Rorug01G0359000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001786
Physical Location & Seq
Forward (+)
47500146 .. 47501415
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0359000.1

Sequence Viewer

Length: 1167 bp
ATGAGAGCACCGATTAGTAATTATCGAAGAAAGAAGAACGTCGTCACTACGGCAGCTCATAAGGACTGGTCAAACCTTCATTATCATCAAGATCTTATTAACTGTTTTGCAGAGCAAATAGTTTCCATGAAGGATTTCTATGCTTTTGGAGGAGTTTGCAGATCATGGAGATCAGCAGCGATCAAGGAAAACTCTAATACAGGTCTGAGATTACAGCATAAAGTTCCGGTCCTCCTTCTTCCAAAGGAGATCAATGCTCCCATCTGCAATTTTTACAGCTTGACAAAAGGTCAGATTTACCAACTTGATTTACCAGAAACTATGGGCAAGTTTTGCTATTCTTCTTTAGGATGGTTATTGACTGTATCCGAAGATTTTTCCAAACTTCATCTTTTTAATCCATTAACCCATGTCCAAATTGAGCTGCCTCATCTGCGGCCAGAAATCATGACACTTAGAAATATAAACAAGTTTGTATTATCATCGAGTCCTTCTTGGACATCGAATTATGGGGTCATGATTGTATCATATCATGAATTGGCCTTTTACCAGCCGGGGTATAACAATGACAAATGGACTTCTGTATCTTTAGGGCTATTACTAACTTTAACGGATGCAATTTATTATAAGGGCCAATTTTATGTCGTGGACTATCTTGGTAAGGTTTTTGTCTGTGAGATAGAAGATCCTAAAAATGCACAGATTAGGGCTGTTGCTGCAGGGATTCCAAAGGAACTGCTGTTCGGTCCTGAGATTCATTTTAAAGCACCATGTTTAGTGGAATCTGCAACAGGGACCTTGTTATTGGTTATCTCTTTATTTGAGCAAGGCAAAACTGAATCAACTGTTGGTTGTAGGGTATTCAAGGTGCCATTTGATGATGGCAATTCATGGGCAAAATCAGAAGTAAAGAATTTGGGGAATAGAACCTTATTTTTGGGTGCAAACAATTCTTCATTCTCGATTGAGGCTTTAGATGATTCTATATGCAAAGCCAATTGTATTTATTTCTTAAATCGGAGTCATGTCTCCGATGAAGGGCACATCGACATTGGCATTTACTATATGAAGGATGGAAAAATAGAGCGACACTTTGAAGCATTTCCAGATTTTCAGTACAAAGGCAGATCAATAACATCGCATTCATGGCTTCAACCGAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.09

Weight (kDa)

7.99

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 91 - 354 1.8e-48 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 868
AciI CCGC 1 cut(s) 436
AclWI GGATC 1 cut(s) 680
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 913
AfaI GTAC 1 cut(s) 1118
AfiI CCNNNNNNNGG 1 cut(s) 1038
AgsI TTSAA 3 cut(s) 865, 1097, 1154
AhdI GACNNNNNGTC 1 cut(s) 288
AjuI GAANNNNNNNTTGG 2 cut(s) 831, 863
AloI GAACNNNNNNTCC 2 cut(s) 725, 757
AluBI AGCT 3 cut(s) 56, 279, 424
AluI AGCT 3 cut(s) 56, 279, 424
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 1033
AlwI GGATC 1 cut(s) 680
AoxI GGCC 3 cut(s) 437, 540, 631
ApeKI GCWGC 4 cut(s) 53, 176, 424, 716
ApoI RAATTY 1 cut(s) 913
Asp700I GAANNNNTTC 2 cut(s) 134, 1101
AspS9I GGNCC 4 cut(s) 229, 631, 746, 795
AsuC2I CCSGG 1 cut(s) 555
AvaII GGWCC 3 cut(s) 229, 746, 795
BaeGI GKGCMC 1 cut(s) 1044
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BanI GGYRCC 1 cut(s) 868
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 4 cut(s) 65, 188, 411, 703
BccI CCATC 4 cut(s) 269, 345, 875, 1067
BceAI ACGGC 1 cut(s) 66
BciVI GTATCC 1 cut(s) 376
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 1033
BfmI CTRYAG 1 cut(s) 717
BfuI GTATCC 1 cut(s) 376
BglII AGATCT 1 cut(s) 91
BisI GCNGC 5 cut(s) 54, 177, 425, 437, 717
BlsI GCNGC 5 cut(s) 55, 178, 426, 438, 718
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 3 cut(s) 229, 746, 795
BmeRI GACNNNNNGTC 1 cut(s) 288
BmgT120I GGNCC 4 cut(s) 229, 631, 746, 795
BmiI GGNNCC 2 cut(s) 796, 870
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 604
BpuMI CCSGG 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 554
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 1038
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 3 cut(s) 356, 619, 1078
BseLI CCNNNNNNNGG 1 cut(s) 1038
BseMII CTCAG 2 cut(s) 197, 741
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 1044
BseXI GCAGC 4 cut(s) 65, 188, 411, 703
BshFI GGCC 3 cut(s) 439, 542, 633
BshNI GGYRCC 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 227, 554
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 1 cut(s) 1038
BsmAI GTCTC 1 cut(s) 1033
BsmFI GGGAC 1 cut(s) 808
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 3 cut(s) 439, 542, 633
Bsp1286I GDGCHC 2 cut(s) 10, 1044
Bsp143I GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
BspACI CCGC 1 cut(s) 436
BspANI GGCC 3 cut(s) 439, 542, 633
BspCNI CTCAG 2 cut(s) 198, 742
BspHI TCATGA 3 cut(s) 447, 516, 532
BspLI GGNNCC 2 cut(s) 796, 870
BspMAI CTGCAG 1 cut(s) 721
BspPI GGATC 1 cut(s) 680
BspT107I GGYRCC 1 cut(s) 868
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
Bst4CI ACNGT 3 cut(s) 104, 364, 847
BstAPI GCANNNNNTGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 206, 455, 750
BstF5I GGATG 3 cut(s) 356, 619, 1078
BstKTI GATC 7 cut(s) 94, 164, 173, 183, 252, 688, 1130
BstMAI GTCTC 1 cut(s) 1033
BstMBI GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
BstMWI GCNNNNNNNGC 4 cut(s) 333, 433, 716, 1147
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 1044
BstV1I GCAGC 4 cut(s) 65, 188, 411, 703
BstX2I RGATCY 2 cut(s) 91, 685
BstYI RGATCY 2 cut(s) 91, 685
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 3 cut(s) 439, 542, 633
BtgZI GCGATG 1 cut(s) 1122
BtsCI GGATG 3 cut(s) 356, 619, 1078
CciI TCATGA 3 cut(s) 447, 516, 532
Cfr13I GGNCC 4 cut(s) 229, 631, 746, 795
Csp6I GTAC 1 cut(s) 1117
CviQI GTAC 1 cut(s) 1117
DdeI CTNAG 3 cut(s) 206, 455, 750
DpnI GATC 7 cut(s) 93, 163, 172, 182, 251, 687, 1129
DpnII GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
DraI TTTAAA 1 cut(s) 763
DriI GACNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 437
Eam1105I GACNNNNNGTC 1 cut(s) 288
Eco47I GGWCC 3 cut(s) 229, 746, 795
EcoO109I RGGNCCY 1 cut(s) 795
FaqI GGGAC 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 54, 177, 425, 437, 717
FokI GGATG 3 cut(s) 363, 626, 1085
Fsp4HI GCNGC 5 cut(s) 54, 177, 425, 437, 717
GluI GCNGC 5 cut(s) 54, 177, 425, 437, 717
HaeIII GGCC 3 cut(s) 439, 542, 633
HapII CCGG 2 cut(s) 227, 554
HinfI GANTC 7 cut(s) 487, 724, 754, 782, 839, 980, 1021
HpaII CCGG 2 cut(s) 227, 554
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 6 cut(s) 207, 294, 370, 904, 1020, 1033
Hpy188III TCNNGA 7 cut(s) 89, 448, 517, 533, 749, 961, 1106
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 6 cut(s) 86, 124, 245, 501, 1031, 1063
HpyCH4III ACNGT 3 cut(s) 104, 364, 847
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 9 cut(s) 110, 159, 267, 617, 698, 719, 788, 944, 990
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 433, 716, 1147
HpyF3I CTNAG 3 cut(s) 206, 455, 750
HpySE526I ACGT 1 cut(s) 39
Kzo9I GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 4 cut(s) 65, 188, 411, 703
LweI GCATC 1 cut(s) 604
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 43
MalI GATC 7 cut(s) 93, 163, 172, 182, 251, 687, 1129
MboI GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
MboII GAAGA 7 cut(s) 39, 46, 230, 333, 383, 695, 945
MfeI CAATTG 1 cut(s) 997
MflI RGATCY 2 cut(s) 91, 685
MhlI GDGCHC 2 cut(s) 10, 1044
MlyI GAGTC 2 cut(s) 496, 1030
MnlI CCTC 4 cut(s) 143, 242, 438, 961
MroXI GAANNNNTTC 2 cut(s) 134, 1101
MseI TTAA 6 cut(s) 99, 396, 404, 608, 762, 1013
MspI CCGG 2 cut(s) 227, 554
MspR9I CCNGG 1 cut(s) 555
MunI CAATTG 1 cut(s) 997
Mva1269I GAATGC 1 cut(s) 1141
MwoI GCNNNNNNNGC 4 cut(s) 333, 433, 716, 1147
NciI CCSGG 1 cut(s) 555
NdeII GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
NlaIV GGNNCC 2 cut(s) 796, 870
NmuCI GTSAC 1 cut(s) 43
PagI TCATGA 3 cut(s) 447, 516, 532
PctI GAATGC 1 cut(s) 1141
PdmI GAANNNNTTC 2 cut(s) 134, 1101
PfeI GAWTC 5 cut(s) 724, 754, 782, 839, 980
PkrI GCNGC 5 cut(s) 55, 178, 426, 438, 718
PleI GAGTC 2 cut(s) 495, 1029
PpsI GAGTC 2 cut(s) 495, 1029
PpuMI RGGWCCY 1 cut(s) 795
PsiI TTATAA 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 795
PspN4I GGNNCC 2 cut(s) 796, 870
PspPI GGNCC 4 cut(s) 229, 631, 746, 795
PspPPI RGGWCCY 1 cut(s) 795
PstI CTGCAG 1 cut(s) 721
PsuI RGATCY 2 cut(s) 91, 685
RsaI GTAC 1 cut(s) 1118
RsaNI GTAC 1 cut(s) 1117
SaqAI TTAA 6 cut(s) 99, 396, 404, 608, 762, 1013
SatI GCNGC 5 cut(s) 54, 177, 425, 437, 717
Sau3AI GATC 7 cut(s) 91, 161, 170, 180, 249, 685, 1127
Sau96I GGNCC 4 cut(s) 229, 631, 746, 795
SchI GAGTC 2 cut(s) 496, 1030
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 2 cut(s) 10, 1044
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 717
SinI GGWCC 3 cut(s) 229, 746, 795
SsiI CCGC 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 104, 364, 847
TaiI ACGT 1 cut(s) 42
TaqI TCGA 5 cut(s) 25, 485, 503, 962, 1047
TaqII GACCGA 1 cut(s) 734
TatI WGTACW 1 cut(s) 1116
TauI GCSGC 1 cut(s) 439
TfiI GAWTC 5 cut(s) 724, 754, 782, 839, 980
Tru1I TTAA 6 cut(s) 99, 396, 404, 608, 762, 1013
Tru9I TTAA 6 cut(s) 99, 396, 404, 608, 762, 1013
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 4 cut(s) 53, 176, 424, 716
Tsp45I GTSAC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 626
VpaK11BI GGWCC 3 cut(s) 229, 746, 795
XapI RAATTY 1 cut(s) 913
XmnI GAANNNNTTC 2 cut(s) 134, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.