Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Forward (+)

357341 .. 357796

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGGGTGGGACGACTGATCAGAAAGAAAAAGTATGCGTGACTGGAGCTGGAGGATTTACTGGCTCTTGGCTCGTCAACCTCCTTCTGTCCAAGGACTATGTTGTTCATGGAACCGTCAGGCAACCAGGAGACAGCAAGTATGATCACTTGAACAAGCTTGAGAAAGCATCAGAGAACCTCAAACTGTTCAAGGCAGATTTGTTGGACTACGACTCTCTTCGTTTGGCCATTGAAGGTTGCAGCGGTGTCTTCCATGTTGCCAGCCCTATACCCACTTATCTTAAAGACTCAGACCCTGAGGCAAGAATCTTCCAGATTATGTTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

111

Amino Acids

12.05

Weight (kDa)

5.85

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	8 - 89	8.3e-08	NmrA-like family
Epimerase	PF01370	12 - 98	5.2e-11	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	14 - 89	1.9e-12	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	14 - 93	2.6e-07	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	16 - 93	1.8e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 246
AcoI	YGGCCR	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	154, 193, 236
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	50, 160
AluI	AGCT	2 cut(s)	50, 160
Alw26I	GTCTC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	2 cut(s)	19, 145
BcoDI	GTCTC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	66, 72
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	49, 67
Bse21I	CCTNAGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	291, 306
BseNI	ACTGG	2 cut(s)	49, 67
BseXI	GCAGC	1 cut(s)	255
BshFI	GGCC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	19, 145
BspACI	CCGC	2 cut(s)	5, 246
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	292, 305
BspLI	GGNNCC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	49, 67
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	19, 145
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	118, 189
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	292, 300
BstKTI	GATC	2 cut(s)	22, 148
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	19, 145
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	299
CviAII	CATG	2 cut(s)	110, 257
CviJI	RGCY	6 cut(s)	50, 66, 73, 160, 230, 267
CviKI_1	RGCY	6 cut(s)	50, 66, 73, 160, 230, 267
DdeI	CTNAG	2 cut(s)	292, 300
DpnI	GATC	2 cut(s)	21, 147
DpnII	GATC	2 cut(s)	19, 145
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	113, 260
FaiI	YATR	8 cut(s)	37, 102, 111, 144, 258, 272, 323, 328
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	109, 256
FbaI	TGATCA	2 cut(s)	19, 145
Fnu4HI	GCNGC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	244
GsuI	CTGGAG	2 cut(s)	66, 72
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	113, 260
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	3 cut(s)	215, 290, 309
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	24, 175, 295
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	95, 230
HpyCH4III	ACNGT	2 cut(s)	118, 189
HpyCH4V	TGCA	1 cut(s)	243
HpyF3I	CTNAG	2 cut(s)	292, 300
Hsp92II	CATG	2 cut(s)	113, 260
Ksp22I	TGATCA	2 cut(s)	19, 145
Kzo9I	GATC	2 cut(s)	19, 145
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	9 cut(s)	30, 36, 48, 106, 114, 141, 277, 312, 329
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	21, 147
MboI	GATC	2 cut(s)	19, 145
MboII	GAAGA	3 cut(s)	212, 244, 304
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	209, 284
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	47, 92, 191, 295
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	2 cut(s)	285, 331
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	19, 145
NlaIII	CATG	2 cut(s)	113, 260
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	2 cut(s)	209, 284
PpsI	GAGTC	2 cut(s)	209, 284
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	285, 331
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	19, 145
SchI	GAGTC	2 cut(s)	209, 284
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	5 cut(s)	52, 84, 162, 183, 241
SfaNI	GCATC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	2 cut(s)	5, 246
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	118, 189
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	285, 331
Tru9I	TTAA	2 cut(s)	285, 331
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.