RLG00000002541

Cinnamoyl-CoA reductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
36067882 .. 36068743
862 bp
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UTR
Exon/CDS
Intron
RLM00000002541

Sequence Viewer

Length: 342 bp
ATGGGTCTCAAAGGTGGGTTTGGGTCGTTTGGATACAATTATTGGACTCTGGTGGATGTTCGTGACTTAGCTGAAGCACTGCTTCTGGTTTACAAGAAATCTGACGCTGGAGAAAGATATATATGCACATCACATGCAATTGGGGTGGAGGAAGTGGTGGAGAAATACTTGAAGATTTCATATCCCAACTACAATTATTCCGACAAGCTTAGTCACACAGAGGAAGAAGAAGAGAAACTGAGTTCGGAAAAGTTGCAGAAGTTGGGTTGGAGTTACCGACCATTGGAGGAAACTCTTATTGATTCCATTGAAAGCTGCCGGACGATGGGGGTCTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.94

Weight (kDa)

4.85

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 283, 325
AgsI TTSAA 2 cut(s) 172, 311
AluBI AGCT 3 cut(s) 71, 208, 315
AluI AGCT 3 cut(s) 71, 208, 315
Alw26I GTCTC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 302
BccI CCATC 1 cut(s) 319
BciVI GTATCC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 11
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 325
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 283, 325
BseMII CTCAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 283, 325
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 67, 209, 239
BstF5I GGATG 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 302
BsuI GTATCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
CseI GACGC 1 cut(s) 113
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 71, 208, 315
CviKI_1 RGCY 3 cut(s) 71, 208, 315
DdeI CTNAG 3 cut(s) 67, 209, 239
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 93
FaeI CATG 1 cut(s) 137
FaiI YATR 5 cut(s) 120, 122, 124, 135, 181
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 129
HapII CCGG 1 cut(s) 319
HgaI GACGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 46, 302
HpaII CCGG 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 103, 202, 247
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 126, 137, 256
HpyF3I CTNAG 3 cut(s) 67, 209, 239
Hsp92II CATG 1 cut(s) 137
LpnPI CCDG 4 cut(s) 35, 71, 93, 332
Lsp1109I GCAGC 1 cut(s) 302
MaeIII GTNAC 3 cut(s) 62, 212, 272
MboII GAAGA 4 cut(s) 184, 236, 239, 242
MfeI CAATTG 1 cut(s) 138
MluCI AATT 3 cut(s) 37, 138, 193
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 2 cut(s) 225, 248
MnlI CCTC 3 cut(s) 142, 214, 280
MspI CCGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 138
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 2 cut(s) 62, 212
NspI RCATGY 1 cut(s) 137
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
SatI GCNGC 1 cut(s) 316
SchI GAGTC 1 cut(s) 40
SetI ASST 4 cut(s) 16, 73, 210, 317
SgeI CNNG 9 cut(s) 62, 74, 98, 106, 120, 146, 181, 217, 331
Sse9I AATT 3 cut(s) 37, 138, 193
TasI AATT 3 cut(s) 37, 138, 193
TfiI GAWTC 1 cut(s) 302
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 62, 212
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 2 cut(s) 62, 212
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 84
XceI RCATGY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.