Prupe.5G005000_v2.0.a1

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001551
Physical Location & Seq
Forward (+)
609148 .. 611053
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G005000.1

Sequence Viewer

Length: 963 bp
ATGGCGGGTGAGAAAGAAAAAGTATGCGTGACTGGGGCTGGAGGATTTGCAGCCTCTTGGGTCGTCAACCTTCTTCTCTCAAAGGACTATGTTGTTCATGGAACAGTCAGACAGCCAGGGGTGAGCAAGTATGCTCACTTGAACAAGCTTGAGAAAGCATCAGAGAACTTGAAACTTTTTAAGGCAGATTTGTTGGACTACGATTCTCTGCGTTCGGCTGTTGAAGGATGTAGTGGAGTATTCCATGTTGCCAGTCCCGCTGTTCTTAGTGTTACAGATCCTGATCAGGAGCTTCTTGAACCAGCTGTCAAGGGAACGCTTAATGTACTTAAGGCTTGCGTCGAAGCCAAAGTGAAGAGAGTTGTTGTTGTGTCCTCCATAGCTGCTATTGTTATGAACCCTGACTGGCCCAAGGGTCAAGTCAAGGACGAGACCTGTTGGTCTGTTCCTGAATATATTAAAACGACCAAGAAATGGTACTATCTTTCAAAAACAGAAGCTGAAAGCCAGGCTTTGGAGTTTGGAAAAAGAAATGAACTTGAGGTTGTAACTGTTTGTCCTTCTGTCGTTTTGGGGCCAATTTTGCAATCCACGTTGAATTTAAGTAGCTCTCTGCTAGTTGCGACTGTAAAAGGTGAGCTTGAGTCATTGGAATACAATTACTGGACGCTCGTGGATGTTCGTGATTTAGCAGAATCACTGCTTCTTGTATACAACAAGTCTGAGGCCGGAGAGAGATACATATGCACATCGCACGAGATCGGGGTAGAGGAAGTGGTGGAGAAGTACTTGAGGCCTGCATATCCTAACTACAACTATCCCAACAACCTTACCCACACAGAGGAAGAAAAAGAGCACTTAAGTTCGGAAAAATTGCAGAGGTTGGGTTGGACTTTCCGGCCTGTGGATGAAACTCTTATTGATTCCATTGAAAGCTACCGGAAGGCTGGAATTGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

321

Amino Acids

35.61

Weight (kDa)

5.28

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 439
AccB7I CCANNNNNTGG 2 cut(s) 474, 514
AccI GTMKAC 1 cut(s) 711
AciI CCGC 2 cut(s) 5, 258
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 598
AfaI GTAC 3 cut(s) 327, 479, 788
AfiI CCNNNNNNNGG 4 cut(s) 474, 514, 841, 904
AflII CTTAAG 2 cut(s) 329, 859
AgsI TTSAA 7 cut(s) 142, 172, 224, 299, 489, 598, 932
AjnI CCWGG 2 cut(s) 115, 507
AluBI AGCT 8 cut(s) 148, 292, 305, 383, 500, 609, 640, 936
AluI AGCT 8 cut(s) 148, 292, 305, 383, 500, 609, 640, 936
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 2 cut(s) 281, 500
AoxI GGCC 5 cut(s) 407, 575, 726, 794, 899
ApeKI GCWGC 2 cut(s) 50, 383
ApoI RAATTY 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 408, 575
AsuHPI GGTGA 3 cut(s) 20, 133, 647
BauI CACGAG 2 cut(s) 671, 755
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 2 cut(s) 62, 370
BciT130I CCWGG 2 cut(s) 117, 509
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 617
BfrI CTTAAG 2 cut(s) 329, 859
BisI GCNGC 2 cut(s) 51, 384
BlsI GCNGC 2 cut(s) 52, 385
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 2 cut(s) 117, 509
BmgT120I GGNCC 2 cut(s) 408, 575
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 2 cut(s) 117, 509
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 4 cut(s) 170, 560, 662, 811
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 116, 411
BsaWI WCCGGW 1 cut(s) 939
Bsc4I CCNNNNNNNGG 4 cut(s) 474, 514, 841, 904
Bse1I ACTGG 4 cut(s) 37, 252, 410, 668
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 2 cut(s) 117, 509
BseDI CCNNGG 2 cut(s) 116, 411
BseGI GGATG 3 cut(s) 233, 682, 913
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 4 cut(s) 474, 514, 841, 904
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 4 cut(s) 37, 252, 410, 668
BseXI GCAGC 2 cut(s) 62, 370
BshFI GGCC 5 cut(s) 409, 577, 728, 796, 901
BsiHKAI GWGCWC 1 cut(s) 858
BsiSI CCGG 3 cut(s) 729, 898, 940
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 4 cut(s) 474, 514, 841, 904
BsmAI GTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 5 cut(s) 409, 577, 728, 796, 901
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 858
Bsp143I GATC 3 cut(s) 277, 283, 759
BspACI CCGC 2 cut(s) 5, 258
BspANI GGCC 5 cut(s) 409, 577, 728, 796, 901
BspCNI CTCAG 1 cut(s) 715
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 1 cut(s) 272
BspTI CTTAAG 2 cut(s) 329, 859
BspTNI GGTCTC 1 cut(s) 425
BsrI ACTGG 4 cut(s) 37, 252, 410, 668
BssECI CCNNGG 2 cut(s) 116, 411
BssMI GATC 3 cut(s) 277, 283, 759
BssNAI GTATAC 1 cut(s) 712
BssSI CACGAG 2 cut(s) 671, 755
BssT1I CCWWGG 1 cut(s) 411
Bst1107I GTATAC 1 cut(s) 712
Bst2BI CACGAG 2 cut(s) 671, 755
Bst2UI CCWGG 2 cut(s) 117, 509
Bst4CI ACNGT 3 cut(s) 106, 553, 628
Bst6I CTCTTC 1 cut(s) 350
BstAFI CTTAAG 2 cut(s) 329, 859
BstC8I GCNNGC 2 cut(s) 337, 798
BstDEI CTNAG 2 cut(s) 266, 723
BstF5I GGATG 3 cut(s) 233, 682, 913
BstKTI GATC 3 cut(s) 280, 286, 762
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 277, 283, 759
BstMWI GCNNNNNNNGC 2 cut(s) 257, 583
BstNI CCWGG 2 cut(s) 117, 509
BstSCI CCNGG 2 cut(s) 115, 507
BstV1I GCAGC 2 cut(s) 62, 370
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZ17I GTATAC 1 cut(s) 712
BsuRI GGCC 5 cut(s) 409, 577, 728, 796, 901
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 3 cut(s) 233, 682, 913
BtsI GCAGTG 1 cut(s) 698
BtsIMutI CAGTG 1 cut(s) 698
Cac8I GCNNGC 2 cut(s) 337, 798
CaiI CAGNNNCTG 2 cut(s) 281, 500
Cfr13I GGNCC 2 cut(s) 408, 575
CseI GACGC 2 cut(s) 328, 676
Csp6I GTAC 3 cut(s) 326, 478, 787
CviAII CATG 2 cut(s) 98, 245
CviQI GTAC 3 cut(s) 326, 478, 787
DdeI CTNAG 2 cut(s) 266, 723
DpnI GATC 3 cut(s) 279, 285, 761
DpnII GATC 3 cut(s) 277, 283, 759
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 115, 507
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 2 cut(s) 101, 248
FalI AAGNNNNNCTT 4 cut(s) 496, 528, 624, 656
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 97, 244
FauI CCCGC 1 cut(s) 265
FauNDI CATATG 1 cut(s) 743
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 2 cut(s) 51, 384
FokI GGATG 3 cut(s) 240, 689, 920
Fsp4HI GCNGC 2 cut(s) 51, 384
FspBI CTAG 1 cut(s) 617
GluI GCNGC 2 cut(s) 51, 384
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 5 cut(s) 409, 577, 728, 796, 901
HapII CCGG 3 cut(s) 729, 898, 940
HgaI GACGC 2 cut(s) 328, 676
Hin1II CATG 2 cut(s) 101, 248
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 4 cut(s) 203, 644, 695, 923
HpaII CCGG 3 cut(s) 729, 898, 940
HphI GGTGA 3 cut(s) 20, 133, 647
Hpy166II GTNNAC 3 cut(s) 67, 712, 958
Hpy188I TCNGA 4 cut(s) 110, 163, 724, 868
Hpy188III TCNNGA 5 cut(s) 281, 287, 296, 449, 683
Hpy8I GTNNAC 3 cut(s) 67, 712, 958
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 4 cut(s) 80, 218, 570, 937
HpyCH4III ACNGT 3 cut(s) 106, 553, 628
HpyCH4IV ACGT 1 cut(s) 593
HpyCH4V TGCA 5 cut(s) 50, 586, 747, 800, 877
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 583
HpyF3I CTNAG 2 cut(s) 266, 723
HpySE526I ACGT 1 cut(s) 593
Hsp92II CATG 2 cut(s) 101, 248
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 3 cut(s) 277, 283, 759
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 62, 370
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 617
MaeII ACGT 1 cut(s) 593
MaeIII GTNAC 3 cut(s) 28, 271, 547
MalI GATC 3 cut(s) 279, 285, 761
MboI GATC 3 cut(s) 277, 283, 759
MboII GAAGA 3 cut(s) 65, 367, 857
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 858
MluCI AATT 5 cut(s) 579, 598, 658, 872, 951
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 2 cut(s) 174, 869
MnlI CCTC 9 cut(s) 35, 64, 385, 535, 718, 763, 786, 835, 873
MseI TTAA 6 cut(s) 180, 321, 330, 459, 602, 860
MspA1I CMGCKG 2 cut(s) 260, 305
MspCI CTTAAG 2 cut(s) 329, 859
MspI CCGG 3 cut(s) 729, 898, 940
MspR9I CCNGG 2 cut(s) 117, 509
MvaI CCWGG 2 cut(s) 117, 509
MwoI GCNNNNNNNGC 2 cut(s) 257, 583
NdeI CATATG 1 cut(s) 743
NdeII GATC 3 cut(s) 277, 283, 759
NlaIII CATG 2 cut(s) 101, 248
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 796
PfeI GAWTC 3 cut(s) 203, 695, 923
PflMI CCANNNNNTGG 2 cut(s) 474, 514
PkrI GCNGC 2 cut(s) 52, 385
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 115, 507
PspGI CCWGG 2 cut(s) 115, 507
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 2 cut(s) 408, 575
PstNI CAGNNNCTG 2 cut(s) 281, 500
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 3 cut(s) 327, 479, 788
RsaNI GTAC 3 cut(s) 326, 478, 787
SaqAI TTAA 6 cut(s) 180, 321, 330, 459, 602, 860
SatI GCNGC 2 cut(s) 51, 384
Sau3AI GATC 3 cut(s) 277, 283, 759
Sau96I GGNCC 2 cut(s) 408, 575
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 2 cut(s) 117, 509
SduI GDGCHC 1 cut(s) 858
SfaNI GCATC 1 cut(s) 167
SmlI CTYRAG 6 cut(s) 149, 329, 539, 641, 790, 859
SmoI CTYRAG 6 cut(s) 149, 329, 539, 641, 790, 859
Sse9I AATT 5 cut(s) 579, 598, 658, 872, 951
SseBI AGGCCT 1 cut(s) 796
SsiI CCGC 2 cut(s) 5, 258
SspMI CTAG 1 cut(s) 617
StuI AGGCCT 1 cut(s) 796
StyD4I CCNGG 2 cut(s) 115, 507
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 106, 553, 628
TaiI ACGT 1 cut(s) 596
TaqI TCGA 1 cut(s) 342
TasI AATT 5 cut(s) 579, 598, 658, 872, 951
TatI WGTACW 2 cut(s) 325, 786
TfiI GAWTC 3 cut(s) 203, 695, 923
Tru1I TTAA 6 cut(s) 180, 321, 330, 459, 602, 860
Tru9I TTAA 6 cut(s) 180, 321, 330, 459, 602, 860
TscAI CASTG 1 cut(s) 705
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 50, 383
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 4 cut(s) 86, 410, 549, 924
TspRI CASTG 1 cut(s) 705
Van91I CCANNNNNTGG 2 cut(s) 474, 514
Vha464I CTTAAG 2 cut(s) 329, 859
XapI RAATTY 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 711
XspI CTAG 1 cut(s) 617
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.