Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

10052843 .. 10086636

Gene Structure 33794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG066100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCGATTAATACAGGGTTTGGAAAAAGGCGTGCTGCTGTCCCAGACGAGCTTGTCGTTGACAGGGAGAGATATTTTGGGGACAATGTATTTGCCGAGGAGGTCATGCTGGCGCGGAGCCGAAGACAAGAGGTGGCGTTGCCAATATGGATGCCGGGAACATTCTGGGCCTAACTATCCAAACCCTAGAGCTCCCAATTGTTCCACCACGGAGAGCGTAGCTAGGCCTGGAGCTACTTCTGTCACCAATGAGTGCGTGGCTTACAAGCTTAAGGGCTGCTTTGATTTGGCCAAGGATGAGATCACCAAGGCTGTTAGGGCTGAAGAATGGGGCTCAAGATCGGCGTCGGCAACACAATCGAGATTAGTTTTTGGAACTGCTCGTGTTGCACTTGCAGGACTACTAGGAACTGTAAGAGCACACGGTCGACCATTGGCATACATTGTGAACCAAAAGATAGTTGTGGGAGCTGGAAGAAAGCATCTACATCCCTTCACCGAGAAGTCCATTAAGCTTTTGATGGATGAGAAGCAGAAGGTAGAGAAGTCTTTGAAAATTGAAAAGGAGATGACGCGATCCCAGGCTAATGAATTGGCTTCCCTTAGGCATGCAACTCGTATAAGTTACATTCAGAAGGTACGAATTCCATCACAACCTCAGTATGATAAACATCAACTCAAACAAAAGCATTCTCCAAATTTAAAAGGGTTTCGGGGTGGAACTTGGGTTGGGTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

246

Amino Acids

27.53

Weight (kDa)

10.05

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	427
AccII	CGCG	2 cut(s)	114, 574
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	570
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	642, 697
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	639
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	553, 560
AjnI	CCWGG	2 cut(s)	226, 579
AluBI	AGCT	7 cut(s)	51, 191, 221, 233, 268, 470, 514
AluI	AGCT	7 cut(s)	51, 191, 221, 233, 268, 470, 514
Alw21I	GWGCWC	2 cut(s)	193, 421
AlwI	GGATC	1 cut(s)	570
AoxI	GGCC	3 cut(s)	167, 224, 288
ApeKI	GCWGC	2 cut(s)	34, 276
ApoI	RAATTY	2 cut(s)	642, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AseI	ATTAAT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	3 cut(s)	235, 295, 487
AxyI	CCTNAGG	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	193, 335
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	193, 421
BbvI	GCAGC	2 cut(s)	21, 263
BccI	CCATC	2 cut(s)	514, 655
BcgI	CGANNNNNNTGC	4 cut(s)	339, 373, 596, 630
BciT130I	CCWGG	2 cut(s)	228, 581
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	3 cut(s)	186, 222, 404
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	2 cut(s)	35, 277
BlsI	GCNGC	2 cut(s)	36, 278
Bme1390I	CCNGG	3 cut(s)	155, 228, 581
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	3 cut(s)	155, 228, 581
BmsI	GCATC	2 cut(s)	140, 490
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	5 cut(s)	95, 207, 291, 306, 579
Bse21I	CCTNAGG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	228, 581
BseDI	CCNNGG	5 cut(s)	95, 207, 291, 306, 579
BseGI	GGATG	4 cut(s)	155, 301, 487, 529
BseJI	GATNNNNATC	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	671
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	21, 263
Bsh1236I	CGCG	2 cut(s)	114, 574
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	3 cut(s)	169, 226, 290
BsiEI	CGRYCG	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	193, 421
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	25, 94
BsmFI	GGGAC	2 cut(s)	25, 94
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	169, 226, 290
Bsp1286I	GDGCHC	3 cut(s)	193, 335, 421
Bsp143I	GATC	3 cut(s)	300, 338, 575
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	3 cut(s)	169, 226, 290
BspCNI	CTCAG	1 cut(s)	670
BspFNI	CGCG	2 cut(s)	114, 574
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	570
BspTI	CTTAAG	1 cut(s)	269
BssECI	CCNNGG	5 cut(s)	95, 207, 291, 306, 579
BssMI	GATC	3 cut(s)	300, 338, 575
BssNI	GRCGYC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	291, 306
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	228, 581
Bst4CI	ACNGT	2 cut(s)	412, 425
BstACI	GRCGYC	1 cut(s)	344
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	32, 110, 609
BstDEI	CTNAG	2 cut(s)	602, 657
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	4 cut(s)	155, 301, 487, 529
BstFNI	CGCG	2 cut(s)	114, 574
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	303, 341, 578
BstMBI	GATC	3 cut(s)	300, 338, 575
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 386
BstNI	CCWGG	2 cut(s)	228, 581
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	153, 226, 579
BstUI	CGCG	2 cut(s)	114, 574
BstV1I	GCAGC	2 cut(s)	21, 263
BstV2I	GAAGAC	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	169, 226, 290
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	155, 301, 487, 529
Cac8I	GCNNGC	3 cut(s)	32, 110, 609
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	2 cut(s)	333, 580
Csp6I	GTAC	1 cut(s)	638
CviAII	CATG	2 cut(s)	105, 608
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	2 cut(s)	602, 657
DpnI	GATC	3 cut(s)	302, 340, 577
DpnII	GATC	3 cut(s)	300, 338, 575
DraI	TTTAAA	1 cut(s)	702
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	291, 306
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	193, 335
Eco53kI	GAGCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	226, 579
EcoT14I	CCWWGG	2 cut(s)	291, 306
EcoT38I	GRGCYC	2 cut(s)	193, 335
ErhI	CCWWGG	2 cut(s)	291, 306
FaeI	CATG	2 cut(s)	108, 611
FaiI	YATR	6 cut(s)	106, 147, 439, 609, 620, 663
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	2 cut(s)	25, 94
FatI	CATG	2 cut(s)	104, 607
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	35, 277
FokI	GGATG	4 cut(s)	162, 308, 474, 536
FriOI	GRGCYC	2 cut(s)	193, 335
Fsp4HI	GCNGC	2 cut(s)	35, 277
FspBI	CTAG	3 cut(s)	186, 222, 404
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	35, 277
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	169, 226, 290
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	2 cut(s)	333, 580
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	2 cut(s)	108, 611
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	60, 428
HindII	GTYRAC	2 cut(s)	60, 428
HindIII	AAGCTT	2 cut(s)	266, 512
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	3 cut(s)	235, 295, 487
Hpy166II	GTNNAC	3 cut(s)	60, 428, 448
Hpy188I	TCNGA	1 cut(s)	633
Hpy188III	TCNNGA	2 cut(s)	336, 360
Hpy8I	GTNNAC	3 cut(s)	60, 428, 448
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	3 cut(s)	502, 529, 628
HpyCH4III	ACNGT	2 cut(s)	412, 425
HpyCH4V	TGCA	3 cut(s)	389, 395, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 386
HpyF3I	CTNAG	2 cut(s)	602, 657
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	2 cut(s)	108, 611
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	300, 338, 575
LmnI	GCTCC	4 cut(s)	116, 196, 230, 467
Lsp1109I	GCAGC	2 cut(s)	21, 263
LweI	GCATC	2 cut(s)	140, 490
MaeI	CTAG	3 cut(s)	186, 222, 404
MaeIII	GTNAC	2 cut(s)	241, 623
MalI	GATC	3 cut(s)	302, 340, 577
MboI	GATC	3 cut(s)	300, 338, 575
MboII	GAAGA	3 cut(s)	134, 335, 486
MfeI	CAATTG	1 cut(s)	196
MhlI	GDGCHC	3 cut(s)	193, 335, 421
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	5 cut(s)	196, 555, 590, 642, 697
MluNI	TGGCCA	1 cut(s)	290
MnlI	CCTC	4 cut(s)	90, 93, 123, 666
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	8, 270, 510, 701
Msp20I	TGGCCA	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	3 cut(s)	155, 228, 581
MunI	CAATTG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	228, 581
MvnI	CGCG	2 cut(s)	114, 574
MwoI	GCNNNNNNNGC	2 cut(s)	317, 386
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	300, 338, 575
NlaIII	CATG	2 cut(s)	108, 611
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	611
PceI	AGGCCT	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	36, 278
PshBI	ATTAAT	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	226, 579
PspGI	CCWGG	2 cut(s)	226, 579
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	8, 270, 510, 701
SatI	GCNGC	2 cut(s)	35, 277
Sau3AI	GATC	3 cut(s)	300, 338, 575
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	155, 228, 581
SduI	GDGCHC	3 cut(s)	193, 335, 421
SfaNI	GCATC	2 cut(s)	140, 490
SmlI	CTYRAG	2 cut(s)	269, 334
SmoI	CTYRAG	2 cut(s)	269, 334
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	5 cut(s)	196, 555, 590, 642, 697
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	3 cut(s)	186, 222, 404
SstI	GAGCTC	1 cut(s)	193
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	3 cut(s)	153, 226, 579
StyI	CCWWGG	2 cut(s)	291, 306
TaaI	ACNGT	2 cut(s)	412, 425
TaqI	TCGA	2 cut(s)	359, 427
TasI	AATT	5 cut(s)	196, 555, 590, 642, 697
Tru1I	TTAA	4 cut(s)	8, 270, 510, 701
Tru9I	TTAA	4 cut(s)	8, 270, 510, 701
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	34, 276
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	2 cut(s)	642, 697
XceI	RCATGY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	3 cut(s)	186, 222, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.