Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000125.1

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Forward (+)

65780 .. 66887

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000125.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggcggatgcgtatgaaacagtatgtgtaactggagccggagggtttgctgcctcctggattgtcaagcttctactctccaacaactatgtcgtccatggaaccgtcagacaaccaggggatagcaagtatgatcacttgaacaagctggagagatcaccggagaacctgaagctgttcaaggcagatttgctggattatgagtctctgagattggcgatttcaggatgcagtggagtgttccacgtggccagtcctgtaccttttccaactgccataacagaccccgaagcagatgtacttaaaccagctgtggagggaacccttaatgtattgaaagcttgcgtagaggccaaagtgaagagagttgttgttgtgtcgtctatagctgctgttgtaaagaacccgaattggcccaagaatcaagtgaaagacgagagatgttggtctgatccggaatatgttaggtccactaagaattggtattatctttccaaaacacaagcagaagctgcagccttggagtttggaagaagcagtggacttgatgttgtaactgtttgtccttctcttatcatggggccactgttgcaatccactctgaatactagtagctgcctcctgcctatgggattcaaaggaaaatatttagtttctataattgtgcaatctgtttgtgactctgaaggcgggtttgagaaggtgggctacaattactggacggtggtggatgctcgtgatttagctgatgcactgcttcttgtatacaagaaatctgaggctggagaaagatacatatgcacagcacatgcaattggggtagaagaagtagtggagaagtacttgaagatttcacatcccaactacaactattctcccgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

294

Amino Acids

32.25

Weight (kDa)

6.01

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	765
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	2 cut(s)	5, 690
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	249
AcuI	CTGAAG	2 cut(s)	191, 705
AcvI	CACGTG	1 cut(s)	247
AfaI	GTAC	3 cut(s)	261, 300, 842
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	142, 181, 337, 637, 847
AhlI	ACTAGT	1 cut(s)	608
AjnI	CCWGG	2 cut(s)	56, 115
AluBI	AGCT	9 cut(s)	70, 148, 175, 311, 341, 389, 512, 615, 746
AluI	AGCT	9 cut(s)	70, 148, 175, 311, 341, 389, 512, 615, 746
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	878
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	4 cut(s)	249, 351, 413, 581
ApeKI	GCWGC	5 cut(s)	50, 389, 512, 515, 615
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	414, 468, 581
AsuHPI	GGTGA	1 cut(s)	150
AvaI	CYCGRG	1 cut(s)	878
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	251
BarI	GAAGNNNNNNTAC	4 cut(s)	282, 314, 692, 724
BauI	CACGAG	1 cut(s)	735
BbrPI	CACGTG	1 cut(s)	247
BbvI	GCAGC	5 cut(s)	37, 376, 499, 527, 602
BciT130I	CCWGG	2 cut(s)	58, 117
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	2 cut(s)	384, 513
BisI	GCNGC	5 cut(s)	51, 390, 513, 516, 616
BlsI	GCNGC	5 cut(s)	52, 391, 514, 517, 617
BmcAI	AGTACT	1 cut(s)	842
Bme1390I	CCNGG	2 cut(s)	58, 117
Bme18I	GGWCC	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	878
BmgT120I	GGNCC	3 cut(s)	414, 468, 581
BmiI	GGNNCC	4 cut(s)	37, 103, 322, 582
BmrFI	CCNGG	2 cut(s)	58, 117
BmsI	GCATC	3 cut(s)	218, 721, 739
BpmI	CTGGAG	3 cut(s)	54, 170, 804
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	3 cut(s)	97, 116, 519
BsaWI	WCCGGW	2 cut(s)	160, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	3 cut(s)	37, 252, 722
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	58, 117
BseDI	CCNNGG	3 cut(s)	97, 116, 519
BseGI	GGATG	4 cut(s)	13, 233, 736, 856
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	2 cut(s)	200, 768
BseNI	ACTGG	3 cut(s)	37, 252, 722
BseXI	GCAGC	5 cut(s)	37, 376, 499, 527, 602
BshFI	GGCC	4 cut(s)	251, 353, 415, 583
BsiHKCI	CYCGRG	1 cut(s)	878
BsiSI	CCGG	3 cut(s)	39, 161, 455
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	251, 353, 415, 583
BsoBI	CYCGRG	1 cut(s)	878
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	133, 155, 451
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	5, 690
BspANI	GGCC	4 cut(s)	251, 353, 415, 583
BspCNI	CTCAG	2 cut(s)	201, 769
BspEI	TCCGGA	1 cut(s)	454
BspLI	GGNNCC	4 cut(s)	37, 103, 322, 582
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	37, 252, 722
BssECI	CCNNGG	3 cut(s)	97, 116, 519
BssMI	GATC	3 cut(s)	133, 155, 451
BssNAI	GTATAC	1 cut(s)	766
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	97, 519
Bst1107I	GTATAC	1 cut(s)	766
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	58, 117
Bst4CI	ACNGT	5 cut(s)	22, 106, 559, 588, 724
Bst6I	CTCTTC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	209, 474, 777
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	4 cut(s)	13, 233, 736, 856
BstKTI	GATC	3 cut(s)	136, 158, 454
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	133, 155, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 589
BstNI	CCWGG	2 cut(s)	58, 117
BstNSI	RCATGY	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	56, 115
BstSFI	CTRYAG	2 cut(s)	384, 513
BstV1I	GCAGC	5 cut(s)	37, 376, 499, 527, 602
BstZ17I	GTATAC	1 cut(s)	766
BsuRI	GGCC	4 cut(s)	251, 353, 415, 583
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	13, 233, 736, 856
BtsI	GCAGTG	3 cut(s)	238, 544, 752
BtsIMutI	CAGTG	4 cut(s)	238, 544, 584, 752
Cac8I	GCNNGC	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr13I	GGNCC	3 cut(s)	414, 468, 581
Csp6I	GTAC	3 cut(s)	260, 299, 841
CviAII	CATG	3 cut(s)	98, 577, 809
CviQI	GTAC	3 cut(s)	260, 299, 841
DdeI	CTNAG	3 cut(s)	209, 474, 777
DpnI	GATC	3 cut(s)	135, 157, 453
DpnII	GATC	3 cut(s)	133, 155, 451
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	97, 519
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	191, 705
Eco72I	CACGTG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	878
EcoRII	CCWGG	2 cut(s)	56, 115
EcoT14I	CCWWGG	2 cut(s)	97, 519
ErhI	CCWWGG	2 cut(s)	97, 519
FaeI	CATG	3 cut(s)	101, 580, 812
FatI	CATG	3 cut(s)	97, 576, 808
FauI	CCCGC	1 cut(s)	683
FauNDI	CATATG	1 cut(s)	797
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	5 cut(s)	51, 390, 513, 516, 616
FokI	GGATG	4 cut(s)	20, 240, 743, 843
Fsp4HI	GCNGC	5 cut(s)	51, 390, 513, 516, 616
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	5 cut(s)	51, 390, 513, 516, 616
GsuI	CTGGAG	3 cut(s)	54, 170, 804
HaeIII	GGCC	4 cut(s)	251, 353, 415, 583
HapII	CCGG	3 cut(s)	39, 161, 455
Hin1II	CATG	3 cut(s)	101, 580, 812
HindIII	AAGCTT	2 cut(s)	68, 339
HinfI	GANTC	4 cut(s)	203, 421, 633, 680
HpaII	CCGG	3 cut(s)	39, 161, 455
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	3 cut(s)	471, 542, 766
Hpy188I	TCNGA	6 cut(s)	110, 210, 451, 603, 685, 778
Hpy188III	TCNNGA	4 cut(s)	225, 455, 737, 878
Hpy8I	GTNNAC	3 cut(s)	471, 542, 766
HpyAV	CCTTC	3 cut(s)	576, 680, 694
HpyCH4III	ACNGT	5 cut(s)	22, 106, 559, 588, 724
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	7 cut(s)	231, 515, 592, 667, 752, 801, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 589
HpyF3I	CTNAG	3 cut(s)	209, 474, 777
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	101, 580, 812
Kpn2I	TCCGGA	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 155, 451
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	5 cut(s)	37, 376, 499, 527, 602
LweI	GCATC	3 cut(s)	218, 721, 739
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	28, 553, 677
MalI	GATC	3 cut(s)	135, 157, 453
MboI	GATC	3 cut(s)	133, 155, 451
MboII	GAAGA	4 cut(s)	373, 543, 836, 859
MfeI	CAATTG	1 cut(s)	813
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	5 cut(s)	409, 478, 660, 712, 813
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	2 cut(s)	212, 674
MmeI	TCCRAC	2 cut(s)	105, 293
MnlI	CCTC	6 cut(s)	35, 64, 310, 343, 629, 772
Mox20I	TGGCCA	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	2 cut(s)	303, 327
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	39, 161, 455
MspR9I	CCNGG	2 cut(s)	58, 117
MunI	CAATTG	1 cut(s)	813
MvaI	CCWGG	2 cut(s)	58, 117
MwoI	GCNNNNNNNGC	2 cut(s)	512, 589
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	1 cut(s)	797
NdeII	GATC	3 cut(s)	133, 155, 451
NlaIII	CATG	3 cut(s)	101, 580, 812
NlaIV	GGNNCC	4 cut(s)	37, 103, 322, 582
NmuCI	GTSAC	1 cut(s)	677
NspI	RCATGY	1 cut(s)	812
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	421, 633
PfoI	TCCNGGA	1 cut(s)	56
PkrI	GCNGC	5 cut(s)	52, 391, 514, 517, 617
PleI	GAGTC	2 cut(s)	211, 674
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	2 cut(s)	211, 674
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	56, 115
PspCI	CACGTG	1 cut(s)	247
PspGI	CCWGG	2 cut(s)	56, 115
PspN4I	GGNNCC	4 cut(s)	37, 103, 322, 582
PspPI	GGNCC	3 cut(s)	414, 468, 581
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	3 cut(s)	261, 300, 842
RsaNI	GTAC	3 cut(s)	260, 299, 841
SaqAI	TTAA	2 cut(s)	303, 327
SatI	GCNGC	5 cut(s)	51, 390, 513, 516, 616
Sau3AI	GATC	3 cut(s)	133, 155, 451
Sau96I	GGNCC	3 cut(s)	414, 468, 581
ScaI	AGTACT	1 cut(s)	842
SchI	GAGTC	2 cut(s)	212, 674
ScrFI	CCNGG	2 cut(s)	58, 117
SfaNI	GCATC	3 cut(s)	218, 721, 739
SfcI	CTRYAG	2 cut(s)	384, 513
SinI	GGWCC	1 cut(s)	468
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	5 cut(s)	409, 478, 660, 712, 813
SsiI	CCGC	2 cut(s)	5, 690
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	2 cut(s)	56, 115
StyI	CCWWGG	2 cut(s)	97, 519
TaaI	ACNGT	5 cut(s)	22, 106, 559, 588, 724
TaiI	ACGT	1 cut(s)	249
TasI	AATT	5 cut(s)	409, 478, 660, 712, 813
TatI	WGTACW	2 cut(s)	298, 840
TfiI	GAWTC	2 cut(s)	421, 633
Tru1I	TTAA	2 cut(s)	303, 327
Tru9I	TTAA	2 cut(s)	303, 327
TscAI	CASTG	4 cut(s)	238, 544, 591, 759
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	5 cut(s)	50, 389, 512, 515, 615
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	4 cut(s)	238, 544, 591, 759
VpaK11BI	GGWCC	1 cut(s)	468
XceI	RCATGY	1 cut(s)	812
XmiI	GTMKAC	1 cut(s)	765
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.