Rh5CG513600

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001786
Physical Location & Seq
Reverse (-)
71660882 .. 71663171
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG513600.1

Sequence Viewer

Length: 1047 bp
ATGGCACCCACAGGCACAACCCTCTTTCTAATTATACTAGTCCACATTTGGTTTTGCACCTTATTATTCATTTCCAACACATGCAAAGCCACAAGGCCTACACCAAAATTCCCAGCCATTCTAGTCTTTGGGGATTCAACAGTGGACACAGGCAACAACAATTACCTCAAAACATTGTTTAAGGGTAACCATTATCCATATGGCCAAGATTTTCCAGGTCATGTTACTACAGGCAGGTTTTCTAATGGAAAATTGGTTCCCGACTTCCTTGCCTCCATGTTAAACATCAAAGAAACTGTTCCTCCTTTTCTTGATCCGAGCCTCTCAGATAACAACCTTGTCACCGGTGTCAGCTTTGCTTCGGGTGGATCCGGATTCGACGATATTACAGGTAGTGTAGGTGGGATCATTCCATTTTCAAAGCAGGTTGAGTACTTCAAGAGATACATAGTGAGAGTCCAAGGTATTGTAGGGGAAAAGGAGGCAAAGAAGTTAATTAGTAGTGCAGTGGTTGTGATCAGTGCTGGGACTAATGACTTTGGTTTTAATTTCTATGACATCCCCACAAGAAGGTTAGAGTTCAATATTAGTGGCTACCAAGATTTTCTGCAGAATAAACTGCATATATTCATAGAGGAACTTTATGAGCTTGGATGCAGAAGAATGGCTATAGCTGGGCTTCCTCCAATAGGTTGCCTACCCATACAAATAACTGTAAAAATTGAAAGTCCACATGATAGAAGATGTATAGAGGAAGAAAATTTGGATGCACTTGTATACAATAAGAAGCTTGCAAGGCTCTTGCCCAAAATACAATCACTGCTGCCAAGGAGCAAAATTGTGTATGCAGACGTATATATGCCTTTTATTGACATGATCAATAATCCACTAAACTTTGGTAAGCAAGAAGTTTCCCGACTAACAAATTTGGATCATTTAGAGAAATTTATTTTTTTTCGGTTTTTTAGAAATATGACCACTCGGGTTCCCCATCAAGTTATGATCGGACACACTCATATTTCTATGCATTTGGGCAAGTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

348

Amino Acids

39.21

Weight (kDa)

8.91

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 40 - 289 2.7e-25 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 225, 415
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 777
AccIII TCCGGA 1 cut(s) 371
AclWI GGATC 5 cut(s) 308, 363, 376, 413, 939
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 4 cut(s) 107, 760, 925, 944
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 570, 689
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 5 cut(s) 138, 420, 439, 583, 725
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 4 cut(s) 354, 649, 674, 790
AluI AGCT 4 cut(s) 354, 649, 674, 790
AlwI GGATC 5 cut(s) 308, 363, 376, 413, 939
Ama87I CYCGRG 1 cut(s) 981
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 2 cut(s) 95, 202
ApeKI GCWGC 1 cut(s) 823
ApoI RAATTY 4 cut(s) 107, 760, 925, 944
AsiGI ACCGGT 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 981
BalI TGGCCA 1 cut(s) 204
BamHI GGATCC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 810
BccI CCATC 1 cut(s) 999
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 2 cut(s) 516, 876
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 122
BfmI CTRYAG 3 cut(s) 228, 608, 669
BfuAI ACCTGC 2 cut(s) 225, 415
BisI GCNGC 1 cut(s) 824
BlsI GCNGC 1 cut(s) 825
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 981
BmiI GGNNCC 4 cut(s) 6, 258, 370, 987
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 644, 757
BsaJI CCNNGG 2 cut(s) 460, 827
BsaWI WCCGGW 2 cut(s) 344, 371
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 689
Bse118I RCCGGY 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 460, 827
BseGI GGATG 3 cut(s) 558, 659, 772
BseLI CCNNNNNNNGG 2 cut(s) 570, 689
BseMII CTCAG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 810
BseYI CCCAGC 3 cut(s) 112, 524, 674
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 2 cut(s) 97, 204
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 344
BsiHKCI CYCGRG 1 cut(s) 981
BsiSI CCGG 2 cut(s) 345, 372
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 570, 689
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 2 cut(s) 97, 204
BsoBI CYCGRG 1 cut(s) 981
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
BspANI GGCC 2 cut(s) 97, 204
BspCNI CTCAG 1 cut(s) 338
BspEI TCCGGA 1 cut(s) 371
BspLI GGNNCC 4 cut(s) 6, 258, 370, 987
BspMAI CTGCAG 1 cut(s) 612
BspMI ACCTGC 2 cut(s) 225, 415
BspPI GGATC 5 cut(s) 308, 363, 376, 413, 939
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 460, 827
BssMI GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
BssNAI GTATAC 1 cut(s) 778
BssT1I CCWWGG 2 cut(s) 460, 827
Bst1107I GTATAC 1 cut(s) 778
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 142, 298, 715
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 3 cut(s) 558, 659, 772
BstKTI GATC 7 cut(s) 316, 371, 408, 519, 879, 934, 1005
BstMBI GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
BstMWI GCNNNNNNNGC 1 cut(s) 796
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 84
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 3 cut(s) 228, 608, 669
BstV1I GCAGC 1 cut(s) 810
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BstZ17I GTATAC 1 cut(s) 778
BsuRI GGCC 2 cut(s) 97, 204
BtsCI GGATG 3 cut(s) 558, 659, 772
BtsI GCAGTG 2 cut(s) 513, 818
BtsIMutI CAGTG 4 cut(s) 147, 513, 526, 818
BveI ACCTGC 2 cut(s) 225, 415
Cac8I GCNNGC 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 344
Csp6I GTAC 1 cut(s) 433
CspAI ACCGGT 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 5 cut(s) 81, 221, 277, 734, 874
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 1 cut(s) 325
DpnI GATC 7 cut(s) 315, 370, 407, 518, 878, 933, 1004
DpnII GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
EaeI YGGCCR 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 460, 827
Eco147I AGGCCT 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 981
Eco91I GGTNACC 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 460, 827
EcoT22I ATGCAT 1 cut(s) 1029
ErhI CCWWGG 2 cut(s) 460, 827
FaeI CATG 5 cut(s) 84, 224, 280, 737, 877
FaqI GGGAC 1 cut(s) 541
FatI CATG 5 cut(s) 80, 220, 276, 733, 873
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 2 cut(s) 516, 876
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 1 cut(s) 824
FokI GGATG 3 cut(s) 545, 666, 779
Fsp4HI GCNGC 1 cut(s) 824
FspBI CTAG 2 cut(s) 38, 122
GluI GCNGC 1 cut(s) 824
GsaI CCCAGC 3 cut(s) 116, 528, 678
HaeIII GGCC 2 cut(s) 97, 204
HapII CCGG 2 cut(s) 345, 372
Hin1II CATG 5 cut(s) 84, 224, 280, 737, 877
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 3 cut(s) 134, 375, 456
HpaII CCGG 2 cut(s) 345, 372
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 4 cut(s) 43, 145, 731, 778
Hpy188I TCNGA 3 cut(s) 318, 328, 1007
Hpy188III TCNNGA 5 cut(s) 260, 311, 372, 439, 915
Hpy8I GTNNAC 4 cut(s) 43, 145, 731, 778
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 564
HpyCH4III ACNGT 3 cut(s) 142, 298, 715
HpyCH4IV ACGT 1 cut(s) 852
HpyF10VI GCNNNNNNNGC 1 cut(s) 796
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 852
Hsp92II CATG 5 cut(s) 84, 224, 280, 737, 877
Kpn2I TCCGGA 1 cut(s) 371
Ksp22I TGATCA 2 cut(s) 516, 876
Kzo9I GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
LmnI GCTCC 1 cut(s) 831
Lsp1109I GCAGC 1 cut(s) 810
LweI GCATC 2 cut(s) 644, 757
MaeI CTAG 2 cut(s) 38, 122
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 3 cut(s) 185, 223, 340
MalI GATC 7 cut(s) 315, 370, 407, 518, 878, 933, 1004
MboI GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
MboII GAAGA 3 cut(s) 672, 753, 767
MflI RGATCY 1 cut(s) 368
MlsI TGGCCA 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 1 cut(s) 465
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 9 cut(s) 32, 176, 283, 312, 332, 475, 628, 693, 745
Mox20I TGGCCA 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 1029
MroI TCCGGA 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 297
MscI TGGCCA 1 cut(s) 204
MseI TTAA 4 cut(s) 180, 281, 494, 546
Msp20I TGGCCA 1 cut(s) 204
MspI CCGG 2 cut(s) 345, 372
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 796
NdeI CATATG 1 cut(s) 199
NdeII GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
NlaIII CATG 5 cut(s) 84, 224, 280, 737, 877
NlaIV GGNNCC 4 cut(s) 6, 258, 370, 987
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 1029
NspI RCATGY 1 cut(s) 84
PceI AGGCCT 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 134, 375
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 1 cut(s) 825
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 185
PspFI CCCAGC 3 cut(s) 112, 524, 674
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 4 cut(s) 6, 258, 370, 987
PstI CTGCAG 1 cut(s) 612
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 4 cut(s) 180, 281, 494, 546
SatI GCNGC 1 cut(s) 824
Sau3AI GATC 7 cut(s) 313, 368, 405, 516, 876, 931, 1002
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 1 cut(s) 465
ScrFI CCNGG 1 cut(s) 216
SfaNI GCATC 2 cut(s) 644, 757
SfcI CTRYAG 3 cut(s) 228, 608, 669
SgrAI CRCCGGYG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 37
SseBI AGGCCT 1 cut(s) 97
SspI AATATT 1 cut(s) 586
SspMI CTAG 2 cut(s) 38, 122
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 2 cut(s) 460, 827
TaaI ACNGT 3 cut(s) 142, 298, 715
TaiI ACGT 1 cut(s) 855
TaqI TCGA 1 cut(s) 378
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 2 cut(s) 134, 375
Tru1I TTAA 4 cut(s) 180, 281, 494, 546
Tru9I TTAA 4 cut(s) 180, 281, 494, 546
TscAI CASTG 4 cut(s) 147, 513, 526, 825
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 823
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 58, 619
TspRI CASTG 4 cut(s) 147, 513, 526, 825
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 4 cut(s) 107, 760, 925, 944
XceI RCATGY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 38, 122
ZrmI AGTACT 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.