RLG00000027014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001786
Physical Location & Seq
Reverse (-)
7675624 .. 7677876
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027014

Sequence Viewer

Length: 921 bp
ATGCCTTGTCAGGTGGACAAAGTCTCGGAGTTTAGTCAGGATCAAGAAGAAAGGTTTTTGTACTATGTATCTGTTGCAGAGGAGTTGGCGCAAGAGTTGAGTTCTTCAAATGGGAACTTGAAATCACTTATCGATGACTTAAGAAATGAAGTGGATTCTATCAGGACTTTCAGGAATGAGCATTCTATGGAATACCAGAAGCTTCTGATGGAAGAGGAGCAGATGGCAGAAGAATTGAAGCTGTGTCTGGAAATTGGAAAGGACAGGTTCCAATCACAAGCTTATGAACCAACTTTTGTTGGGTCAATCAAAGAAGTGCAATGTACCGACTTTCAGAGGTCCTCCTTTGATGAAAAATGCATAGAGTCCATTAAGCTTCTGATGGATGAGAAGCAGAAGGCAGAGGAGTCTTTGAAAATTGAAAAGGAGATGACGCGATCCCAGGCTAATGAACTGGCTTCCCTTAGATCTGCCTTAAATGAAAAGTGCATCGAGTGGCAGGAGCTTCTAAATGAAGAGAAGGAGAAGGCAGAGAAGTTAATGCTACTTTTGGAAATTGAAAAGGAGAGAACACAGGCTGATGAACTGGCTTCTATTAGATCCATCTTTGATGAAAAATGCGTCGAGTACCATAAGCTTCTAATGGATGAAAGGCAGAAGGTAGAGGATTCAATGCGACTATTGAAAATTCAAAAGGTGACAACGCAATCACAAGCTAATCAACTGGCTTTCAGATCTGCCACAGATGAATTTTTGAGGAAAGAAAACCAGGCTTCTAAAAAACTTTTGGAAGTTTTAGAGGCAGAATTGAAGGATGTGAAGAACAGAGAACTGTGTACTTGTGGTCTAGTCTCAGGAGCAACAAACAAACGCAAAAGAGAGAAGAACGAGAAAGAGGAGGAAGCTAACAATGAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

35.8

Weight (kDa)

4.84

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 436
AclWI GGATC 3 cut(s) 48, 432, 594
AcsI RAATTY 2 cut(s) 687, 749
AfaI GTAC 4 cut(s) 62, 325, 629, 838
AflII CTTAAG 1 cut(s) 139
AjnI CCWGG 2 cut(s) 441, 768
AluBI AGCT 8 cut(s) 202, 241, 281, 376, 505, 637, 716, 905
AluI AGCT 8 cut(s) 202, 241, 281, 376, 505, 637, 716, 905
Alw26I GTCTC 2 cut(s) 28, 856
AlwI GGATC 3 cut(s) 48, 432, 594
ApoI RAATTY 2 cut(s) 687, 749
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 709
AvaII GGWCC 1 cut(s) 339
BccI CCATC 4 cut(s) 202, 217, 376, 611
BciT130I CCWGG 2 cut(s) 443, 770
BcoDI GTCTC 2 cut(s) 28, 856
BfaI CTAG 1 cut(s) 848
BfrI CTTAAG 1 cut(s) 139
BglII AGATCT 2 cut(s) 467, 734
Bme1390I CCNGG 2 cut(s) 443, 770
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 443, 770
BmsI GCATC 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 441
Bse1I ACTGG 3 cut(s) 459, 591, 729
Bse3DI GCAATG 1 cut(s) 326
BseBI CCWGG 2 cut(s) 443, 770
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 3 cut(s) 391, 652, 820
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 3 cut(s) 459, 591, 729
BseRI GAGGAG 4 cut(s) 95, 230, 419, 911
Bsh1236I CGCG 1 cut(s) 436
BshVI ATCGAT 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 28, 856
BsmI GAATGC 1 cut(s) 181
Bsp143I GATC 5 cut(s) 40, 437, 467, 599, 734
BspCNI CTCAG 1 cut(s) 866
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 269
BspPI GGATC 3 cut(s) 48, 432, 594
BspTI CTTAAG 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 3 cut(s) 459, 591, 729
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 5 cut(s) 40, 437, 467, 599, 734
Bst2UI CCWGG 2 cut(s) 443, 770
Bst4CI ACNGT 2 cut(s) 834, 918
Bst6I CTCTTC 2 cut(s) 207, 510
BstAFI CTTAAG 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 464, 853
BstF5I GGATG 3 cut(s) 391, 652, 820
BstFNI CGCG 1 cut(s) 436
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 5 cut(s) 43, 440, 470, 602, 737
BstMAI GTCTC 2 cut(s) 28, 856
BstMBI GATC 5 cut(s) 40, 437, 467, 599, 734
BstNI CCWGG 2 cut(s) 443, 770
BstSCI CCNGG 2 cut(s) 441, 768
BstUI CGCG 1 cut(s) 436
BstX2I RGATCY 3 cut(s) 467, 599, 734
BstYI RGATCY 3 cut(s) 467, 599, 734
Bsu15I ATCGAT 1 cut(s) 132
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 3 cut(s) 391, 652, 820
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 339
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 2 cut(s) 442, 610
Csp6I GTAC 4 cut(s) 61, 324, 628, 837
CviQI GTAC 4 cut(s) 61, 324, 628, 837
DdeI CTNAG 2 cut(s) 464, 853
DpnI GATC 5 cut(s) 42, 439, 469, 601, 736
DpnII GATC 5 cut(s) 40, 437, 467, 599, 734
Eam1104I CTCTTC 2 cut(s) 207, 510
EarI CTCTTC 2 cut(s) 207, 510
Eco47I GGWCC 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 2 cut(s) 441, 768
EcoT22I ATGCAT 1 cut(s) 362
FaiI YATR 5 cut(s) 66, 188, 285, 362, 633
FokI GGATG 3 cut(s) 398, 659, 827
FspBI CTAG 1 cut(s) 848
GlaI GCGC 1 cut(s) 90
HgaI GACGC 2 cut(s) 442, 610
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 4 cut(s) 200, 279, 374, 635
HinfI GANTC 4 cut(s) 155, 365, 407, 668
HphI GGTGA 1 cut(s) 709
Hpy166II GTNNAC 2 cut(s) 16, 837
Hpy188I TCNGA 5 cut(s) 28, 207, 336, 381, 734
Hpy188III TCNNGA 6 cut(s) 38, 44, 163, 172, 248, 855
Hpy8I GTNNAC 2 cut(s) 16, 837
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 5 cut(s) 391, 514, 520, 652, 805
HpyCH4III ACNGT 2 cut(s) 834, 918
HpyCH4V TGCA 4 cut(s) 77, 319, 360, 489
HpyF3I CTNAG 2 cut(s) 464, 853
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 5 cut(s) 40, 437, 467, 599, 734
LmnI GCTCC 3 cut(s) 217, 502, 857
LweI GCATC 1 cut(s) 498
MaeI CTAG 1 cut(s) 848
MaeIII GTNAC 1 cut(s) 697
MalI GATC 5 cut(s) 42, 439, 469, 601, 736
MboI GATC 5 cut(s) 40, 437, 467, 599, 734
MboII GAAGA 7 cut(s) 59, 96, 224, 242, 527, 832, 895
MflI RGATCY 3 cut(s) 467, 599, 734
MluCI AATT 7 cut(s) 233, 252, 417, 555, 687, 749, 806
MlyI GAGTC 2 cut(s) 374, 416
Mph1103I ATGCAT 1 cut(s) 362
MseI TTAA 4 cut(s) 140, 372, 476, 539
MspCI CTTAAG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 443, 770
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 2 cut(s) 443, 770
MvnI CGCG 1 cut(s) 436
NdeII GATC 5 cut(s) 40, 437, 467, 599, 734
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 697
NsiI ATGCAT 1 cut(s) 362
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 2 cut(s) 155, 668
PflFI GACNNNGTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 373, 415
PpsI GAGTC 2 cut(s) 373, 415
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 441, 768
PspGI CCWGG 2 cut(s) 441, 768
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 339
PspPPI RGGWCCY 1 cut(s) 339
PsuI RGATCY 3 cut(s) 467, 599, 734
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 4 cut(s) 62, 325, 629, 838
RsaNI GTAC 4 cut(s) 61, 324, 628, 837
SaqAI TTAA 4 cut(s) 140, 372, 476, 539
Sau3AI GATC 5 cut(s) 40, 437, 467, 599, 734
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 2 cut(s) 374, 416
ScrFI CCNGG 2 cut(s) 443, 770
SfaNI GCATC 1 cut(s) 498
SinI GGWCC 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 7 cut(s) 233, 252, 417, 555, 687, 749, 806
SspMI CTAG 1 cut(s) 848
StyD4I CCNGG 2 cut(s) 441, 768
TaaI ACNGT 2 cut(s) 834, 918
TaqI TCGA 3 cut(s) 132, 492, 624
TasI AATT 7 cut(s) 233, 252, 417, 555, 687, 749, 806
TatI WGTACW 2 cut(s) 60, 836
TfiI GAWTC 2 cut(s) 155, 668
Tru1I TTAA 4 cut(s) 140, 372, 476, 539
Tru9I TTAA 4 cut(s) 140, 372, 476, 539
TseFI GTSAC 1 cut(s) 697
Tsp45I GTSAC 1 cut(s) 697
Tth111I GACNNNGTC 1 cut(s) 20
Vha464I CTTAAG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 2 cut(s) 687, 749
XspI CTAG 1 cut(s) 848
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.