Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Forward (+)

463988 .. 467030

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1003900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATGGCGGCACCGGCGAAGGAGGAGAAGGAAAGAGTATGTGTAACTGGGGCTGGAGGATTTGTGGGCTCTTGGATTGTCAAGCTTCTTCTCTCTAGCGATTATCTTGTCCACGGAACCGTCCGAAACCCCCAGTATGCTCACTTGAGCAAGCTTGAGAAAGCATCAGAGAATCTGAAACTGTTCAAGGCAGATTTGCTGGACTACAATTCACTATGTTCGGCAGTTGCAGGATGCAGCGGAATTTTCCATGTTGCCAGCCCTGTAATTCCTAGTGCTAGTGTAGAGTTGATTGAACCAGCTGTAAAGGGAACGCTGAATGTCCTGAGTGCTTGCCTAGAAGCCAAAGTGAAACGAGTTGTTGTTGTGTCCTCTATATCCGCTGTTTTTGTGAGCCCGGACTGGCCTAAGGGTCAAGTCAAGGACGAGACTTGTTGGTCTGCTCCCGAATATATGAAAGCAACCAAGGCGGGTTTGAGTCAATTGGATACAATTATTGGACGGTGGTGGATGTTCGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

175

Amino Acids

18.82

Weight (kDa)

8.25

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	10 - 129	7.6e-11	NmrA-like family
Epimerase	PF01370	13 - 130	7.6e-17	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	13 - 129	5.9e-09	Polysaccharide biosynthesis protein
3Beta_HSD	PF01073	15 - 131	2e-17	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	15 - 130	2e-14	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	17 - 130	8.3e-15	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	4 cut(s)	8, 240, 381, 470
AcsI	RAATTY	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	187, 296
AluBI	AGCT	3 cut(s)	85, 154, 302
AluI	AGCT	3 cut(s)	85, 154, 302
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	2 cut(s)	71, 398
BbvI	GCAGC	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	4 cut(s)	96, 273, 279, 338
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	9, 238
BlsI	GCNGC	2 cut(s)	10, 239
Bme1390I	CCNGG	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	12, 118
BmrFI	CCNGG	1 cut(s)	398
BmrI	ACTGGG	2 cut(s)	57, 127
BmsI	GCATC	2 cut(s)	173, 224
BmuI	ACTGGG	2 cut(s)	57, 127
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	166, 176
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	112, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	3 cut(s)	52, 133, 407
Bse21I	CCTNAGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	112, 465
BseGI	GGATG	2 cut(s)	239, 516
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	3 cut(s)	52, 133, 407
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	249
BshFI	GGCC	1 cut(s)	406
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	14, 398
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	71, 398
BspACI	CCGC	4 cut(s)	8, 240, 381, 470
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	12, 118
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	52, 133, 407
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	112, 465
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	121, 183, 504
BstC8I	GCNNGC	3 cut(s)	152, 259, 334
BstDEI	CTNAG	2 cut(s)	326, 408
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	239, 516
BstMAI	GTCTC	1 cut(s)	422
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 467
BstSCI	CCNGG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	239, 516
Cac8I	GCNNGC	3 cut(s)	152, 259, 334
Cfr10I	RCCGGY	1 cut(s)	13
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	9 cut(s)	53, 69, 85, 154, 261, 302, 344, 396, 406
CviKI_1	RGCY	9 cut(s)	53, 69, 85, 154, 261, 302, 344, 396, 406
DdeI	CTNAG	2 cut(s)	326, 408
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	2 cut(s)	71, 398
Eco81I	CCTNAGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	2 cut(s)	71, 398
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	254
FaiI	YATR	7 cut(s)	40, 138, 217, 252, 377, 453, 455
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	2 cut(s)	9, 238
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	2 cut(s)	71, 398
Fsp4HI	GCNGC	2 cut(s)	9, 238
FspBI	CTAG	4 cut(s)	96, 273, 279, 338
GluI	GCNGC	2 cut(s)	9, 238
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	2 cut(s)	14, 398
Hin1II	CATG	1 cut(s)	254
HindIII	AAGCTT	2 cut(s)	83, 152
HinfI	GANTC	2 cut(s)	172, 478
HpaII	CCGG	2 cut(s)	14, 398
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	125, 169, 177
Hpy188III	TCNNGA	3 cut(s)	325, 446, 517
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	13, 22
HpyCH4III	ACNGT	3 cut(s)	121, 183, 504
HpyCH4V	TGCA	2 cut(s)	230, 237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 467
HpyF3I	CTNAG	2 cut(s)	326, 408
Hsp92II	CATG	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	2 cut(s)	173, 224
MaeI	CTAG	4 cut(s)	96, 273, 279, 338
MaeIII	GTNAC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	80
MfeI	CAATTG	1 cut(s)	482
MhlI	GDGCHC	2 cut(s)	71, 398
MluCI	AATT	5 cut(s)	208, 243, 267, 482, 492
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	3 cut(s)	16, 50, 382
MroXI	GAANNNNTTC	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	240, 302, 383
MspI	CCGG	2 cut(s)	14, 398
MspR9I	CCNGG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	14, 467
NciI	CCSGG	1 cut(s)	398
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	12, 118
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	10, 239
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	12, 118
PvuII	CAGCTG	1 cut(s)	302
SatI	GCNGC	2 cut(s)	9, 238
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	2 cut(s)	71, 398
SetI	ASST	3 cut(s)	87, 156, 304
SfaNI	GCATC	2 cut(s)	173, 224
SgrAI	CRCCGGYG	1 cut(s)	13
SmlI	CTYRAG	2 cut(s)	145, 155
SmoI	CTYRAG	2 cut(s)	145, 155
Sse9I	AATT	5 cut(s)	208, 243, 267, 482, 492
SsiI	CCGC	4 cut(s)	8, 240, 381, 470
SspMI	CTAG	4 cut(s)	96, 273, 279, 338
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	121, 183, 504
TasI	AATT	5 cut(s)	208, 243, 267, 482, 492
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	129
XapI	RAATTY	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	4 cut(s)	96, 273, 279, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.