Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

19104989 .. 19107638

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24860.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCCGATTTCATCCCAATGGTGGACAGAGTCTCGGAGTTCGCTAAGGGTCAAGAAGAAAAGCTTGTGAAATTTGTATCTGTTGCAGAGAAGTTGGCGCAAGAGTTGAGTGCTCCAAATGAGAACTTGGAATCACTTATTGCCGGCTTAAAAAAGGAAGTGGAGTCTGTAAGGGCTTTCAAGAATGAACACCAGAAGCTGCCGGTGGAAATGGAAGATCTGAAACAGGCTTCTGGATCCCTGCCTTCTAGCTCCACCATTGCTGAAAAATCTGTTGAGCGCCAGAAGCGTCCGAGGAATGAAAGTTCTGCTGAAGATGAGATGATGAGGCCGATGGGTGTACAACTGGTACAAGAGCTGGATTCTTTTGAGGCAGTAGTGAAGAATTTGAAGAACAGACAAGCGAGATTTCTTGATGAATTCTCAGAAGCATCAAAACAAAGGCTAAAGAGAGGAGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

5.66

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	231, 244
AcsI	RAATTY	3 cut(s)	71, 385, 419
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	2 cut(s)	342, 351
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	181, 391
AloI	GAACNNNNNNTCC	2 cut(s)	289, 321
AluBI	AGCT	5 cut(s)	64, 199, 252, 358, 462
AluI	AGCT	5 cut(s)	64, 199, 252, 358, 462
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	231, 244
AlwNI	CAGNNNCTG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	3 cut(s)	71, 385, 419
AspLEI	GCGC	2 cut(s)	100, 282
BamHI	GGATCC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	283
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	2 cut(s)	143, 202
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	144, 203
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	217, 236
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	231, 244
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	2 cut(s)	143, 202
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	2 cut(s)	143, 202
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	2 cut(s)	217, 236
BstAUI	TGTACA	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	45, 424
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	2 cut(s)	100, 282
BstKTI	GATC	2 cut(s)	220, 239
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	217, 236
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	217, 236
BstYI	RGATCY	2 cut(s)	217, 236
BsuRI	GGCC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	199
CfoI	GCGC	2 cut(s)	100, 282
Cfr10I	RCCGGY	2 cut(s)	143, 202
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	341, 350
CviQI	GTAC	2 cut(s)	341, 350
DdeI	CTNAG	2 cut(s)	45, 424
DpnI	GATC	2 cut(s)	219, 238
DpnII	GATC	2 cut(s)	217, 236
Eco57I	CTGAAG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	419
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
Fnu4HI	GCNGC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	2 cut(s)	99, 281
GluI	GCNGC	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	144, 203
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	100, 282
Hin6I	GCGC	2 cut(s)	98, 280
HinP1I	GCGC	2 cut(s)	98, 280
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	4 cut(s)	30, 131, 164, 362
HpaII	CCGG	2 cut(s)	144, 203
Hpy166II	GTNNAC	2 cut(s)	25, 341
Hpy188I	TCNGA	5 cut(s)	7, 37, 222, 294, 427
Hpy188III	TCNNGA	4 cut(s)	53, 181, 234, 413
Hpy8I	GTNNAC	2 cut(s)	25, 341
HpyAV	CCTTC	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	2 cut(s)	45, 424
HspAI	GCGC	2 cut(s)	98, 280
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	217, 236
LmnI	GCTCC	2 cut(s)	118, 257
LpnPI	CCDG	9 cut(s)	157, 206, 212, 216, 219, 254, 296, 332, 344
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	1 cut(s)	249
MalI	GATC	2 cut(s)	219, 238
MboI	GATC	2 cut(s)	217, 236
MboII	GAAGA	5 cut(s)	68, 227, 326, 394, 403
MflI	RGATCY	2 cut(s)	217, 236
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	3 cut(s)	71, 385, 419
MlyI	GAGTC	2 cut(s)	39, 173
MnlI	CCTC	5 cut(s)	288, 321, 364, 446, 449
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	2 cut(s)	144, 203
MwoI	GCNNNNNNNGC	1 cut(s)	286
NaeI	GCCGGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	217, 236
NgoMIV	GCCGGC	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	131, 362
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	201
PleI	GAGTC	2 cut(s)	38, 172
PpsI	GAGTC	2 cut(s)	38, 172
PspN4I	GGNNCC	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	217, 236
PsyI	GACNNNGTC	1 cut(s)	29
RsaI	GTAC	2 cut(s)	342, 351
RsaNI	GTAC	2 cut(s)	341, 350
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	2 cut(s)	217, 236
SchI	GAGTC	2 cut(s)	39, 173
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	5 cut(s)	66, 201, 254, 360, 464
SfaNI	GCATC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	3 cut(s)	71, 385, 419
SspMI	CTAG	1 cut(s)	249
TasI	AATT	3 cut(s)	71, 385, 419
TatI	WGTACW	1 cut(s)	340
TfiI	GAWTC	2 cut(s)	131, 362
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	201, 315, 432
Tth111I	GACNNNGTC	1 cut(s)	29
XapI	RAATTY	3 cut(s)	71, 385, 419
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.