Rh5BG099600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001786
Physical Location & Seq
Forward (+)
9116959 .. 9117845
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG099600.1

Sequence Viewer

Length: 327 bp
ATGTACCATGTATCTGGCTCACATTTGGTGCTTCTCTGTGACCCATTGGCTATTGCAGTTGCAGAAGAGTTGGCGCAAGAGTTGAGTTCTTTAAATGGGAAATTGAAATCACTTATCGATGACTTAAGAGATGAAGTGGATTCTATCAGGCAGGTATCCTTTGATGAGAAATGCAGCAAGTCCATTAAGCTTCTGATGGATGAGAAGCAGAAGGCAGAGAAGTCTTTGAATATTGAAAAGGAGACGACGAGATCCCAGGCTAATGAACTGGCTTCCCTTAGGCATGCAACTCTAAGTTCAATTCTAGTTAATCATCTTTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

5.51

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 246
AfaI GTAC 1 cut(s) 5
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 4 cut(s) 106, 229, 236, 300
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 278
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 257
BciVI GTATCC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 323
BfrI CTTAAG 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 142
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 273
Bse21I CCTNAGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 186
BshVI ATCGAT 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 251
BspDI ATCGAT 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 246
BspTI CTTAAG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 60
BstAFI CTTAAG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 278, 293
BstF5I GGATG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 254
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 14
BstYI RGATCY 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 278
BsuI GTATCC 1 cut(s) 166
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 1 cut(s) 205
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 1 cut(s) 76
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 8, 284
CviJI RGCY 5 cut(s) 18, 50, 190, 260, 272
CviKI_1 RGCY 5 cut(s) 18, 50, 190, 260, 272
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 278, 293
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
DraI TTTAAA 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco81I CCTNAGG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 11, 287
FaiI YATR 2 cut(s) 9, 285
FatI CATG 2 cut(s) 7, 283
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 11, 287
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 205
HpyCH4V TGCA 4 cut(s) 56, 62, 174, 287
HpyF3I CTNAG 2 cut(s) 278, 293
Hsp92II CATG 2 cut(s) 11, 287
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 133, 137, 242, 254, 269
Lsp1109I GCAGC 1 cut(s) 186
MaeI CTAG 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 1 cut(s) 77
MflI RGATCY 1 cut(s) 251
MluCI AATT 2 cut(s) 101, 300
MseI TTAA 4 cut(s) 92, 125, 186, 309
MspCI CTTAAG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
NdeII GATC 1 cut(s) 251
NlaIII CATG 2 cut(s) 11, 287
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 287
PaeI GCATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 251
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 92, 125, 186, 309
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 257
SetI ASST 2 cut(s) 156, 192
SfcI CTRYAG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SphI GCATGC 1 cut(s) 287
Sse9I AATT 2 cut(s) 101, 300
SspI AATATT 1 cut(s) 232
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 255
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 101, 300
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 4 cut(s) 92, 125, 186, 309
Tru9I TTAA 4 cut(s) 92, 125, 186, 309
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 147, 279
Vha464I CTTAAG 1 cut(s) 124
XceI RCATGY 1 cut(s) 287
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.