Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

60698965 .. 60701760

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTGGACAAAGTCTCGGAGTTTAGTCAAGATCAAGAAGAAAGGTTTTTGTACTATGTATCTGTTGCAGAGGAGTTGGCGCAAGAGTTGAGTTCTTCAAATGGGAAATTGAAATCACTTATCGATGACTTAAGAAATGAAGTGGATTCTATCAGGACTTTCAGGAATGAACATTCTATGGAATACCAGAAGCTTCTGATGGAAGAGGAGCAGATGGCAGAAGAATTGAAGCTGTGTCTGGAAATTGGAAAGGACAGGTTCCAATCACAAGTTTATGATCCAACTTTTGTTGGGTCAATCAAAGAAGTGCAATGTACCGACTTTCAGAGGTCCTCATTTGATGAAAAATGCATAGAGTCCATTAAGCTTCTGATGGATGAGAAGCAGAAGGCAGAGGAGTCTTTGAAAATTGAAAAGGAGATGACGCGATCCCAGGCTAATGAACTGGCTTCCCTTAGATCTGCCTTAAATGAAAAGTGCACCGAGTGGCAGGAGCTTCTAAGGGAAGAGAAGGAGAAGGCAGAGAAGTTAATGCTACTTTTGGAAATTGAAAAGGAGAGAACACAGGCTGATGAACTGGCTTCTATTAGATCCATCTTTGATGAAAAATGCGTCGAGTACCAGAAGCTTCTAATGGATGAAAGGCAGAAGGTAGAGGATTCAATGCGACTATTGAAAATTCAAAAGGGGTTAACGCAATCACAAGCTAATCAACTGGTTTTCAGATCTGCCACAGATGAATTTTTGAGGAAAGAAAACCAGGCGCCTAAAAAACTTTTGGAAGTTTTAAAGGCAGAATTGAAGGATGTGAAGAACAGAGAACTGCGTACTTGTGGTCAAGTCTCAGGAGCAACAAACAAACGCAAAAGAGAGAAGAACGAGAAAGAGGAGGAAGCTAACAATGAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

35.59

Weight (kDa)

4.98

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	763
AccII	CGCG	1 cut(s)	427
AclWI	GGATC	3 cut(s)	272, 423, 585
AcsI	RAATTY	2 cut(s)	678, 740
AcyI	GRCGYC	1 cut(s)	764
AdeI	CACNNNGTG	1 cut(s)	486
AfaI	GTAC	4 cut(s)	53, 316, 620, 829
AflII	CTTAAG	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	432, 759
AluBI	AGCT	7 cut(s)	193, 232, 367, 496, 628, 707, 896
AluI	AGCT	7 cut(s)	193, 232, 367, 496, 628, 707, 896
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	19, 847
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	3 cut(s)	272, 423, 585
ApaLI	GTGCAC	1 cut(s)	478
ApoI	RAATTY	2 cut(s)	678, 740
AspLEI	GCGC	2 cut(s)	82, 766
AspS9I	GGNCC	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	482
BccI	CCATC	4 cut(s)	193, 208, 367, 602
BciT130I	CCWGG	2 cut(s)	434, 761
BcoDI	GTCTC	2 cut(s)	19, 847
BfoI	RGCGCY	1 cut(s)	767
BfrI	CTTAAG	1 cut(s)	130
BglII	AGATCT	2 cut(s)	458, 725
Bme1390I	CCNGG	2 cut(s)	434, 761
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	260, 765
BmrFI	CCNGG	2 cut(s)	434, 761
Bsa29I	ATCGAT	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	432
Bse1I	ACTGG	3 cut(s)	450, 582, 720
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	434, 761
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	3 cut(s)	382, 643, 811
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	3 cut(s)	450, 582, 720
BseRI	GAGGAG	4 cut(s)	86, 221, 410, 902
BseSI	GKGCMC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	763
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	19, 847
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
BspCNI	CTCAG	1 cut(s)	857
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	260, 765
BspPI	GGATC	3 cut(s)	272, 423, 585
BspT107I	GGYRCC	1 cut(s)	763
BspTI	CTTAAG	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	450, 582, 720
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
BssNI	GRCGYC	1 cut(s)	764
Bst2UI	CCWGG	2 cut(s)	434, 761
Bst4CI	ACNGT	1 cut(s)	909
Bst6I	CTCTTC	2 cut(s)	198, 501
BstACI	GRCGYC	1 cut(s)	764
BstAFI	CTTAAG	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	455, 500, 844
BstF5I	GGATG	3 cut(s)	382, 643, 811
BstFNI	CGCG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	82, 766
BstKTI	GATC	6 cut(s)	34, 280, 431, 461, 593, 728
BstMAI	GTCTC	2 cut(s)	19, 847
BstMBI	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
BstNI	CCWGG	2 cut(s)	434, 761
BstSCI	CCNGG	2 cut(s)	432, 759
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	427
BstX2I	RGATCY	3 cut(s)	458, 590, 725
BstYI	RGATCY	3 cut(s)	458, 590, 725
Bsu15I	ATCGAT	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	382, 643, 811
CfoI	GCGC	2 cut(s)	82, 766
Cfr13I	GGNCC	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	2 cut(s)	433, 601
Csp6I	GTAC	4 cut(s)	52, 315, 619, 828
CviQI	GTAC	4 cut(s)	52, 315, 619, 828
DdeI	CTNAG	3 cut(s)	455, 500, 844
DinI	GGCGCC	1 cut(s)	765
DpnI	GATC	6 cut(s)	33, 279, 430, 460, 592, 727
DpnII	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
DraI	TTTAAA	1 cut(s)	789
DraIII	CACNNNGTG	1 cut(s)	486
Eam1104I	CTCTTC	2 cut(s)	198, 501
EarI	CTCTTC	2 cut(s)	198, 501
Eco47I	GGWCC	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	432, 759
EcoT22I	ATGCAT	1 cut(s)	353
EgeI	GGCGCC	1 cut(s)	765
EheI	GGCGCC	1 cut(s)	765
FaiI	YATR	4 cut(s)	57, 179, 276, 353
FokI	GGATG	3 cut(s)	389, 650, 818
GlaI	GCGC	2 cut(s)	81, 765
HaeII	RGCGCY	1 cut(s)	767
HgaI	GACGC	2 cut(s)	433, 601
HhaI	GCGC	2 cut(s)	82, 766
Hin1I	GRCGYC	1 cut(s)	764
Hin6I	GCGC	2 cut(s)	80, 764
HinP1I	GCGC	2 cut(s)	80, 764
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HindIII	AAGCTT	3 cut(s)	191, 365, 626
HinfI	GANTC	4 cut(s)	146, 356, 398, 659
HpaI	GTTAAC	1 cut(s)	693
Hpy166II	GTNNAC	3 cut(s)	7, 480, 693
Hpy188I	TCNGA	5 cut(s)	19, 198, 327, 372, 725
Hpy188III	TCNNGA	6 cut(s)	29, 35, 154, 163, 239, 846
Hpy8I	GTNNAC	3 cut(s)	7, 480, 693
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	5 cut(s)	382, 505, 511, 643, 796
HpyCH4III	ACNGT	1 cut(s)	909
HpyCH4V	TGCA	4 cut(s)	68, 310, 351, 480
HpyF3I	CTNAG	3 cut(s)	455, 500, 844
Hsp92I	GRCGYC	1 cut(s)	764
HspAI	GCGC	2 cut(s)	80, 764
KasI	GGCGCC	1 cut(s)	763
KspAI	GTTAAC	1 cut(s)	693
Kzo9I	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
LmnI	GCTCC	3 cut(s)	208, 493, 848
MalI	GATC	6 cut(s)	33, 279, 430, 460, 592, 727
MboI	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
MboII	GAAGA	7 cut(s)	50, 87, 215, 233, 518, 823, 886
MflI	RGATCY	3 cut(s)	458, 590, 725
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	8 cut(s)	107, 224, 243, 408, 546, 678, 740, 797
Mly113I	GGCGCC	1 cut(s)	764
MlyI	GAGTC	2 cut(s)	365, 407
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	9 cut(s)	64, 199, 321, 343, 388, 649, 741, 880, 883
Mph1103I	ATGCAT	1 cut(s)	353
MseI	TTAA	6 cut(s)	131, 363, 467, 530, 692, 788
MspCI	CTTAAG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	434, 761
MvaI	CCWGG	2 cut(s)	434, 761
MvnI	CGCG	1 cut(s)	427
NarI	GGCGCC	1 cut(s)	764
NdeII	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
NlaIV	GGNNCC	2 cut(s)	260, 765
NsiI	ATGCAT	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	146, 659
PflFI	GACNNNGTC	1 cut(s)	11
PleI	GAGTC	2 cut(s)	364, 406
PluTI	GGCGCC	1 cut(s)	767
PpsI	GAGTC	2 cut(s)	364, 406
PpuMI	RGGWCCY	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	432, 759
PspGI	CCWGG	2 cut(s)	432, 759
PspN4I	GGNNCC	2 cut(s)	260, 765
PspPI	GGNCC	1 cut(s)	330
PspPPI	RGGWCCY	1 cut(s)	330
PsuI	RGATCY	3 cut(s)	458, 590, 725
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	4 cut(s)	53, 316, 620, 829
RsaNI	GTAC	4 cut(s)	52, 315, 619, 828
SaqAI	TTAA	6 cut(s)	131, 363, 467, 530, 692, 788
Sau3AI	GATC	6 cut(s)	31, 277, 428, 458, 590, 725
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	365, 407
ScrFI	CCNGG	2 cut(s)	434, 761
SduI	GDGCHC	1 cut(s)	482
SfoI	GGCGCC	1 cut(s)	765
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	8 cut(s)	107, 224, 243, 408, 546, 678, 740, 797
SspDI	GGCGCC	1 cut(s)	763
StyD4I	CCNGG	2 cut(s)	432, 759
TaaI	ACNGT	1 cut(s)	909
TaqI	TCGA	2 cut(s)	123, 615
TasI	AATT	8 cut(s)	107, 224, 243, 408, 546, 678, 740, 797
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	146, 659
Tru1I	TTAA	6 cut(s)	131, 363, 467, 530, 692, 788
Tru9I	TTAA	6 cut(s)	131, 363, 467, 530, 692, 788
TspDTI	ATGAA	9 cut(s)	153, 183, 357, 456, 486, 588, 618, 654, 753
Tth111I	GACNNNGTC	1 cut(s)	11
Vha464I	CTTAAG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	2 cut(s)	678, 740
Zsp2I	ATGCAT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.