Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Reverse (-)

4536098 .. 4536812

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1056900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCAGAAAATGGTAATAGCAGTGCTTCCTCCAATTGGTTGCCTTCCATACAAAAATGAGCAACCCCAAGCCAACAAGGCTCTCCGCTTTACAAAGGTCGAAGTAAACGTCTATCGTTTTTTGGAAACAAAAAGAGGTTGCTGTGGTACTGGGTTTGTGGAAGCAGCTTACCAGTACCTCTCGAAGTACCTGGAGAAGAATGTGCTTCCCAAGCTTGCTTATCATAATCAATCGCAGCCGTTGATTACTCGGTCCGACCATCCCTATCGGGCAGATGATCGATACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

97

Amino Acids

11.21

Weight (kDa)

9.35

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	85
AfaI	GTAC	3 cut(s)	148, 176, 188
AfiI	CCNNNNNNNGG	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	167, 214
AluI	AGCT	2 cut(s)	167, 214
ApeKI	GCWGC	2 cut(s)	164, 235
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspS9I	GGNCC	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	176, 247
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	165, 236
BlsI	GCNGC	2 cut(s)	166, 237
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	154, 172, 290
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	280
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	154, 172, 290
BseXI	GCAGC	2 cut(s)	176, 247
BshVI	ATCGAT	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	85
BspDI	ATCGAT	1 cut(s)	280
BsrI	ACTGG	3 cut(s)	154, 172, 290
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 211
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	176, 247
Bsu15I	ATCGAT	1 cut(s)	280
BsuTUI	ATCGAT	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	252
ClaI	ATCGAT	1 cut(s)	280
CpoI	CGGWCCG	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	147, 175, 187
CspI	CGGWCCG	1 cut(s)	252
CviJI	RGCY	5 cut(s)	71, 80, 167, 214, 238
CviKI_1	RGCY	5 cut(s)	71, 80, 167, 214, 238
CviQI	GTAC	3 cut(s)	147, 175, 187
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	189
FaiI	YATR	2 cut(s)	49, 225
Fnu4HI	GCNGC	2 cut(s)	165, 236
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	165, 236
GluI	GCNGC	2 cut(s)	165, 236
GsuI	CTGGAG	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 211
HpySE526I	ACGT	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	135, 176, 185, 203, 271
Lsp1109I	GCAGC	2 cut(s)	176, 247
MaeII	ACGT	1 cut(s)	108
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	1 cut(s)	208
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	39, 128, 188
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	77, 211
NdeII	GATC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	166, 237
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	252
RsaI	GTAC	3 cut(s)	148, 176, 188
RsaNI	GTAC	3 cut(s)	147, 175, 187
Rsr2I	CGGWCCG	1 cut(s)	252
RsrII	CGGWCCG	1 cut(s)	252
SatI	GCNGC	2 cut(s)	165, 236
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	7 cut(s)	99, 111, 139, 169, 180, 192, 216
SinI	GGWCC	1 cut(s)	252
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	99, 182, 280
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	33
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	2 cut(s)	164, 235
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.