AT2G24560

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001786
Physical Location & Seq
Forward (+)
10431260 .. 10433074
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24560.2

Sequence Viewer

Length: 1092 bp
ATGTCGACTTCTAAGACCATAACCTTCACTCTCTTCATAGCAGCACTACTCTCGTCCTGCGACGCAGCCACAAACGCTACATCGCAACCACTATTTCCAGCGATTCTTATCTTTGGCGATTCAACAGTTGACACAGGTAACAACAACTACCACTCACAAACAATCTTCAAAGCCAAACATCTTCCTTACGGAATCGATCTCCCAAACCACAAAGCTAGTGGAAGATTTACAAATGGCAAAATCTTTTCCGACATAATCGCAACAAAACTCAACATCAAACAGTTTGTTCCTCCCTTCTTACAACCAAATCTCTCTGACCAAGAGATTGTAACCGGAGTCTGTTTTGCATCAGCCGGTGCGGGTTACGATGACCATACCAGTCTCTCTACGCAAGCGATTCGTGTCTTGGACCAACAAAAGATGTTCAAGAATTACATTGCTCGTCTTAAAAGTATCGTAGGAGACAAGAAAGCTATGGAAATCATAAAAAATGCTTTGGTGGTTATAAGTGCAGGGCCTAACGATTTTATCTTGAACTATTACGATATTCCTTCAAGGCGTCTTGAGTTTCCTCACATTTCTGGTTACCAAGACTTTGTTCTTCAAAGGCTTGACAATTTCGTGCGGGAGCTTTACAGTTTAGGTTGCCGGAAAATTATGGTAGGAGGTTTACCGCCGATGGGTTGTTTACCGATTCAAATGACTGCTAAATTCCGAAACGCTCTAAGGTTCTGCTTGGAACAAGAGAACCGAGACTCTGTCTTATACAATCAGAAACTTCAGAATCTATTACCTCAAATCGAAGCATCGCTTACAGGAAGCAAGATCCTTTACTCCAATGTCTATGACCCTATGATGGACATGATGCAAAACCCTAGCAAATACGGATTTAAAGAGACGAAGAGAGGATGTTGTGGAACAGGGCATTTGGAGACGAGCTTCATGTGTAATGCTTTTTCTCCAACGTGTAGAAATCACTCGGAGTTTTTGTTCTTTGACTCGATTCATCCATCCGAAGCTACTTATAATTATATGGGCAATTTTCTAGATACTCAGATCCGCGTGTGGCTTAGCTTGAGGCTTAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

363

Amino Acids

40.81

Weight (kDa)

8.74

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 290 1.9e-21 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 506, 1026
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 1062
AciI CCGC 4 cut(s) 359, 625, 674, 1060
AclWI GGATC 2 cut(s) 820, 1051
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 1 cut(s) 764
AcyI GRCGYC 1 cut(s) 559
AfiI CCNNNNNNNGG 2 cut(s) 680, 856
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 1 cut(s) 965
AgsI TTSAA 7 cut(s) 123, 169, 427, 535, 555, 605, 698
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AloI GAACNNNNNNTCC 2 cut(s) 974, 1006
AluBI AGCT 6 cut(s) 215, 473, 631, 939, 1019, 1074
AluI AGCT 6 cut(s) 215, 473, 631, 939, 1019, 1074
Alw26I GTCTC 5 cut(s) 386, 456, 747, 890, 926
AlwI GGATC 2 cut(s) 820, 1051
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 2 cut(s) 41, 65
ApoI RAATTY 1 cut(s) 710
AspS9I GGNCC 2 cut(s) 409, 515
AvaII GGWCC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 53, 77
BccI CCATC 3 cut(s) 673, 850, 1018
BcgI CGANNNNNNTGC 4 cut(s) 33, 67, 380, 414
BcoDI GTCTC 5 cut(s) 386, 456, 747, 890, 926
BfaI CTAG 3 cut(s) 216, 876, 1046
BfrI CTTAAG 1 cut(s) 1082
BisI GCNGC 2 cut(s) 42, 66
BlpI GCTNAGC 1 cut(s) 1070
BlsI GCNGC 2 cut(s) 43, 67
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 409, 515
BmsI GCATC 3 cut(s) 356, 815, 855
Bpu1102I GCTNAGC 1 cut(s) 1070
BpuEI CTTGAG 1 cut(s) 584
Bsa29I ATCGAT 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 559
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 856
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 107
BseCI ATCGAT 1 cut(s) 195
BseGI GGATG 3 cut(s) 914, 1006, 1010
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 680, 856
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 1067
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 53, 77
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 1062
BshFI GGCC 1 cut(s) 517
BshVI ATCGAT 1 cut(s) 195
BsiSI CCGG 3 cut(s) 333, 354, 649
BslI CCNNNNNNNGG 2 cut(s) 680, 856
BsmAI GTCTC 5 cut(s) 386, 456, 747, 890, 926
BsmBI CGTCTC 2 cut(s) 890, 926
BsnI GGCC 1 cut(s) 517
Bsp143I GATC 3 cut(s) 196, 825, 1056
Bsp1720I GCTNAGC 1 cut(s) 1070
BspACI CCGC 4 cut(s) 359, 625, 674, 1060
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 1 cut(s) 1066
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 1062
BspPI GGATC 2 cut(s) 820, 1051
BspTI CTTAAG 1 cut(s) 1082
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 378
BssAI RCCGGY 1 cut(s) 353
BssMI GATC 3 cut(s) 196, 825, 1056
BssNI GRCGYC 1 cut(s) 559
Bst4CI ACNGT 3 cut(s) 127, 282, 638
Bst6I CTCTTC 2 cut(s) 38, 896
BstACI GRCGYC 1 cut(s) 559
BstAFI CTTAAG 1 cut(s) 1082
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 4 cut(s) 12, 725, 1053, 1070
BstEII GGTNACC 1 cut(s) 584
BstF5I GGATG 3 cut(s) 914, 1006, 1010
BstFNI CGCG 1 cut(s) 1062
BstKTI GATC 3 cut(s) 199, 828, 1059
BstMAI GTCTC 5 cut(s) 386, 456, 747, 890, 926
BstMBI GATC 3 cut(s) 196, 825, 1056
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 584
BstUI CGCG 1 cut(s) 1062
BstV1I GCAGC 2 cut(s) 53, 77
BstX2I RGATCY 2 cut(s) 825, 1056
BstYI RGATCY 2 cut(s) 825, 1056
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 1 cut(s) 517
BsuTUI ATCGAT 1 cut(s) 195
BtgZI GCGATG 2 cut(s) 66, 792
BtsCI GGATG 3 cut(s) 914, 1006, 1010
Cac8I GCNNGC 1 cut(s) 393
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 2 cut(s) 409, 515
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 2 cut(s) 71, 548
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 2 cut(s) 862, 943
DdeI CTNAG 4 cut(s) 12, 725, 1053, 1070
DpnI GATC 3 cut(s) 198, 827, 1058
DpnII GATC 3 cut(s) 196, 825, 1056
DraI TTTAAA 1 cut(s) 892
Eam1104I CTCTTC 2 cut(s) 38, 896
EarI CTCTTC 2 cut(s) 38, 896
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 764
Eco91I GGTNACC 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 584
Esp3I CGTCTC 2 cut(s) 890, 926
FaeI CATG 2 cut(s) 865, 946
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FatI CATG 2 cut(s) 861, 942
FauI CCCGC 2 cut(s) 352, 618
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 42, 66
FokI GGATG 3 cut(s) 921, 993, 997
Fsp4HI GCNGC 2 cut(s) 42, 66
FspBI CTAG 3 cut(s) 216, 876, 1046
GluI GCNGC 2 cut(s) 42, 66
HaeIII GGCC 1 cut(s) 517
HapII CCGG 3 cut(s) 333, 354, 649
HgaI GACGC 2 cut(s) 71, 548
Hin1I GRCGYC 1 cut(s) 559
Hin1II CATG 2 cut(s) 865, 946
HincII GTYRAC 2 cut(s) 6, 130
HindII GTYRAC 2 cut(s) 6, 130
HpaII CCGG 3 cut(s) 333, 354, 649
Hpy166II GTNNAC 4 cut(s) 6, 130, 671, 689
Hpy188I TCNGA 8 cut(s) 250, 316, 716, 774, 783, 982, 1015, 1056
Hpy188III TCNNGA 4 cut(s) 427, 532, 563, 1046
Hpy8I GTNNAC 4 cut(s) 6, 130, 671, 689
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 34, 304, 561
HpyCH4III ACNGT 3 cut(s) 127, 282, 638
HpyCH4IV ACGT 1 cut(s) 965
HpyCH4V TGCA 3 cut(s) 347, 512, 868
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 4 cut(s) 12, 725, 1053, 1070
HpySE526I ACGT 1 cut(s) 965
Hsp92I GRCGYC 1 cut(s) 559
Hsp92II CATG 2 cut(s) 865, 946
Kzo9I GATC 3 cut(s) 196, 825, 1056
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 2 cut(s) 53, 77
LweI GCATC 3 cut(s) 356, 815, 855
MaeI CTAG 3 cut(s) 216, 876, 1046
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 4 cut(s) 137, 328, 362, 584
MalI GATC 3 cut(s) 198, 827, 1058
MboI GATC 3 cut(s) 196, 825, 1056
MboII GAAGA 6 cut(s) 25, 157, 173, 234, 593, 913
MflI RGATCY 2 cut(s) 825, 1056
MluCI AATT 6 cut(s) 430, 616, 654, 710, 1027, 1039
MlyI GAGTC 3 cut(s) 345, 749, 992
MmeI TCCRAC 2 cut(s) 273, 986
MnlI CCTC 6 cut(s) 300, 582, 659, 804, 899, 1071
MseI TTAA 3 cut(s) 447, 891, 1083
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 3 cut(s) 333, 354, 649
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 3 cut(s) 196, 825, 1056
NlaIII CATG 2 cut(s) 865, 946
PfeI GAWTC 7 cut(s) 103, 119, 192, 397, 694, 784, 1003
PflFI GACNNNGTC 1 cut(s) 758
PkrI GCNGC 2 cut(s) 43, 67
PleI GAGTC 3 cut(s) 344, 749, 992
PpsI GAGTC 3 cut(s) 344, 749, 992
PsiI TTATAA 2 cut(s) 506, 1026
PspEI GGTNACC 1 cut(s) 584
PspPI GGNCC 2 cut(s) 409, 515
PsuI RGATCY 2 cut(s) 825, 1056
PsyI GACNNNGTC 1 cut(s) 758
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 447, 891, 1083
SatI GCNGC 2 cut(s) 42, 66
Sau3AI GATC 3 cut(s) 196, 825, 1056
Sau96I GGNCC 2 cut(s) 409, 515
SchI GAGTC 3 cut(s) 345, 749, 992
SfaNI GCATC 3 cut(s) 356, 815, 855
SinI GGWCC 1 cut(s) 409
SmlI CTYRAG 3 cut(s) 563, 1075, 1082
SmoI CTYRAG 3 cut(s) 563, 1075, 1082
Sse9I AATT 6 cut(s) 430, 616, 654, 710, 1027, 1039
SsiI CCGC 4 cut(s) 359, 625, 674, 1060
SspMI CTAG 3 cut(s) 216, 876, 1046
TaaI ACNGT 3 cut(s) 127, 282, 638
TaiI ACGT 1 cut(s) 968
TaqI TCGA 4 cut(s) 5, 195, 801, 1001
TasI AATT 6 cut(s) 430, 616, 654, 710, 1027, 1039
TfiI GAWTC 7 cut(s) 103, 119, 192, 397, 694, 784, 1003
Tru1I TTAA 3 cut(s) 447, 891, 1083
Tru9I TTAA 3 cut(s) 447, 891, 1083
TseI GCWGC 2 cut(s) 41, 65
TspDTI ATGAA 3 cut(s) 25, 931, 995
TspGWI ACGGA 2 cut(s) 204, 900
Tth111I GACNNNGTC 1 cut(s) 758
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 710
XbaI TCTAGA 1 cut(s) 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 216, 876, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.