RLG00000002544

Cinnamoyl-CoA reductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
36086971 .. 36088970
2000 bp
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UTR
Exon/CDS
Intron
RLM00000002544

Sequence Viewer

Length: 621 bp
ATGGCCTCCGTCTACTGCCAAAAGTCTTTAACAAGTTCGAAACTCTCAGAACAAATCTTGTTCATGTTTGCTAACAATGGGAGAGAAAGATACTGTGATGAGAAGAATGCCCATTTGAAGAAACTGGAAAACTCTTCTGAGAATTTGCAACTGTTCAAGGCAGACTTGTTCGACTTTGAAGGTCTTTGTGCTGCCATTTCTAGGTGTTCTGGTGTTTTCCATGTTGCCTGCCCTGTTCCATTGGACGAAGTTTCTAACTCTGATGAGGCAAGATTTTCACCTCGCTATGGACTGGAATCTGTTGAGAACCATGCTCGTCCTGTTGTTGATGTGCGTGATGTAGCTGAAGCTCTACTTCTGGCATATGAAAAGCCAGAAGCAAAAGGCAGATACATTTGTACATCGTACGTGATAAAGGTTCACACTTTGGTGGAGATGTTGAAGGGCCTGTATCCAAATTATAACTACCCTAAAAGAATCATTGAAGCAGTTGAAGACGTGAAGATGAGTTCAGAGAAATTGCAGAAACTTGGTTGGAAGTTTAGGCCATTAGAGGAGACTATTGTTGATGCTGTCAACAACTATATGAAGAAAGTGGTCTCCTCTGCAAATAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

23.42

Weight (kDa)

6.45

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
AccI GTMKAC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 2 cut(s) 400, 407
AfiI CCNNNNNNNGG 2 cut(s) 201, 287
AgsI TTSAA 6 cut(s) 118, 157, 179, 442, 485, 494
AjiI CACGTC 1 cut(s) 499
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 2 cut(s) 344, 350
AluI AGCT 2 cut(s) 344, 350
Alw26I GTCTC 2 cut(s) 551, 604
AoxI GGCC 3 cut(s) 3, 445, 545
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 270
AsuII TTCGAA 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 382, 415
BbsI GAAGAC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 178
BciVI GTATCC 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 551, 604
BfaI CTAG 2 cut(s) 201, 619
BfuI GTATCC 1 cut(s) 462
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 445
BmsI GCATC 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 409
BsaI GGTCTC 1 cut(s) 604
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 287
Bse1I ACTGG 2 cut(s) 129, 297
BseLI CCNNNNNNNGG 2 cut(s) 201, 287
BseMII CTCAG 2 cut(s) 60, 129
BseNI ACTGG 2 cut(s) 129, 297
BseRI GAGGAG 2 cut(s) 569, 592
BseXI GCAGC 1 cut(s) 178
BshFI GGCC 3 cut(s) 5, 447, 547
BsiWI CGTACG 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 201, 287
BsmAI GTCTC 2 cut(s) 551, 604
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 3 cut(s) 5, 447, 547
Bso31I GGTCTC 1 cut(s) 604
Bsp119I TTCGAA 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 398
BspANI GGCC 3 cut(s) 5, 447, 547
BspCNI CTCAG 2 cut(s) 59, 130
BspT104I TTCGAA 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 398
BsrI ACTGG 2 cut(s) 129, 297
Bst4CI ACNGT 2 cut(s) 95, 153
Bst6I CTCTTC 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 409
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 46, 138
BstMAI GTCTC 2 cut(s) 551, 604
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 501
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 3 cut(s) 5, 447, 547
BtrI CACGTC 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 399, 406
CviAII CATG 3 cut(s) 64, 221, 311
CviJI RGCY 6 cut(s) 5, 344, 350, 373, 447, 547
CviKI_1 RGCY 6 cut(s) 5, 344, 350, 373, 447, 547
CviQI GTAC 2 cut(s) 399, 406
DdeI CTNAG 2 cut(s) 46, 138
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 445
FaeI CATG 3 cut(s) 67, 224, 314
FaiI YATR 9 cut(s) 65, 222, 288, 312, 364, 366, 462, 585, 587
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 339, 371
FatI CATG 3 cut(s) 63, 220, 310
FauNDI CATATG 1 cut(s) 364
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 201, 619
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 3 cut(s) 5, 447, 547
Hin1II CATG 3 cut(s) 67, 224, 314
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 2 cut(s) 296, 477
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 3 cut(s) 13, 421, 577
Hpy188I TCNGA 4 cut(s) 49, 139, 262, 514
Hpy8I GTNNAC 3 cut(s) 13, 421, 577
HpyAV CCTTC 2 cut(s) 173, 436
HpyCH4III ACNGT 2 cut(s) 95, 153
HpyCH4IV ACGT 2 cut(s) 408, 498
HpyCH4V TGCA 3 cut(s) 148, 523, 608
HpyF3I CTNAG 2 cut(s) 46, 138
HpySE526I ACGT 2 cut(s) 408, 498
Hsp92II CATG 3 cut(s) 67, 224, 314
LpnPI CCDG 9 cut(s) 110, 195, 241, 246, 278, 333, 344, 387, 461
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 559
MaeI CTAG 2 cut(s) 201, 619
MaeII ACGT 2 cut(s) 408, 498
MboII GAAGA 6 cut(s) 115, 126, 130, 506, 514, 601
MluCI AATT 3 cut(s) 142, 457, 518
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 5 cut(s) 16, 259, 291, 547, 613
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 112
NdeI CATATG 1 cut(s) 364
NlaIII CATG 3 cut(s) 67, 224, 314
NspV TTCGAA 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 428
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 296, 477
Pfl23II CGTACG 1 cut(s) 405
PkrI GCNGC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 409
PsiI TTATAA 1 cut(s) 462
PspLI CGTACG 1 cut(s) 405
PspPI GGNCC 1 cut(s) 445
RsaI GTAC 2 cut(s) 400, 407
RsaNI GTAC 2 cut(s) 399, 406
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 445
SetI ASST 8 cut(s) 184, 206, 283, 346, 352, 411, 420, 501
SfaNI GCATC 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 3 cut(s) 142, 457, 518
SspMI CTAG 2 cut(s) 201, 619
TaaI ACNGT 2 cut(s) 95, 153
TaiI ACGT 2 cut(s) 411, 501
TaqI TCGA 2 cut(s) 38, 171
TasI AATT 3 cut(s) 142, 457, 518
TatI WGTACW 1 cut(s) 398
TfiI GAWTC 2 cut(s) 296, 477
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 52, 381, 602
XapI RAATTY 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 2 cut(s) 201, 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.