Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Forward (+)

599099 .. 600905

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCGGGTGAGAAAGAAAAGGTATGCGTGACTGGGGCTGGAGGATTTGCCGCCTCTTGGGTCGTTAACCTTCTTCTCTCAAAGGACTATGTTGTTCATGGAACAGTCAGACAGCCAGGGGACAGCAAGTATGCTCACTTGAACAAGCTTGAGAAAGCATCAGAGAACTTGAAACTGTTCAAGGCAGATCTGTTGGACTACGACTCTCTGCGTGCGGCTGTTGAAGGATGCAGTGGAGTCTTCCATGTTGCCAGTCCTGTACCAGCTGCTCATAGTGTTGCAGATCCTGAGGAGTTTCTTGAACCAGCTGTAACGGGAACGCTTAATGTACTCAAGGCTTGCGTCGAAGCCAAAGTGAAGAGAGTTGTTGTTGTGTCCTCCATAGCCGCTGTTGTTATGAACCCTGACTGGCCTAAGGGTCAAGTCAAGGACGAAACCTGTTGGTCTGTTCCTGAATATATTAAAACGACCAAGAAATGGTACTATCTTTCAAAAACAGAAGCAGAAAGACAGGCTTTGGATTTTGGAAAAAGAAATGGAATTGAGGTTGTAACTGTTTGTCCTTCTGTCATTTTGGGGCCAATTTTGCAATCCAATTTGAATTCCAGTAGCCTTCTGCTTGTTGGGACTGTAAAAGGTGGGGTTGAGTCATTGGGATACAATTACTGGACGTTCGTGGATGCTCGTGATTTTGCTGAAGCACTGCTTCTTGCATACAACAAGTCTGAGGCCGGAGAGAGATATTTATGCACATCGCACGCTATCGGTGCAGAGGAGGTGGTGGAGAAGTATTTGAGGCCTGCATATCCTAAGTACAGCTATTCCAAGATCCTTACCCACACAGAGGAAGAAAAAGAGCACCTCAGTTCGGAAAAATTGCAGAGGTTGGGTTGGACTTTCCGGCCTGTGGAGGAAACTCTCATTGATTCCATTGAAAGCTACCGGAAGGCTGGAATTGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

322

Amino Acids

35.4

Weight (kDa)

5.89

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	477
AciI	CCGC	4 cut(s)	5, 51, 215, 387
AclWI	GGATC	2 cut(s)	278, 823
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	4 cut(s)	261, 330, 482, 815
AfiI	CCNNNNNNNGG	5 cut(s)	57, 477, 844, 868, 907
AgsI	TTSAA	8 cut(s)	142, 172, 181, 224, 302, 492, 601, 935
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	148, 266, 308, 819, 939
AluI	AGCT	5 cut(s)	148, 266, 308, 819, 939
Alw21I	GWGCWC	1 cut(s)	861
AlwI	GGATC	2 cut(s)	278, 823
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	5 cut(s)	410, 578, 729, 797, 902
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	20
AxyI	CCTNAGG	2 cut(s)	288, 414
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	650
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	4 cut(s)	51, 216, 267, 387
BlsI	GCNGC	4 cut(s)	52, 217, 268, 388
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	3 cut(s)	167, 218, 670
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	170, 317
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	942
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 477, 844, 868, 907
Bse1I	ACTGG	5 cut(s)	37, 252, 413, 606, 671
Bse21I	CCTNAGG	2 cut(s)	288, 414
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	233, 685
BseLI	CCNNNNNNNGG	5 cut(s)	57, 477, 844, 868, 907
BseMII	CTCAG	3 cut(s)	279, 717, 877
BseNI	ACTGG	5 cut(s)	37, 252, 413, 606, 671
BseRI	GAGGAG	2 cut(s)	305, 788
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	5 cut(s)	412, 580, 731, 799, 904
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	3 cut(s)	732, 901, 943
BslFI	GGGAC	2 cut(s)	134, 640
BslI	CCNNNNNNNGG	5 cut(s)	57, 477, 844, 868, 907
BsmFI	GGGAC	2 cut(s)	134, 640
BsnI	GGCC	5 cut(s)	412, 580, 731, 799, 904
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	187, 283, 828
BspACI	CCGC	4 cut(s)	5, 51, 215, 387
BspANI	GGCC	5 cut(s)	412, 580, 731, 799, 904
BspCNI	CTCAG	3 cut(s)	280, 718, 876
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	278, 823
BsrI	ACTGG	5 cut(s)	37, 252, 413, 606, 671
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	187, 283, 828
BssSI	CACGAG	1 cut(s)	684
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	4 cut(s)	106, 177, 556, 631
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	4 cut(s)	213, 340, 759, 801
BstDEI	CTNAG	5 cut(s)	288, 414, 726, 810, 863
BstF5I	GGATG	2 cut(s)	233, 685
BstKTI	GATC	3 cut(s)	190, 286, 831
BstMBI	GATC	3 cut(s)	187, 283, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	586, 767
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	3 cut(s)	187, 283, 828
BstYI	RGATCY	3 cut(s)	187, 283, 828
Bsu36I	CCTNAGG	2 cut(s)	288, 414
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	5 cut(s)	412, 580, 731, 799, 904
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	233, 685
BtsI	GCAGTG	2 cut(s)	238, 701
BtsIMutI	CAGTG	2 cut(s)	238, 701
Cac8I	GCNNGC	4 cut(s)	213, 340, 759, 801
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	578
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	4 cut(s)	260, 329, 481, 814
CviAII	CATG	2 cut(s)	98, 245
CviQI	GTAC	4 cut(s)	260, 329, 481, 814
DdeI	CTNAG	5 cut(s)	288, 414, 726, 810, 863
DpnI	GATC	3 cut(s)	189, 285, 830
DpnII	GATC	3 cut(s)	187, 283, 828
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	799
Eco57I	CTGAAG	1 cut(s)	717
Eco81I	CCTNAGG	2 cut(s)	288, 414
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	101, 248
FalI	AAGNNNNNCTT	4 cut(s)	499, 531, 690, 722
FaqI	GGGAC	2 cut(s)	134, 640
FatI	CATG	2 cut(s)	97, 244
Fnu4HI	GCNGC	4 cut(s)	51, 216, 267, 387
FokI	GGATG	2 cut(s)	240, 692
Fsp4HI	GCNGC	4 cut(s)	51, 216, 267, 387
GluI	GCNGC	4 cut(s)	51, 216, 267, 387
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	5 cut(s)	412, 580, 731, 799, 904
HapII	CCGG	3 cut(s)	732, 901, 943
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	101, 248
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	203, 237, 647, 926
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	732, 901, 943
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	110, 163, 727, 871
Hpy188III	TCNNGA	4 cut(s)	287, 299, 452, 686
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	80, 218, 573, 623, 940
HpyCH4III	ACNGT	4 cut(s)	106, 177, 556, 631
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	8 cut(s)	231, 281, 589, 713, 750, 770, 803, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	586, 767
HpyF3I	CTNAG	5 cut(s)	288, 414, 726, 810, 863
HpySE526I	ACGT	1 cut(s)	671
Hsp92II	CATG	2 cut(s)	101, 248
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	187, 283, 828
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	167, 218, 670
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	3 cut(s)	28, 310, 550
MalI	GATC	3 cut(s)	189, 285, 830
MboI	GATC	3 cut(s)	187, 283, 828
MboII	GAAGA	4 cut(s)	65, 232, 370, 860
MflI	RGATCY	3 cut(s)	187, 283, 828
MhlI	GDGCHC	1 cut(s)	861
MluCI	AATT	7 cut(s)	540, 582, 595, 601, 661, 875, 954
MlyI	GAGTC	3 cut(s)	197, 246, 656
MmeI	TCCRAC	2 cut(s)	174, 872
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	66, 324, 462
MspA1I	CMGCKG	3 cut(s)	266, 308, 389
MspI	CCGG	3 cut(s)	732, 901, 943
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	586, 767
NdeII	GATC	3 cut(s)	187, 283, 828
NlaIII	CATG	2 cut(s)	101, 248
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	926
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	4 cut(s)	52, 217, 268, 388
PleI	GAGTC	3 cut(s)	197, 245, 655
PpsI	GAGTC	3 cut(s)	197, 245, 655
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	3 cut(s)	187, 283, 828
PvuII	CAGCTG	2 cut(s)	266, 308
RsaI	GTAC	4 cut(s)	261, 330, 482, 815
RsaNI	GTAC	4 cut(s)	260, 329, 481, 814
SaqAI	TTAA	3 cut(s)	66, 324, 462
SatI	GCNGC	4 cut(s)	51, 216, 267, 387
Sau3AI	GATC	3 cut(s)	187, 283, 828
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	3 cut(s)	197, 246, 656
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	861
SfaNI	GCATC	3 cut(s)	167, 218, 670
SmlI	CTYRAG	2 cut(s)	149, 332
SmoI	CTYRAG	2 cut(s)	149, 332
Sse9I	AATT	7 cut(s)	540, 582, 595, 601, 661, 875, 954
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	4 cut(s)	5, 51, 215, 387
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	106, 177, 556, 631
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	1 cut(s)	345
TasI	AATT	7 cut(s)	540, 582, 595, 601, 661, 875, 954
TatI	WGTACW	2 cut(s)	328, 813
TauI	GCSGC	3 cut(s)	53, 218, 389
TfiI	GAWTC	1 cut(s)	926
Tru1I	TTAA	3 cut(s)	66, 324, 462
Tru9I	TTAA	3 cut(s)	66, 324, 462
TscAI	CASTG	2 cut(s)	238, 708
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	86, 413
TspRI	CASTG	2 cut(s)	238, 708
Van91I	CCANNNNNTGG	1 cut(s)	477
XapI	RAATTY	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.