FvH4_5g26030

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001551
Physical Location & Seq
Forward (+)
17526187 .. 17528609
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26030.t2

Sequence Viewer

Length: 981 bp
ATGGAGGGTGAGAATGAAAAAGTGTGCGTAACAGGAGCTGGAGGATTTGCTGCCTCCTGGGTCGTCAAGCTTCTTCTCTCTCGGGGCTATATTGTCCATGGAACCGTCAGACAACCAGGTGATAGCAAGTATGAGCACTTGAACAAGCTTGAGAAAGCATCAGAGAATCTGAAACTGTTCAAGGCAGATTTGCTGGACTATGATTCACTATGCTCCGCGATTTCGGGATGCAGCGGTGTGTTCCATGTGGCCAGTCCTGTACCTACAACCGAGGTAAAAGACCCCGAAGCAGAAGTACTTGAACCAGCTGTGAGGGGAACACTTAATGTGCTGAAAGCTTGCTTAGAGGCCAAGGTGAAGAGAGTTGTGCTTGTGTCCTCTACAGCTGCTGTTGTGATGAACCCGAACTGGCCCAAGGATCAAGTCAAGGACGAGAGCTGTTGGTCTGATACTGAATATATAAAAACCACTAGTATGAAAACTTCTAAGAAATGGTATTATGTTTCGAAAACACAAGCAGAGAGGGAGGCTCTGGAGTTTGGAAGAACAACTGGACTTGAGGTTGTTACTGTTTGTTCTTCTGCCATTTTGGGGCCAGTTTTGCAATCCACCCTAATTTCCAGTAGCTGGCTCGTGCCCATGGGTCTCAAAGGTGGGTTTGGTTCGTTGGGATACAATTATTGGACTGTGGTGGATGTTCGTGATTTAGCTGAAGCACTGCTTCTTGCATATAAGAAAGCTGACGCTGGAGAAAGATACATATGCACATCACATGCAATGGGGGTGGAGGAAGTTGTGGAGAAATACATTAAGATTTCATATCCCACCTACAACTATTCCGACAAGCTTAGTCACACAGAGGAAGAAGAAGAGAAAGTGAGTTCGGAAAAACTGCAGAAGTTGGGTTGGAGTTACAGACCATTTGAGGAAACTATTGCCGATGCAATTGAAAACTGCCGGAAGATCGGTGTCTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

327

Amino Acids

36.04

Weight (kDa)

5.48

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDP_Man_Dehyd PF16363 4 - 280 3.6e-07 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 16 - 174 5.2e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 17 - 104 5.9e-09 NAD(P)H-binding
Epimerase PF01370 20 - 224 6.7e-15 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 20 - 103 6.9e-07 Polysaccharide biosynthesis protein
NAD_binding_4 PF07993 48 - 174 5e-08 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 627
AccII CGCG 1 cut(s) 218
AciI CCGC 2 cut(s) 216, 234
AclWI GGATC 1 cut(s) 426
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 2 cut(s) 261, 297
AfiI CCNNNNNNNGG 2 cut(s) 591, 627
AgsI TTSAA 4 cut(s) 142, 181, 302, 950
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 2 cut(s) 56, 115
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 650
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 3 cut(s) 38, 389, 627
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 4 cut(s) 249, 348, 410, 593
ApeKI GCWGC 3 cut(s) 50, 231, 386
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 411, 593
AsuHPI GGTGA 3 cut(s) 20, 131, 367
AsuII TTCGAA 1 cut(s) 506
AvaI CYCGRG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 639
BalI TGGCCA 1 cut(s) 251
BarI GAAGNNNNNNTAC 4 cut(s) 279, 311, 466, 498
BauI CACGAG 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 37, 243, 373
BciT130I CCWGG 2 cut(s) 58, 117
BciVI GTATCC 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 650
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 2 cut(s) 381, 893
BfuI GTATCC 1 cut(s) 665
BisI GCNGC 3 cut(s) 51, 232, 387
BlsI GCNGC 3 cut(s) 52, 233, 388
BmcAI AGTACT 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 58, 117
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 411, 593
BmiI GGNNCC 2 cut(s) 103, 594
BmrFI CCNGG 2 cut(s) 58, 117
BmsI GCATC 3 cut(s) 167, 218, 931
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 3 cut(s) 60, 554, 768
Bpu14I TTCGAA 1 cut(s) 506
BpuEI CTTGAG 2 cut(s) 170, 578
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 6 cut(s) 57, 97, 270, 351, 414, 639
Bsc4I CCNNNNNNNGG 2 cut(s) 591, 627
Bse1I ACTGG 5 cut(s) 252, 413, 556, 596, 621
Bse3DI GCAATG 1 cut(s) 783
BseBI CCWGG 2 cut(s) 58, 117
BseDI CCNNGG 6 cut(s) 57, 97, 270, 351, 414, 639
BseGI GGATG 2 cut(s) 233, 700
BseLI CCNNNNNNNGG 2 cut(s) 591, 627
BseMI GCAATG 1 cut(s) 783
BseNI ACTGG 5 cut(s) 252, 413, 556, 596, 621
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 3 cut(s) 37, 243, 373
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 4 cut(s) 251, 350, 412, 595
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 958
BslI CCNNNNNNNGG 2 cut(s) 591, 627
BsmAI GTCTC 1 cut(s) 650
BsnI GGCC 4 cut(s) 251, 350, 412, 595
Bso31I GGTCTC 1 cut(s) 650
BsoBI CYCGRG 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 138, 639
Bsp143I GATC 2 cut(s) 418, 963
Bsp19I CCATGG 2 cut(s) 97, 639
BspACI CCGC 2 cut(s) 216, 234
BspANI GGCC 4 cut(s) 251, 350, 412, 595
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 103, 594
BspMAI CTGCAG 1 cut(s) 897
BspPI GGATC 1 cut(s) 426
BspT104I TTCGAA 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 5 cut(s) 252, 413, 556, 596, 621
BssECI CCNNGG 6 cut(s) 57, 97, 270, 351, 414, 639
BssMI GATC 2 cut(s) 418, 963
BssSI CACGAG 1 cut(s) 632
BssT1I CCWWGG 4 cut(s) 97, 351, 414, 639
Bst2BI CACGAG 1 cut(s) 632
Bst2UI CCWGG 2 cut(s) 58, 117
Bst4CI ACNGT 4 cut(s) 106, 177, 571, 688
Bst6I CTCTTC 2 cut(s) 353, 864
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 340, 629
BstDEI CTNAG 3 cut(s) 343, 486, 848
BstDSI CCRYGG 2 cut(s) 97, 639
BstF5I GGATG 2 cut(s) 233, 700
BstFNI CGCG 1 cut(s) 218
BstKTI GATC 2 cut(s) 421, 966
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 2 cut(s) 418, 963
BstMWI GCNNNNNNNGC 1 cut(s) 601
BstNI CCWGG 2 cut(s) 58, 117
BstNSI RCATGY 1 cut(s) 776
BstSCI CCNGG 2 cut(s) 56, 115
BstSFI CTRYAG 2 cut(s) 381, 893
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 3 cut(s) 37, 243, 373
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 4 cut(s) 251, 350, 412, 595
BtgI CCRYGG 2 cut(s) 97, 639
BtsCI GGATG 2 cut(s) 233, 700
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 2 cut(s) 340, 629
CaiI CAGNNNCTG 3 cut(s) 38, 389, 627
Cfr13I GGNCC 2 cut(s) 411, 593
CseI GACGC 1 cut(s) 752
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 260, 296
CspCI CAANNNNNGTGG 2 cut(s) 765, 800
CviAII CATG 4 cut(s) 98, 245, 640, 773
CviQI GTAC 2 cut(s) 260, 296
DdeI CTNAG 3 cut(s) 343, 486, 848
DpnI GATC 2 cut(s) 420, 965
DpnII GATC 2 cut(s) 418, 963
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 2 cut(s) 353, 864
EarI CTCTTC 2 cut(s) 353, 864
Eco130I CCWWGG 4 cut(s) 97, 351, 414, 639
Eco31I GGTCTC 1 cut(s) 650
Eco57I CTGAAG 1 cut(s) 732
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 56, 115
EcoT14I CCWWGG 4 cut(s) 97, 351, 414, 639
ErhI CCWWGG 4 cut(s) 97, 351, 414, 639
FaeI CATG 4 cut(s) 101, 248, 643, 776
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FatI CATG 4 cut(s) 97, 244, 639, 772
FauNDI CATATG 1 cut(s) 761
Fnu4HI GCNGC 3 cut(s) 51, 232, 387
FokI GGATG 2 cut(s) 240, 707
Fsp4HI GCNGC 3 cut(s) 51, 232, 387
FspBI CTAG 1 cut(s) 471
GluI GCNGC 3 cut(s) 51, 232, 387
GsuI CTGGAG 3 cut(s) 60, 554, 768
HaeIII GGCC 4 cut(s) 251, 350, 412, 595
HapII CCGG 1 cut(s) 958
HgaI GACGC 1 cut(s) 752
Hin1II CATG 4 cut(s) 101, 248, 643, 776
HindIII AAGCTT 4 cut(s) 68, 146, 336, 845
HinfI GANTC 2 cut(s) 166, 203
HpaII CCGG 1 cut(s) 958
HphI GGTGA 3 cut(s) 20, 131, 367
Hpy188I TCNGA 6 cut(s) 110, 163, 171, 448, 841, 886
Hpy188III TCNNGA 3 cut(s) 225, 533, 701
HpyCH4III ACNGT 4 cut(s) 106, 177, 571, 688
HpyCH4V TGCA 7 cut(s) 231, 604, 728, 765, 776, 895, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 601
HpyF3I CTNAG 3 cut(s) 343, 486, 848
Hsp92II CATG 4 cut(s) 101, 248, 643, 776
Kzo9I GATC 2 cut(s) 418, 963
LmnI GCTCC 2 cut(s) 35, 218
Lsp1109I GCAGC 3 cut(s) 37, 243, 373
LweI GCATC 3 cut(s) 167, 218, 931
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 4 cut(s) 28, 565, 851, 911
MalI GATC 2 cut(s) 420, 965
MboI GATC 2 cut(s) 418, 963
MboII GAAGA 8 cut(s) 65, 370, 555, 570, 875, 878, 881, 973
MfeI CAATTG 1 cut(s) 945
MhlI GDGCHC 2 cut(s) 138, 639
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 3 cut(s) 615, 676, 945
MluNI TGGCCA 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 864, 887
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 251
MseI TTAA 2 cut(s) 324, 810
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 3 cut(s) 234, 308, 386
MspI CCGG 1 cut(s) 958
MspR9I CCNGG 2 cut(s) 58, 117
MunI CAATTG 1 cut(s) 945
MvaI CCWGG 2 cut(s) 58, 117
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 601
NcoI CCATGG 2 cut(s) 97, 639
NdeI CATATG 1 cut(s) 761
NdeII GATC 2 cut(s) 418, 963
NlaIII CATG 4 cut(s) 101, 248, 643, 776
NlaIV GGNNCC 2 cut(s) 103, 594
NmuCI GTSAC 1 cut(s) 851
NspI RCATGY 1 cut(s) 776
NspV TTCGAA 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 166, 203
PflMI CCANNNNNTGG 1 cut(s) 627
PkrI GCNGC 3 cut(s) 52, 233, 388
Psp6I CCWGG 2 cut(s) 56, 115
PspGI CCWGG 2 cut(s) 56, 115
PspN4I GGNNCC 2 cut(s) 103, 594
PspPI GGNCC 2 cut(s) 411, 593
PstI CTGCAG 1 cut(s) 897
PstNI CAGNNNCTG 3 cut(s) 38, 389, 627
PvuII CAGCTG 2 cut(s) 308, 386
RsaI GTAC 2 cut(s) 261, 297
RsaNI GTAC 2 cut(s) 260, 296
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 2 cut(s) 324, 810
SatI GCNGC 3 cut(s) 51, 232, 387
Sau3AI GATC 2 cut(s) 418, 963
Sau96I GGNCC 2 cut(s) 411, 593
ScaI AGTACT 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 58, 117
SduI GDGCHC 2 cut(s) 138, 639
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 3 cut(s) 167, 218, 931
SfcI CTRYAG 2 cut(s) 381, 893
SfuI TTCGAA 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 149, 557
SmoI CTYRAG 2 cut(s) 149, 557
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 3 cut(s) 615, 676, 945
SsiI CCGC 2 cut(s) 216, 234
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 56, 115
StyI CCWWGG 4 cut(s) 97, 351, 414, 639
TaaI ACNGT 4 cut(s) 106, 177, 571, 688
TaqI TCGA 1 cut(s) 506
TasI AATT 3 cut(s) 615, 676, 945
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 2 cut(s) 166, 203
Tru1I TTAA 2 cut(s) 324, 810
Tru9I TTAA 2 cut(s) 324, 810
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 1 cut(s) 851
TseI GCWGC 3 cut(s) 50, 231, 386
Tsp45I GTSAC 1 cut(s) 851
TspDTI ATGAA 4 cut(s) 30, 413, 491, 807
TspRI CASTG 1 cut(s) 723
Van91I CCANNNNNTGG 1 cut(s) 627
XceI RCATGY 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 471
ZrmI AGTACT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.