Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7970762.1

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 504

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7970762.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

tgcaccgagtggcaggagcttctaagggaagagaaggagaaggcagagaagttaatgctacttttggaaattgaaaaggagagaacacaggctgatgaactggcttctattagatccatctttgatgaaaagtgcgtcgagtaccagaagcttctaatggatgaaaggcagaaggtagaggattcaatgcgactattgaaaattcaaaaggggttaacgcaatcacaagctaatcaactgatccgccacagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

10.13

Weight (kDa)

5.51

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	108, 235
AcsI	RAATTY	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	74, 186, 199, 206
AluBI	AGCT	3 cut(s)	19, 151, 230
AluI	AGCT	3 cut(s)	19, 151, 230
AlwI	GGATC	2 cut(s)	108, 235
ApoI	RAATTY	1 cut(s)	201
BccI	CCATC	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	113, 240
BspACI	CCGC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	108, 235
BsrI	ACTGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	113, 240
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	116, 243
BstMBI	GATC	2 cut(s)	113, 240
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	166
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	5 cut(s)	19, 92, 104, 151, 230
CviKI_1	RGCY	5 cut(s)	19, 92, 104, 151, 230
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	115, 242
DpnII	GATC	2 cut(s)	113, 240
DraIII	CACNNNGTG	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	233
FokI	GGATG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	182
HpaI	GTTAAC	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	28, 34, 166
HpyCH4V	TGCA	1 cut(s)	3
HpyF3I	CTNAG	1 cut(s)	23
KspAI	GTTAAC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	113, 240
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	74, 86, 158
MalI	GATC	2 cut(s)	115, 242
MboI	GATC	2 cut(s)	113, 240
MboII	GAAGA	1 cut(s)	41
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	2 cut(s)	69, 201
MnlI	CCTC	1 cut(s)	172
MseI	TTAA	2 cut(s)	53, 215
NdeII	GATC	2 cut(s)	113, 240
PfeI	GAWTC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	53, 215
Sau3AI	GATC	2 cut(s)	113, 240
SetI	ASST	4 cut(s)	21, 153, 177, 232
SgeI	CNNG	7 cut(s)	19, 26, 101, 113, 151, 157, 239
Sse9I	AATT	2 cut(s)	69, 201
SsiI	CCGC	1 cut(s)	244
TaqI	TCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	69, 201
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	53, 215
Tru9I	TTAA	2 cut(s)	53, 215
TspDTI	ATGAA	3 cut(s)	111, 141, 177
XapI	RAATTY	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.