccctaaaagactcattggagcagttgaagacgtgaagatgagttcagagaaattgcagaaacttggttggaagtataggccattagaggagactattgttgatgctgtcaacaactatatgaagcaagtgaccctacggaaacccgccgacccgatccgactggttctctcacctccggccacctacggtgacgggacaagcccagaccgactcagactagcctcctgcgtcgccctgtggtggtggtttgcatggtggttcaccgaaaagaggagatccgagcgccaacagttgaagcgatcaggacccgaccagaaatccacttttctggcgacttctcggccgatccttctcagttttggaatctcctccttttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

308

Amino Acids

35.05

Weight (kDa)

9.09

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 1 cut(s) 690
AclWI GGATC 3 cut(s) 694, 816, 886
AcoI YGGCCR 2 cut(s) 723, 887
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 2 cut(s) 258, 444
AfaI GTAC 2 cut(s) 48, 478
AfiI CCNNNNNNNGG 2 cut(s) 786, 816
AgsI TTSAA 3 cut(s) 520, 572, 841
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 4 cut(s) 188, 242, 422, 428
AluI AGCT 4 cut(s) 188, 242, 422, 428
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 3 cut(s) 694, 816, 886
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 5 cut(s) 128, 523, 623, 723, 887
ApeKI GCWGC 2 cut(s) 313, 499
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 4 cut(s) 129, 305, 523, 851
AsuHPI GGTGA 3 cut(s) 708, 746, 799
AvaII GGWCC 2 cut(s) 305, 851
BaeGI GKGCMC 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 460, 493
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 2 cut(s) 300, 511
BccI CCATC 2 cut(s) 298, 359
BciVI GTATCC 1 cut(s) 540
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 629
BfaI CTAG 2 cut(s) 50, 764
BfoI RGCGCY 1 cut(s) 832
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 2 cut(s) 314, 500
BlsI GCNGC 2 cut(s) 315, 501
Bme18I GGWCC 2 cut(s) 305, 851
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 4 cut(s) 129, 305, 523, 851
BmiI GGNNCC 1 cut(s) 853
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 43, 637
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 132, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 786, 816
Bse1I ACTGG 4 cut(s) 196, 333, 375, 711
Bse3DI GCAATG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 132, 144
BseGI GGATG 2 cut(s) 154, 290
BseLI CCNNNNNNNGG 2 cut(s) 786, 816
BseMI GCAATG 1 cut(s) 341
BseMII CTCAG 2 cut(s) 772, 913
BseNI ACTGG 4 cut(s) 196, 333, 375, 711
BseRI GAGGAG 3 cut(s) 647, 832, 904
BseSI GKGCMC 1 cut(s) 38
BseX3I CGGCCG 1 cut(s) 887
BseXI GCAGC 2 cut(s) 300, 511
BsgI GTGCAG 1 cut(s) 518
Bsh1285I CGRYCG 1 cut(s) 890
BshFI GGCC 5 cut(s) 130, 525, 625, 725, 889
BsiEI CGRYCG 1 cut(s) 890
BsiHKAI GWGCWC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 722
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 2 cut(s) 786, 816
BsmAI GTCTC 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 754
BsnI GGCC 5 cut(s) 130, 525, 625, 725, 889
Bsp1286I GDGCHC 2 cut(s) 38, 394
Bsp143I GATC 5 cut(s) 489, 699, 821, 845, 891
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 1 cut(s) 690
BspANI GGCC 5 cut(s) 130, 525, 625, 725, 889
BspCNI CTCAG 2 cut(s) 771, 912
BspLI GGNNCC 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 3 cut(s) 694, 816, 886
BspQI GCTCTTC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 4 cut(s) 196, 333, 375, 711
BssECI CCNNGG 2 cut(s) 132, 144
BssMI GATC 5 cut(s) 489, 699, 821, 845, 891
BssT1I CCWWGG 2 cut(s) 132, 144
Bst4CI ACNGT 4 cut(s) 283, 389, 734, 837
Bst6I CTCTTC 2 cut(s) 360, 441
BstBAI YACGTR 1 cut(s) 487
BstDEI CTNAG 3 cut(s) 189, 758, 899
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 154, 290
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 5 cut(s) 492, 702, 824, 848, 894
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 5 cut(s) 489, 699, 821, 845, 891
BstMCI CGRYCG 1 cut(s) 890
BstNSI RCATGY 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 300, 511
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 821
BstXI CCANNNNNNTGG 2 cut(s) 226, 874
BstYI RGATCY 1 cut(s) 821
BstZI CGGCCG 1 cut(s) 887
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 5 cut(s) 130, 525, 625, 725, 889
BtgI CCRYGG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 154, 290
BveI ACCTGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 4 cut(s) 129, 305, 523, 851
CseI GACGC 1 cut(s) 763
Csp6I GTAC 2 cut(s) 47, 477
CviAII CATG 3 cut(s) 57, 145, 798
CviQI GTAC 2 cut(s) 47, 477
DdeI CTNAG 3 cut(s) 189, 758, 899
DpnI GATC 5 cut(s) 491, 701, 823, 847, 893
DpnII GATC 5 cut(s) 489, 699, 821, 845, 891
EaeI YGGCCR 2 cut(s) 723, 887
EagI CGGCCG 1 cut(s) 887
Eam1104I CTCTTC 2 cut(s) 360, 441
EarI CTCTTC 2 cut(s) 360, 441
EclXI CGGCCG 1 cut(s) 887
Eco130I CCWWGG 2 cut(s) 132, 144
Eco47I GGWCC 2 cut(s) 305, 851
Eco52I CGGCCG 1 cut(s) 887
Eco57I CTGAAG 2 cut(s) 258, 444
EcoO109I RGGNCCY 2 cut(s) 523, 851
EcoT14I CCWWGG 2 cut(s) 132, 144
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 132, 144
FaeI CATG 3 cut(s) 60, 148, 801
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 754
FatI CATG 3 cut(s) 56, 144, 797
FauI CCCGC 1 cut(s) 697
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 2 cut(s) 314, 500
FokI GGATG 2 cut(s) 161, 277
Fsp4HI GCNGC 2 cut(s) 314, 500
FspBI CTAG 2 cut(s) 50, 764
GlaI GCGC 1 cut(s) 830
GluI GCNGC 2 cut(s) 314, 500
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 5 cut(s) 130, 525, 625, 725, 889
HapII CCGG 1 cut(s) 722
HgaI GACGC 1 cut(s) 763
HhaI GCGC 1 cut(s) 831
Hin1II CATG 3 cut(s) 60, 148, 801
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 5 cut(s) 273, 374, 555, 756, 909
HpaII CCGG 1 cut(s) 722
HphI GGTGA 3 cut(s) 708, 746, 799
Hpy166II GTNNAC 2 cut(s) 655, 807
Hpy188I TCNGA 5 cut(s) 166, 592, 704, 761, 826
Hpy188III TCNNGA 2 cut(s) 849, 924
Hpy8I GTNNAC 2 cut(s) 655, 807
Hpy99I CGWCG 1 cut(s) 779
HpyAV CCTTC 3 cut(s) 455, 514, 905
HpyCH4III ACNGT 4 cut(s) 283, 389, 734, 837
HpyCH4IV ACGT 3 cut(s) 479, 486, 576
HpyCH4V TGCA 8 cut(s) 4, 56, 180, 254, 316, 499, 601, 797
HpyF3I CTNAG 3 cut(s) 189, 758, 899
HpySE526I ACGT 3 cut(s) 479, 486, 576
Hsp92II CATG 3 cut(s) 60, 148, 801
HspAI GCGC 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 5 cut(s) 489, 699, 821, 845, 891
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 2 cut(s) 300, 511
LweI GCATC 2 cut(s) 43, 637
MaeI CTAG 2 cut(s) 50, 764
MaeII ACGT 3 cut(s) 479, 486, 576
MaeIII GTNAC 3 cut(s) 335, 673, 734
MalI GATC 5 cut(s) 491, 701, 823, 847, 893
MboI GATC 5 cut(s) 489, 699, 821, 845, 891
MboII GAAGA 5 cut(s) 164, 347, 458, 584, 592
MflI RGATCY 1 cut(s) 821
MhlI GDGCHC 2 cut(s) 38, 394
MluCI AATT 4 cut(s) 11, 266, 535, 596
MlyI GAGTC 2 cut(s) 549, 750
MmeI TCCRAC 2 cut(s) 593, 727
MnlI CCTC 6 cut(s) 72, 625, 729, 778, 810, 925
Mph1103I ATGCAT 1 cut(s) 58
MseI TTAA 1 cut(s) 326
MspI CCGG 1 cut(s) 722
NcoI CCATGG 1 cut(s) 144
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 489, 699, 821, 845, 891
NlaIII CATG 3 cut(s) 60, 148, 801
NlaIV GGNNCC 1 cut(s) 853
NmeAIII GCCGAG 1 cut(s) 865
NmuCI GTSAC 2 cut(s) 673, 734
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 441
PfeI GAWTC 3 cut(s) 273, 374, 909
PkrI GCNGC 2 cut(s) 315, 501
PleI GAGTC 2 cut(s) 549, 750
PpsI GAGTC 2 cut(s) 549, 750
Ppu21I YACGTR 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 851
PsiI TTATAA 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 851
PspN4I GGNNCC 1 cut(s) 853
PspPI GGNCC 4 cut(s) 129, 305, 523, 851
PspPPI RGGWCCY 1 cut(s) 851
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 821
RsaI GTAC 2 cut(s) 48, 478
RsaNI GTAC 2 cut(s) 47, 477
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 2 cut(s) 314, 500
Sau3AI GATC 5 cut(s) 489, 699, 821, 845, 891
Sau96I GGNCC 4 cut(s) 129, 305, 523, 851
SchI GAGTC 2 cut(s) 549, 750
SduI GDGCHC 2 cut(s) 38, 394
SfaNI GCATC 2 cut(s) 43, 637
SinI GGWCC 2 cut(s) 305, 851
Sse9I AATT 4 cut(s) 11, 266, 535, 596
SsiI CCGC 1 cut(s) 690
SspMI CTAG 2 cut(s) 50, 764
StyI CCWWGG 2 cut(s) 132, 144
TaaI ACNGT 4 cut(s) 283, 389, 734, 837
TaiI ACGT 3 cut(s) 482, 489, 579
TaqI TCGA 1 cut(s) 18
TaqII GACCGA 1 cut(s) 768
TasI AATT 4 cut(s) 11, 266, 535, 596
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 3 cut(s) 273, 374, 909
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 2 cut(s) 673, 734
TseI GCWGC 2 cut(s) 313, 499
Tsp45I GTSAC 2 cut(s) 673, 734
TspDTI ATGAA 4 cut(s) 84, 165, 459, 680
TspGWI ACGGA 2 cut(s) 55, 697
VpaK11BI GGWCC 2 cut(s) 305, 851
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 60
XspI CTAG 2 cut(s) 50, 764
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.