Rorug01G0359100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001786
Physical Location & Seq
Forward (+)
47508089 .. 47508903
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0359100.1

Sequence Viewer

Length: 726 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTAGTGGATCCATCAACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGTTCCACTGCTTCTACTGGAGGACAATCTTCCATGGAACAACGAGGAGGAGTTCGCCAGGAGTTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGTACGTCTATGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGGCTACTATTCCAGTGGCTCGGGCGGTTACAACGGTGGCTCTCACGTTTCTCTTGAGCTCAGCCTCAATCCTTCCGGAGCTGCTGACTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

25.61

Weight (kDa)

5.2

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 2.2e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 413
AccIII TCCGGA 1 cut(s) 704
AciI CCGC 1 cut(s) 654
AclWI GGATC 9 cut(s) 141, 330, 343, 378, 391, 411, 424, 459, 472
AfaI GTAC 3 cut(s) 91, 328, 584
AfiI CCNNNNNNNGG 3 cut(s) 329, 413, 575
AgsI TTSAA 1 cut(s) 551
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 3 cut(s) 92, 322, 540
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 5 cut(s) 7, 199, 410, 688, 710
AluI AGCT 5 cut(s) 7, 199, 410, 688, 710
Alw21I GWGCWC 3 cut(s) 177, 576, 690
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 572
AlwI GGATC 9 cut(s) 141, 330, 343, 378, 391, 411, 424, 459, 472
Ama87I CYCGRG 2 cut(s) 261, 649
Aor13HI TCCGGA 1 cut(s) 704
AoxI GGCC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 572
ApeKI GCWGC 3 cut(s) 50, 293, 710
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
Asp700I GAANNNNTTC 2 cut(s) 316, 555
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 2 cut(s) 261, 649
AvaII GGWCC 2 cut(s) 357, 438
BaeGI GKGCMC 3 cut(s) 164, 306, 576
BamHI GGATCC 4 cut(s) 335, 383, 416, 464
BanII GRGCYC 2 cut(s) 262, 690
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 3 cut(s) 177, 576, 690
BbvI GCAGC 3 cut(s) 62, 280, 697
BccI CCATC 2 cut(s) 26, 395
BceAI ACGGC 2 cut(s) 72, 592
BciT130I CCWGG 3 cut(s) 94, 324, 542
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 3 cut(s) 315, 378, 444
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 711
BlpI GCTNAGC 1 cut(s) 689
BlsI GCNGC 3 cut(s) 52, 295, 712
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 542
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 2 cut(s) 261, 649
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 8 cut(s) 245, 337, 358, 385, 418, 439, 466, 487
BmrFI CCNGG 4 cut(s) 55, 94, 324, 542
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 3 cut(s) 93, 179, 522
Bpu1102I GCTNAGC 1 cut(s) 689
BpuEI CTTGAG 3 cut(s) 113, 282, 704
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 306, 516, 612
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 413, 575
Bse1I ACTGG 7 cut(s) 205, 334, 367, 376, 457, 505, 642
BseAI TCCGGA 1 cut(s) 704
BseBI CCWGG 3 cut(s) 94, 324, 542
BseDI CCNNGG 3 cut(s) 306, 516, 612
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 3 cut(s) 329, 413, 575
BseMII CTCAG 1 cut(s) 703
BseNI ACTGG 7 cut(s) 205, 334, 367, 376, 457, 505, 642
BseRI GAGGAG 2 cut(s) 543, 546
BseSI GKGCMC 3 cut(s) 164, 306, 576
BseXI GCAGC 3 cut(s) 62, 280, 697
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 3 cut(s) 177, 576, 690
BsiHKCI CYCGRG 2 cut(s) 261, 649
BsiSI CCGG 2 cut(s) 54, 705
BslI CCNNNNNNNGG 3 cut(s) 329, 413, 575
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 2 cut(s) 261, 649
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 576, 690
Bsp13I TCCGGA 1 cut(s) 704
Bsp143I GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
Bsp1720I GCTNAGC 1 cut(s) 689
Bsp19I CCATGG 2 cut(s) 306, 516
BspACI CCGC 1 cut(s) 654
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 1 cut(s) 702
BspEI TCCGGA 1 cut(s) 704
BspLI GGNNCC 8 cut(s) 245, 337, 358, 385, 418, 439, 466, 487
BspPI GGATC 9 cut(s) 141, 330, 343, 378, 391, 411, 424, 459, 472
BsrI ACTGG 7 cut(s) 205, 334, 367, 376, 457, 505, 642
BssECI CCNNGG 3 cut(s) 306, 516, 612
BssMI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 2 cut(s) 306, 516
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 542
Bst4CI ACNGT 1 cut(s) 665
Bst6I CTCTTC 2 cut(s) 272, 561
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 689, 723
BstDSI CCRYGG 2 cut(s) 306, 516
BstEII GGTNACC 1 cut(s) 593
BstF5I GGATG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 9 cut(s) 115, 136, 189, 338, 346, 386, 419, 467, 475
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
BstMWI GCNNNNNNNGC 2 cut(s) 630, 719
BstNI CCWGG 3 cut(s) 94, 324, 542
BstPI GGTNACC 1 cut(s) 593
BstSCI CCNGG 4 cut(s) 53, 92, 322, 540
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 576
BstV1I GCAGC 3 cut(s) 62, 280, 697
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BstYI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 2 cut(s) 306, 516
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 3 cut(s) 360, 489, 649
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 3 cut(s) 357, 404, 438
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 327, 583
CviAII CATG 2 cut(s) 307, 517
CviQI GTAC 3 cut(s) 90, 327, 583
DdeI CTNAG 2 cut(s) 689, 723
DpnI GATC 9 cut(s) 114, 135, 188, 337, 345, 385, 418, 466, 474
DpnII GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
Eam1104I CTCTTC 2 cut(s) 272, 561
EarI CTCTTC 2 cut(s) 272, 561
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 2 cut(s) 306, 516
Eco24I GRGCYC 2 cut(s) 262, 690
Eco47I GGWCC 2 cut(s) 357, 438
Eco53kI GAGCTC 1 cut(s) 688
Eco88I CYCGRG 2 cut(s) 261, 649
Eco91I GGTNACC 1 cut(s) 593
EcoICRI GAGCTC 1 cut(s) 688
EcoO65I GGTNACC 1 cut(s) 593
EcoRII CCWGG 3 cut(s) 92, 322, 540
EcoT14I CCWWGG 2 cut(s) 306, 516
EcoT38I GRGCYC 2 cut(s) 262, 690
ErhI CCWWGG 2 cut(s) 306, 516
FaeI CATG 2 cut(s) 310, 520
FaiI YATR 6 cut(s) 210, 308, 518, 591, 628, 630
FatI CATG 2 cut(s) 306, 516
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 3 cut(s) 51, 294, 711
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 2 cut(s) 262, 690
Fsp4HI GCNGC 3 cut(s) 51, 294, 711
FspBI CTAG 3 cut(s) 315, 378, 444
GlaI GCGC 1 cut(s) 625
GluI GCNGC 3 cut(s) 51, 294, 711
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 93, 179, 522
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 54, 705
HhaI GCGC 1 cut(s) 626
Hin1II CATG 2 cut(s) 310, 520
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 2 cut(s) 54, 705
Hpy166II GTNNAC 3 cut(s) 360, 441, 574
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 683, 705
Hpy8I GTNNAC 3 cut(s) 360, 441, 574
HpyAV CCTTC 2 cut(s) 611, 711
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 3 cut(s) 252, 585, 675
HpyCH4V TGCA 2 cut(s) 285, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 630, 719
HpyF3I CTNAG 2 cut(s) 689, 723
HpySE526I ACGT 3 cut(s) 252, 585, 675
Hsp92II CATG 2 cut(s) 310, 520
HspAI GCGC 1 cut(s) 624
Kpn2I TCCGGA 1 cut(s) 704
Kzo9I GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
LmnI GCTCC 2 cut(s) 4, 707
Lsp1109I GCAGC 3 cut(s) 62, 280, 697
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 378, 444
MaeII ACGT 3 cut(s) 252, 585, 675
MaeIII GTNAC 2 cut(s) 593, 656
MalI GATC 9 cut(s) 114, 135, 188, 337, 345, 385, 418, 466, 474
MboI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
MboII GAAGA 4 cut(s) 289, 504, 548, 613
MflI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 576, 690
MluCI AATT 4 cut(s) 349, 397, 430, 478
MroI TCCGGA 1 cut(s) 704
MroXI GAANNNNTTC 2 cut(s) 316, 555
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 2 cut(s) 54, 705
MspR9I CCNGG 4 cut(s) 55, 94, 324, 542
MvaI CCWGG 3 cut(s) 94, 324, 542
MwoI GCNNNNNNNGC 2 cut(s) 630, 719
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 2 cut(s) 306, 516
NdeI CATATG 1 cut(s) 628
NdeII GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
NlaIII CATG 2 cut(s) 310, 520
NlaIV GGNNCC 8 cut(s) 245, 337, 358, 385, 418, 439, 466, 487
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PdmI GAANNNNTTC 2 cut(s) 316, 555
PfeI GAWTC 2 cut(s) 100, 123
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 3 cut(s) 52, 295, 712
Psp124BI GAGCTC 1 cut(s) 690
Psp6I CCWGG 3 cut(s) 92, 322, 540
PspEI GGTNACC 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 540
PspN4I GGNNCC 8 cut(s) 245, 337, 358, 385, 418, 439, 466, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 3 cut(s) 91, 328, 584
RsaNI GTAC 3 cut(s) 90, 327, 583
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 711
Sau3AI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 472
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 4 cut(s) 55, 94, 324, 542
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 576, 690
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 683
SmoI CTYRAG 4 cut(s) 128, 261, 297, 683
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 4 cut(s) 349, 397, 430, 478
SsiI CCGC 1 cut(s) 654
SspMI CTAG 3 cut(s) 315, 378, 444
SstI GAGCTC 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 53, 92, 322, 540
StyI CCWWGG 2 cut(s) 306, 516
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 3 cut(s) 255, 588, 678
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 4 cut(s) 349, 397, 430, 478
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 367, 496, 649
TseI GCWGC 3 cut(s) 50, 293, 710
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 3 cut(s) 367, 496, 649
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 2 cut(s) 357, 438
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 555
XspI CTAG 3 cut(s) 315, 378, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.