Rmu_sc0003814.1_g000009

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003814.1
OG0001551
Physical Location & Seq
Forward (+)
26279 .. 27425
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003814.1_g000009.1.cds

Sequence Viewer

Length: 699 bp
atgcagagagaatttatcgaacctgctgtaaggggcacacggaatgtactagatgcatgtatcaaggcaaaagtaaagagggtcgtggtggtttcatctgctggtgctgttatatacaacccaaaatggcccaaggataaacccatggatgaagaatgttggtctgacccagagtattgcaagaaagctaagacccagtttggcaactattgtcttgccaagacaatggcagaaactgaagctttggagtatgcaaagaaaagtgaattgagaatcattactgtttgtccatcctttgtttttggtccaatgctgcaatcaacattaaatgccagtaactcattgctcataactcttctaaaagatggactggaatctgttgagaaccgtgctcgtcctgttgttgatgtgcgtgatgtagctgaagctctacttctggcatatgaagagccagaagcagaaggcagatacatttgtacgtcttacgtgatcaaggtgcagcctttggtggagatgttgaagggcctgtatccaaattataactaccctaaaagaatcattggagcggttgaagacgtgaagatgagttcagagaaattgcagaaacttggttggaagtataggccattagaggagactattgttgatgctgtcaacaactatatgaagcaagtggtatcctctgcaaataaagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

232

Amino Acids

26.23

Weight (kDa)

8.09

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 31
AccBSI CCGCTC 1 cut(s) 566
AciI CCGC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 2 cut(s) 258, 444
AfaI GTAC 2 cut(s) 48, 478
AgsI TTSAA 2 cut(s) 520, 572
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 4 cut(s) 188, 242, 422, 428
AluI AGCT 4 cut(s) 188, 242, 422, 428
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 629
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 3 cut(s) 128, 523, 623
ApeKI GCWGC 2 cut(s) 313, 499
ApoI RAATTY 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 129, 305, 523
AvaII GGWCC 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 460, 493
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 2 cut(s) 300, 511
BccI CCATC 2 cut(s) 298, 359
BciVI GTATCC 2 cut(s) 540, 688
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 629
BfaI CTAG 2 cut(s) 50, 697
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 2 cut(s) 540, 688
BisI GCNGC 2 cut(s) 314, 500
BlsI GCNGC 2 cut(s) 315, 501
Bme18I GGWCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 129, 305, 523
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 43, 637
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 132, 144
Bse1I ACTGG 3 cut(s) 196, 333, 375
Bse3DI GCAATG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 132, 144
BseGI GGATG 2 cut(s) 154, 290
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 3 cut(s) 196, 333, 375
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 2 cut(s) 300, 511
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 3 cut(s) 130, 525, 625
BsiHKAI GWGCWC 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 629
BsnI GGCC 3 cut(s) 130, 525, 625
Bsp1286I GDGCHC 2 cut(s) 38, 394
Bsp143I GATC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 1 cut(s) 566
BspANI GGCC 3 cut(s) 130, 525, 625
BspMI ACCTGC 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 3 cut(s) 196, 333, 375
BssECI CCNNGG 2 cut(s) 132, 144
BssMI GATC 1 cut(s) 489
BssT1I CCWWGG 2 cut(s) 132, 144
Bst4CI ACNGT 2 cut(s) 283, 389
Bst6I CTCTTC 2 cut(s) 360, 441
BstBAI YACGTR 1 cut(s) 487
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 154, 290
BstKTI GATC 1 cut(s) 492
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 300, 511
BstV2I GAAGAC 1 cut(s) 579
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuI GTATCC 2 cut(s) 540, 688
BsuRI GGCC 3 cut(s) 130, 525, 625
BtgI CCRYGG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 154, 290
BveI ACCTGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 129, 305, 523
Csp6I GTAC 2 cut(s) 47, 477
CviAII CATG 2 cut(s) 57, 145
CviJI RGCY 9 cut(s) 130, 188, 242, 422, 428, 451, 502, 525, 625
CviKI_1 RGCY 9 cut(s) 130, 188, 242, 422, 428, 451, 502, 525, 625
CviQI GTAC 2 cut(s) 47, 477
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 491
DpnII GATC 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 360, 441
EarI CTCTTC 2 cut(s) 360, 441
Eco130I CCWWGG 2 cut(s) 132, 144
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 258, 444
EcoO109I RGGNCCY 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 132, 144
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 132, 144
FaeI CATG 2 cut(s) 60, 148
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FatI CATG 2 cut(s) 56, 144
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 2 cut(s) 314, 500
FokI GGATG 2 cut(s) 161, 277
Fsp4HI GCNGC 2 cut(s) 314, 500
FspBI CTAG 2 cut(s) 50, 697
GluI GCNGC 2 cut(s) 314, 500
HaeIII GGCC 3 cut(s) 130, 525, 625
Hin1II CATG 2 cut(s) 60, 148
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 3 cut(s) 273, 374, 555
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 2 cut(s) 166, 592
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 2 cut(s) 455, 514
HpyCH4III ACNGT 2 cut(s) 283, 389
HpyCH4IV ACGT 3 cut(s) 479, 486, 576
HpyCH4V TGCA 8 cut(s) 4, 56, 180, 254, 316, 499, 601, 686
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 3 cut(s) 479, 486, 576
Hsp92II CATG 2 cut(s) 60, 148
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 1 cut(s) 489
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 2 cut(s) 300, 511
LweI GCATC 2 cut(s) 43, 637
MaeI CTAG 2 cut(s) 50, 697
MaeII ACGT 3 cut(s) 479, 486, 576
MaeIII GTNAC 1 cut(s) 335
MalI GATC 1 cut(s) 491
MbiI CCGCTC 1 cut(s) 566
MboI GATC 1 cut(s) 489
MboII GAAGA 5 cut(s) 164, 347, 458, 584, 592
MhlI GDGCHC 2 cut(s) 38, 394
MluCI AATT 4 cut(s) 11, 266, 535, 596
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 3 cut(s) 72, 625, 691
Mph1103I ATGCAT 1 cut(s) 58
MseI TTAA 1 cut(s) 326
NcoI CCATGG 1 cut(s) 144
NdeI CATATG 1 cut(s) 442
NdeII GATC 1 cut(s) 489
NlaIII CATG 2 cut(s) 60, 148
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 441
PfeI GAWTC 3 cut(s) 273, 374, 555
PkrI GCNGC 2 cut(s) 315, 501
Ppu21I YACGTR 1 cut(s) 487
PsiI TTATAA 1 cut(s) 540
PspPI GGNCC 3 cut(s) 129, 305, 523
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 48, 478
RsaNI GTAC 2 cut(s) 47, 477
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 2 cut(s) 314, 500
Sau3AI GATC 1 cut(s) 489
Sau96I GGNCC 3 cut(s) 129, 305, 523
SduI GDGCHC 2 cut(s) 38, 394
SetI ASST 9 cut(s) 25, 190, 244, 424, 430, 482, 489, 498, 579
SfaNI GCATC 2 cut(s) 43, 637
SinI GGWCC 1 cut(s) 305
Sse9I AATT 4 cut(s) 11, 266, 535, 596
SsiI CCGC 1 cut(s) 566
SspMI CTAG 2 cut(s) 50, 697
StyI CCWWGG 2 cut(s) 132, 144
TaaI ACNGT 2 cut(s) 283, 389
TaiI ACGT 3 cut(s) 482, 489, 579
TaqI TCGA 1 cut(s) 18
TasI AATT 4 cut(s) 11, 266, 535, 596
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 3 cut(s) 273, 374, 555
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseI GCWGC 2 cut(s) 313, 499
TspDTI ATGAA 4 cut(s) 84, 165, 459, 680
TspGWI ACGGA 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 60
XspI CTAG 2 cut(s) 50, 697
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.