Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

58999107 .. 59000583

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG363400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGGACAAAGTCTTGGAGTTTAGTCAGGATCAAGAAGAAAGGTTTTTGTACTATGTATCTGTTGCAGAGGAGTTGGCGCAAGAGTTGAGTTCTTCAAATGGGAAATTGAAATCACTTATCGATGACTTGAGAAATGAAGTGGATTCTATCAGGACTTTCAGGAATGAACATTCTACGGAATACCAGAAGCTTCTGATGGAAGAGGAGCAGATGGCAGAAGAATTGAAGCTGTGTCTGGAAATTGGAAAGGACAGGTTCCAATCACAAGCTTATGAACCAACTTTTGTTGGGTCAATCAAAGAAGTGCAATGTACCGACTTTCAGAGGTCCTCCTTTGATGAAAAATGCATAGAGTCCATTAAGCTTCTGATGGATGAGAAGCAGAAGGCAGAGGAGTCTTTGAAAATTGAAAAGGAGATGACGCGATCCCAGGCTAATGAACTGGCTTCCCTTAGGCATGCAACTCTAAGTTCAATTCTAGTTAATCATCTTTTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.44

Weight (kDa)

4.73

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	427
AclWI	GGATC	2 cut(s)	39, 423
AfaI	GTAC	2 cut(s)	53, 316
AgsI	TTSAA	6 cut(s)	99, 112, 229, 406, 413, 477
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	4 cut(s)	193, 232, 272, 367
AluI	AGCT	4 cut(s)	193, 232, 272, 367
AlwI	GGATC	2 cut(s)	39, 423
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	330
AxyI	CCTNAGG	1 cut(s)	455
BccI	CCATC	3 cut(s)	193, 208, 367
BciT130I	CCWGG	1 cut(s)	434
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	500
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	434
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	317
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	3 cut(s)	86, 221, 410
Bsh1236I	CGCG	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	31, 428
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	39, 423
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	31, 428
Bst2UI	CCWGG	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	455, 470
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	34, 431
BstMBI	GATC	2 cut(s)	31, 428
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	500
BstUI	CGCG	1 cut(s)	427
Bsu15I	ATCGAT	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	455
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	52, 315
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	6 cut(s)	193, 232, 272, 367, 437, 449
CviKI_1	RGCY	6 cut(s)	193, 232, 272, 367, 437, 449
CviQI	GTAC	2 cut(s)	52, 315
DdeI	CTNAG	2 cut(s)	455, 470
DpnI	GATC	2 cut(s)	33, 430
DpnII	GATC	2 cut(s)	31, 428
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	353
FaeI	CATG	1 cut(s)	464
FaiI	YATR	4 cut(s)	57, 276, 353, 462
FatI	CATG	1 cut(s)	460
FokI	GGATG	1 cut(s)	389
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	81
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	3 cut(s)	191, 270, 365
HinfI	GANTC	3 cut(s)	146, 356, 398
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	198, 327, 372
Hpy188III	TCNNGA	5 cut(s)	29, 35, 154, 163, 239
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	68, 310, 351, 464
HpyF3I	CTNAG	2 cut(s)	455, 470
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	31, 428
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	14, 139, 148, 200, 224, 241, 419, 431, 446
MaeI	CTAG	1 cut(s)	482
MalI	GATC	2 cut(s)	33, 430
MboI	GATC	2 cut(s)	31, 428
MboII	GAAGA	4 cut(s)	50, 87, 215, 233
MluCI	AATT	5 cut(s)	107, 224, 243, 408, 477
MlyI	GAGTC	2 cut(s)	365, 407
MnlI	CCTC	5 cut(s)	64, 199, 321, 343, 388
Mph1103I	ATGCAT	1 cut(s)	353
MseI	TTAA	2 cut(s)	363, 486
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	427
NdeII	GATC	2 cut(s)	31, 428
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	353
NspI	RCATGY	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	11
PleI	GAGTC	2 cut(s)	364, 406
PpsI	GAGTC	2 cut(s)	364, 406
PpuMI	RGGWCCY	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	330
PspPPI	RGGWCCY	1 cut(s)	330
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	53, 316
RsaNI	GTAC	2 cut(s)	52, 315
SaqAI	TTAA	2 cut(s)	363, 486
Sau3AI	GATC	2 cut(s)	31, 428
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	365, 407
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	7 cut(s)	47, 195, 234, 260, 274, 332, 369
SfcI	CTRYAG	1 cut(s)	500
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	5 cut(s)	107, 224, 243, 408, 477
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	432
TaqI	TCGA	1 cut(s)	123
TasI	AATT	5 cut(s)	107, 224, 243, 408, 477
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	363, 486
Tru9I	TTAA	2 cut(s)	363, 486
TspDTI	ATGAA	5 cut(s)	153, 183, 291, 357, 456
TspGWI	ACGGA	1 cut(s)	194
Tth111I	GACNNNGTC	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	330
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.