Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Forward (+)

430827 .. 433341

Gene Structure 2515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1003700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGGGTGAGGCGACTGATCAGAAAGAAAAAGTATGCGTGACTGGAGCTGGAGGATTTACTGCCTCTTGGGTCGTCAACCTCCTCCTCTCCAGGGATTATGTTGTTCATGGAACTGTCAGGCAACCGGGAGACAGCAAGTATGCTTACTTGAACAAGCTTGAGAAAGCATCAGTGAACCTCAAACTGTTCAAGGCAGATTTGTTGGACTACGACTCTCTTCTTTTGGCCATTGAAGGTTGCAGCGGAGTCTTCCATGTTGCCAGCCCTGCGTTTCTCGAACCAGCAATAAAGGGAACGCTGAATGTACTCAAGGCTTGCAAAAAGGCCAAGGTGAAGAGAGTTGTAGTTGTGTCGTCTATAGCCGCCGTCGTTATGAACCCGGAGTGGCCTAAGGATCAAGTCAAGGACGAGACTTGTTGGTCCGTTCCCGAATATATGAAAACAACCAAGAAGTGGTACTATCTTTCGAAAACGGAAGCAGAGCGCGAGGCTCTGGAGTTTGGAAAAAGGAAAGGACTTGAGGTTGTGACTGTTTGTCCTTCTCTCATTTTGGGGCCAATGTTGCAACCCACTCGCAATTGCAGTAGCTTTCTCATTGCTATGACTATAATAGGTGATCTTGAGTCCTTGCCATTCAATTACTGGGCGTTCGTGGATGTTCGTGATTTAGCTGATGCACTGCTTCTTGCATACAACAAGCCTGAGGCTGCAGGAGAAAGATACATATGCAATTCACACTCATATGGCATACGAGATGTGGTGGAGAAATACTTAAGGCCTACATATCCCGACTACAAGTACCCCAAGAACCTTACCCATGCGGAGGAAGAAGTTCAACACCTTAGTTCCGAAAAATTGCAGAAGTTGGGTTGGACTTTCCGGCCAGTTGAGGAAACGCTTAATGATTCTATTGAAAGCTATCGGAAGGCTGGAATCGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

316

Amino Acids

35.29

Weight (kDa)

7.54

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	8 - 133	1.5e-10	NmrA-like family
Epimerase	PF01370	12 - 241	9.1e-22	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	14 - 193	7.4e-13	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	14 - 120	4e-09	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	16 - 181	1.9e-14	NAD(P)H-binding
NAD_binding_4	PF07993	92 - 190	3.7e-07	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccII	CGCG	1 cut(s)	489
AciI	CCGC	4 cut(s)	5, 246, 366, 824
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	2 cut(s)	228, 884
AfaI	GTAC	3 cut(s)	309, 461, 803
AfiI	CCNNNNNNNGG	3 cut(s)	94, 456, 826
AflII	CTTAAG	1 cut(s)	775
AgsI	TTSAA	6 cut(s)	154, 193, 236, 640, 839, 917
AhdI	GACNNNNNGTC	1 cut(s)	537
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	5 cut(s)	50, 160, 591, 674, 921
AluI	AGCT	5 cut(s)	50, 160, 591, 674, 921
Alw26I	GTCTC	2 cut(s)	126, 407
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	6 cut(s)	228, 327, 389, 557, 779, 884
ApeKI	GCWGC	2 cut(s)	243, 710
Asp700I	GAANNNNTTC	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	423, 557
AsuC2I	CCSGG	2 cut(s)	129, 383
AsuHPI	GGTGA	3 cut(s)	20, 346, 629
AsuII	TTCGAA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	423
AxyI	CCTNAGG	2 cut(s)	393, 705
BalI	TGGCCA	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	255, 697
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	129, 383
BcoDI	GTCTC	2 cut(s)	126, 407
BfmI	CTRYAG	2 cut(s)	360, 711
BfrI	CTTAAG	1 cut(s)	775
BisI	GCNGC	3 cut(s)	244, 366, 711
BlsI	GCNGC	3 cut(s)	245, 367, 712
Bme1390I	CCNGG	3 cut(s)	94, 129, 383
Bme18I	GGWCC	1 cut(s)	423
BmeRI	GACNNNNNGTC	1 cut(s)	537
BmgT120I	GGNCC	2 cut(s)	423, 557
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	3 cut(s)	94, 129, 383
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	2 cut(s)	179, 667
BmuI	ACTGGG	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	4 cut(s)	66, 72, 76, 518
Bpu14I	TTCGAA	1 cut(s)	470
BpuEI	CTTGAG	4 cut(s)	182, 296, 542, 644
BpuMI	CCSGG	2 cut(s)	129, 383
BsaJI	CCNNGG	2 cut(s)	93, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 456, 826
Bse1I	ACTGG	3 cut(s)	49, 650, 887
Bse21I	CCTNAGG	2 cut(s)	393, 705
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	93, 330
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	3 cut(s)	94, 456, 826
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	3 cut(s)	49, 650, 887
BseRI	GAGGAG	2 cut(s)	74, 77
BseXI	GCAGC	2 cut(s)	255, 697
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	6 cut(s)	230, 329, 391, 559, 781, 886
BsiSI	CCGG	3 cut(s)	128, 383, 883
BslI	CCNNNNNNNGG	3 cut(s)	94, 456, 826
BsmAI	GTCTC	2 cut(s)	126, 407
BsnI	GGCC	6 cut(s)	230, 329, 391, 559, 781, 886
Bsp119I	TTCGAA	1 cut(s)	470
Bsp143I	GATC	3 cut(s)	19, 397, 619
BspACI	CCGC	4 cut(s)	5, 246, 366, 824
BspANI	GGCC	6 cut(s)	230, 329, 391, 559, 781, 886
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	715
BspPI	GGATC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	470
BspTI	CTTAAG	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	3 cut(s)	49, 650, 887
BssECI	CCNNGG	2 cut(s)	93, 330
BssMI	GATC	3 cut(s)	19, 397, 619
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	118, 189, 535
Bst6I	CTCTTC	2 cut(s)	225, 332
BstAFI	CTTAAG	1 cut(s)	775
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	265, 319
BstDEI	CTNAG	3 cut(s)	393, 705, 845
BstF5I	GGATG	1 cut(s)	664
BstFNI	CGCG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	3 cut(s)	22, 400, 622
BstMAI	GTCTC	2 cut(s)	126, 407
BstMBI	GATC	3 cut(s)	19, 397, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 269, 565
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	3 cut(s)	92, 127, 381
BstSFI	CTRYAG	2 cut(s)	360, 711
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	255, 697
BstV2I	GAAGAC	1 cut(s)	244
Bsu36I	CCTNAGG	2 cut(s)	393, 705
BsuRI	GGCC	6 cut(s)	230, 329, 391, 559, 781, 886
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	2 cut(s)	180, 680
Cac8I	GCNNGC	2 cut(s)	265, 319
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	423, 557
Csp6I	GTAC	3 cut(s)	308, 460, 802
CviAII	CATG	3 cut(s)	110, 257, 821
CviQI	GTAC	3 cut(s)	308, 460, 802
DdeI	CTNAG	3 cut(s)	393, 705, 845
DpnI	GATC	3 cut(s)	21, 399, 621
DpnII	GATC	3 cut(s)	19, 397, 619
DrdI	GACNNNNNNGTC	1 cut(s)	421
DriI	GACNNNNNGTC	1 cut(s)	537
DseDI	GACNNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	228, 884
Eam1104I	CTCTTC	2 cut(s)	225, 332
Eam1105I	GACNNNNNGTC	1 cut(s)	537
EarI	CTCTTC	2 cut(s)	225, 332
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	423
Eco81I	CCTNAGG	2 cut(s)	393, 705
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	113, 260, 824
FatI	CATG	3 cut(s)	109, 256, 820
FauNDI	CATATG	2 cut(s)	728, 745
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	244, 366, 711
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	3 cut(s)	244, 366, 711
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	3 cut(s)	244, 366, 711
GsuI	CTGGAG	4 cut(s)	66, 72, 76, 518
HaeIII	GGCC	6 cut(s)	230, 329, 391, 559, 781, 886
HapII	CCGG	3 cut(s)	128, 383, 883
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	3 cut(s)	113, 260, 824
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	215, 249, 626, 908, 936
HpaII	CCGG	3 cut(s)	128, 383, 883
HphI	GGTGA	3 cut(s)	20, 346, 629
Hpy166II	GTNNAC	2 cut(s)	79, 178
Hpy188I	TCNGA	3 cut(s)	24, 853, 927
Hpy188III	TCNNGA	6 cut(s)	278, 431, 497, 623, 665, 791
Hpy8I	GTNNAC	2 cut(s)	79, 178
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	3 cut(s)	230, 552, 922
HpyCH4III	ACNGT	3 cut(s)	118, 189, 535
HpyCH4V	TGCA	9 cut(s)	243, 321, 568, 585, 680, 692, 713, 732, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 269, 565
HpyF3I	CTNAG	3 cut(s)	393, 705, 845
Hsp92II	CATG	3 cut(s)	113, 260, 824
HspAI	GCGC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 397, 619
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	2 cut(s)	255, 697
LweI	GCATC	2 cut(s)	179, 667
MaeIII	GTNAC	2 cut(s)	40, 529
MalI	GATC	3 cut(s)	21, 399, 621
MboI	GATC	3 cut(s)	19, 397, 619
MboII	GAAGA	4 cut(s)	212, 244, 349, 842
MfeI	CAATTG	1 cut(s)	580
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	4 cut(s)	580, 640, 733, 857
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	3 cut(s)	209, 258, 635
MmeI	TCCRAC	2 cut(s)	186, 854
Mox20I	TGGCCA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	834
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	2 cut(s)	776, 903
MslI	CAYNNNNRTG	2 cut(s)	602, 744
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	775
MspI	CCGG	3 cut(s)	128, 383, 883
MspR9I	CCNGG	3 cut(s)	94, 129, 383
MunI	CAATTG	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	3 cut(s)	11, 269, 565
NciI	CCSGG	2 cut(s)	129, 383
NdeI	CATATG	2 cut(s)	728, 745
NdeII	GATC	3 cut(s)	19, 397, 619
NlaIII	CATG	3 cut(s)	113, 260, 824
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	40, 529
NspV	TTCGAA	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	908, 936
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	245, 367, 712
PleI	GAGTC	3 cut(s)	209, 257, 634
PpsI	GAGTC	3 cut(s)	209, 257, 634
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	423, 557
PstI	CTGCAG	1 cut(s)	715
RsaI	GTAC	3 cut(s)	309, 461, 803
RsaNI	GTAC	3 cut(s)	308, 460, 802
RseI	CAYNNNNRTG	2 cut(s)	602, 744
SaqAI	TTAA	2 cut(s)	776, 903
SatI	GCNGC	3 cut(s)	244, 366, 711
Sau3AI	GATC	3 cut(s)	19, 397, 619
Sau96I	GGNCC	2 cut(s)	423, 557
SchI	GAGTC	3 cut(s)	209, 258, 635
ScrFI	CCNGG	3 cut(s)	94, 129, 383
SfaNI	GCATC	2 cut(s)	179, 667
SfcI	CTRYAG	2 cut(s)	360, 711
SfuI	TTCGAA	1 cut(s)	470
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	602, 744
SmlI	CTYRAG	5 cut(s)	161, 311, 521, 623, 775
SmoI	CTYRAG	5 cut(s)	161, 311, 521, 623, 775
Sse9I	AATT	4 cut(s)	580, 640, 733, 857
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	4 cut(s)	5, 246, 366, 824
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	3 cut(s)	92, 127, 381
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	118, 189, 535
TaqI	TCGA	2 cut(s)	279, 470
TasI	AATT	4 cut(s)	580, 640, 733, 857
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	908, 936
Tru1I	TTAA	2 cut(s)	776, 903
Tru9I	TTAA	2 cut(s)	776, 903
TscAI	CASTG	2 cut(s)	180, 687
TseFI	GTSAC	2 cut(s)	40, 529
TseI	GCWGC	2 cut(s)	243, 710
Tsp45I	GTSAC	2 cut(s)	40, 529
TspDTI	ATGAA	3 cut(s)	98, 392, 455
TspGWI	ACGGA	2 cut(s)	415, 491
TspRI	CASTG	2 cut(s)	180, 687
Van91I	CCANNNNNTGG	1 cut(s)	456
Vha464I	CTTAAG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	642
XmnI	GAANNNNTTC	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.