Rh7DG302900

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001551
Physical Location & Seq
Reverse (-)
34841242 .. 34898464
57223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG302900.1

Sequence Viewer

Length: 990 bp
ATGGCAGTTCAGAATGGAAGGTTCTGTGTTACAGGGGCTGGAGGCTTCGTTGGCTCCTGGGTCGTTAAGCTTCTTCTTTCCAAGAACTGCATAGTCCACGGAACCGTCAGAGAACCCACGGATGACAAGAACTTTCACTTGAGAAAGCTTGACAAGGCATCTGAGAACCTGAAACTGTTCAAGGCGGACTTATTGGATTATGACTCCCTTCGCTCGGCAATTGAAGGATGTGATGGAGTATTTCATGTTGCCAGTCCCGTTCCCTGCGGCAGCGTGCCAAATCCTGAGGCAAAGTTAATTGAACCTGCTGTTAAGGGGACACTTAATGTACTTAAAACATCTCTTGAAGCAAAATTTAAGAGAGTTGTTGTTGTGTCTTCTGTAGCTGCTGTTGTGATGAACCCGAACTGGCCCAAGGATAAAGTCAAGGATGAAAGCTGTTGGTCTAATCCTGAATATATTAAAACCACTAGTCTTGAATCCCTGAAAACTTCTAAGAAATGGTATTATATTTCGAAAACACAAGCAGAGAGCGAGGCTCTGGAGTTTGGAAAAAGAACTGGACTTGAGGTTGTTACTGTTTGTCCTTCTGCCATTTTGGGTCCACTTTTGCAACCTACCCTAAATTCCAGTACCTTGCTCCTGCCTATGGGTCTCAAAGGTGGGTTCGGTTCGTTTGGATACAATTATTGGACTGTGGTGGATGTTCGTGACTTAGCTGAAGCACTGCTTATGGTTTACAAGAAATCTGACGCTGGAGAAAGATATATATGCACATCACATGCAATTGGGGTGGAGGAAGTGGTGGAGAAATACTTGAAGATTTCATATCCCAACTACAATTATTCCGACAAGCTTAGTCACACAGAGGAAGAAGAAGAGAAACTGAGTTCGGAAAAGTTGCAGAAGTTGGGTTGGAGTTACCGACCATTGGAGGAAACTCTAATTGATTCCATTGAATGCTGCCGGAAGATGGGGGTCTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

329

Amino Acids

36.52

Weight (kDa)

6.56

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 85 8.2e-07 NmrA-like family
Epimerase PF01370 9 - 255 1.8e-23 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 9 - 131 1e-07 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 10 - 127 1.5e-13 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 10 - 185 1.2e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 10 - 205 4.8e-11 Male sterility protein
NAD_binding_10 PF13460 12 - 132 5.7e-12 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AciI CCGC 2 cut(s) 185, 267
AcsI RAATTY 2 cut(s) 353, 625
AcuI CTGAAG 1 cut(s) 741
AfaI GTAC 2 cut(s) 330, 634
AfiI CCNNNNNNNGG 4 cut(s) 214, 649, 931, 973
AgsI TTSAA 7 cut(s) 181, 224, 302, 347, 479, 820, 959
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 6 cut(s) 70, 148, 386, 438, 719, 856
AluI AGCT 6 cut(s) 70, 148, 386, 438, 719, 856
Alw26I GTCTC 1 cut(s) 659
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 3 cut(s) 270, 386, 963
ApoI RAATTY 2 cut(s) 353, 625
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 411, 602
AsuII TTCGAA 1 cut(s) 515
AvaII GGWCC 1 cut(s) 602
AxyI CCTNAGG 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 3 cut(s) 282, 373, 950
BccI CCATC 2 cut(s) 227, 967
BciT130I CCWGG 1 cut(s) 58
BciVI GTATCC 1 cut(s) 674
BcoDI GTCTC 1 cut(s) 659
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 313
BfuI GTATCC 1 cut(s) 674
BisI GCNGC 4 cut(s) 268, 271, 387, 964
BlsI GCNGC 4 cut(s) 269, 272, 388, 965
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 411, 602
BmiI GGNNCC 3 cut(s) 55, 103, 603
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 523, 555
BpmI CTGGAG 3 cut(s) 60, 563, 777
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 2 cut(s) 160, 587
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 4 cut(s) 57, 97, 117, 414
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 649, 931, 973
Bse1I ACTGG 4 cut(s) 252, 413, 565, 630
Bse21I CCTNAGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 4 cut(s) 57, 97, 117, 414
BseGI GGATG 4 cut(s) 127, 233, 436, 709
BseLI CCNNNNNNNGG 4 cut(s) 214, 649, 931, 973
BseMII CTCAG 3 cut(s) 153, 276, 878
BseNI ACTGG 4 cut(s) 252, 413, 565, 630
BseXI GCAGC 3 cut(s) 282, 373, 950
BshFI GGCC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 967
BslFI GGGAC 2 cut(s) 240, 331
BslI CCNNNNNNNGG 4 cut(s) 214, 649, 931, 973
BsmAI GTCTC 1 cut(s) 659
BsmFI GGGAC 2 cut(s) 240, 331
BsmI GAATGC 1 cut(s) 965
BsnI GGCC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 659
Bsp119I TTCGAA 1 cut(s) 515
BspACI CCGC 2 cut(s) 185, 267
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 3 cut(s) 154, 277, 879
BspLI GGNNCC 3 cut(s) 55, 103, 603
BspMI ACCTGC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 659
BsrI ACTGG 4 cut(s) 252, 413, 565, 630
BssECI CCNNGG 4 cut(s) 57, 97, 117, 414
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 4 cut(s) 106, 177, 580, 697
Bst6I CTCTTC 1 cut(s) 873
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 6 cut(s) 162, 285, 495, 715, 857, 887
BstDSI CCRYGG 2 cut(s) 97, 117
BstF5I GGATG 4 cut(s) 127, 233, 436, 709
BstMAI GTCTC 1 cut(s) 659
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 282, 373, 950
BstV2I GAAGAC 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 285
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 1 cut(s) 412
BtgI CCRYGG 2 cut(s) 97, 117
BtsCI GGATG 4 cut(s) 127, 233, 436, 709
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 1 cut(s) 725
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 275
CaiI CAGNNNCTG 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 411, 602
CseI GACGC 1 cut(s) 761
Csp6I GTAC 2 cut(s) 329, 633
CspCI CAANNNNNGTGG 4 cut(s) 457, 492, 774, 809
CviAII CATG 2 cut(s) 245, 782
CviQI GTAC 2 cut(s) 329, 633
DdeI CTNAG 6 cut(s) 162, 285, 495, 715, 857, 887
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 741
Eco81I CCTNAGG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 2 cut(s) 248, 785
FalI AAGNNNNNCTT 4 cut(s) 173, 205, 714, 746
FaqI GGGAC 2 cut(s) 240, 331
FatI CATG 2 cut(s) 244, 781
Fnu4HI GCNGC 4 cut(s) 268, 271, 387, 964
FokI GGATG 4 cut(s) 134, 240, 443, 716
Fsp4HI GCNGC 4 cut(s) 268, 271, 387, 964
FspBI CTAG 1 cut(s) 471
GluI GCNGC 4 cut(s) 268, 271, 387, 964
GsuI CTGGAG 3 cut(s) 60, 563, 777
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 967
HgaI GACGC 1 cut(s) 761
Hin1II CATG 2 cut(s) 248, 785
HindIII AAGCTT 3 cut(s) 68, 146, 854
HinfI GANTC 3 cut(s) 203, 479, 950
HpaII CCGG 1 cut(s) 967
Hpy166II GTNNAC 3 cut(s) 97, 605, 739
Hpy188I TCNGA 6 cut(s) 12, 110, 163, 751, 850, 895
Hpy188III TCNNGA 6 cut(s) 284, 344, 452, 476, 542, 710
Hpy8I GTNNAC 3 cut(s) 97, 605, 739
HpyAV CCTTC 4 cut(s) 12, 218, 218, 597
HpyCH4III ACNGT 4 cut(s) 106, 177, 580, 697
HpyCH4V TGCA 5 cut(s) 90, 613, 774, 785, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 6 cut(s) 162, 285, 495, 715, 857, 887
Hsp92II CATG 2 cut(s) 248, 785
LmnI GCTCC 2 cut(s) 59, 645
Lsp1109I GCAGC 3 cut(s) 282, 373, 950
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 5 cut(s) 28, 574, 710, 860, 920
MboII GAAGA 7 cut(s) 65, 369, 832, 884, 887, 890, 982
MfeI CAATTG 2 cut(s) 219, 786
MluCI AATT 8 cut(s) 219, 297, 353, 625, 685, 786, 841, 945
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 873, 896
MnlI CCTC 7 cut(s) 35, 280, 529, 562, 790, 862, 928
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 7 cut(s) 66, 296, 312, 324, 333, 357, 462
MspI CCGG 1 cut(s) 967
MspR9I CCNGG 1 cut(s) 58
MunI CAATTG 2 cut(s) 219, 786
Mva1269I GAATGC 1 cut(s) 965
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 51
NlaIII CATG 2 cut(s) 248, 785
NlaIV GGNNCC 3 cut(s) 55, 103, 603
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 710, 860
NspI RCATGY 1 cut(s) 785
NspV TTCGAA 1 cut(s) 515
PctI GAATGC 1 cut(s) 965
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 479, 950
PkrI GCNGC 4 cut(s) 269, 272, 388, 965
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 55, 103, 603
PspPI GGNCC 2 cut(s) 411, 602
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 330, 634
RsaNI GTAC 2 cut(s) 329, 633
SaqAI TTAA 7 cut(s) 66, 296, 312, 324, 333, 357, 462
SatI GCNGC 4 cut(s) 268, 271, 387, 964
Sau96I GGNCC 2 cut(s) 411, 602
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 58
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 139, 566
SmoI CTYRAG 2 cut(s) 139, 566
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 8 cut(s) 219, 297, 353, 625, 685, 786, 841, 945
SsiI CCGC 2 cut(s) 185, 267
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 4 cut(s) 106, 177, 580, 697
TaqI TCGA 1 cut(s) 515
TasI AATT 8 cut(s) 219, 297, 353, 625, 685, 786, 841, 945
TatI WGTACW 1 cut(s) 328
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 479, 950
Tru1I TTAA 7 cut(s) 66, 296, 312, 324, 333, 357, 462
Tru9I TTAA 7 cut(s) 66, 296, 312, 324, 333, 357, 462
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 2 cut(s) 710, 860
TseI GCWGC 3 cut(s) 270, 386, 963
Tsp45I GTSAC 2 cut(s) 710, 860
TspDTI ATGAA 4 cut(s) 233, 413, 447, 816
TspGWI ACGGA 2 cut(s) 114, 134
TspRI CASTG 1 cut(s) 732
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 2 cut(s) 353, 625
XceI RCATGY 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.