Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004550.1

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

40593 .. 46120

Gene Structure 5528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004550.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

atgcagggtctgtacagtaggggagcacggcggttcatggtggcgggtcttccaccgatcggatgccttccgcttcaacggacactgagcagcatcatcaatctgcgccctcagcgcctgtgcgtcacgcagcaaaacatagactgtcagacctacaactccaagctccaggcccttctctcaagtttgcaaaccacactgccactccctagttcaaggctagtctattttgacatctacaaccccatcatggacatgtacaacaacccagataaatatggatttgtgcatatacatgaaggatgctgtggaactgggatgtttgagttggggcctctgtgcacagagttttcgcggacgtgccccgacgcgtcgaagtatcttttctgggatgcagttcatcctactgaagcagcatttttcgtcattgctgactatgctcataagactgtcttgcagtaccttactctcctttctcggtctgaagcctccggcgaaacgtcaccggtgtccgaattcatcacaatggtggacaaagtctcggagtttagtcaagatcaagaagaaaggtttttgtactatgtatctgttgcagaggagttggcgcaagagttgagttcttcaaatgggaaattgaaatcacttattgatgacttgagaaatgaagtggattctatcaggactttcaggaatgtacattctatggaataccagaagcttctgatggaagaggagcagatggcagaagaattgaagctgtgtctggaaattggaaaggacaggttccaatcacaagcttatgatccaacttttgttgggtcaatcaaagaagtgcaatgtaccgactttcagaggtcctcctttgatgaaaaatgcatagagtccattaagcctctgatggatgagaagcagaaggcagaggagtctttgaaaattgaaaaggagatgacgcgatcccaggctaatgaactggcttcccttagatctgccttaaatgaaaagtgcaccgagtggcaggagcttctaagggaagagaaggagaaggcagagaagttaatgctacttttggaaattgaaaaggagagaacacaggctgatgaactggcttctattagatccatctttgatgaaaagtgcgtcgagtaccagaagcttctaatggatgaaaggcagaaggtagaggattcaatgcgactattgaaaattcaaaaggggttaacgcaatcacaagctaatcaactggttttcagatccgccacagatgaatttttggggaaagaaaaccaggcttctaaaaaacttttggaagttttaaaggcagaattgaaggatgtgaagaacagagaactgtgtgcttgtggtcaagtctcaggagcaacaaacaaacgcaaaagagagaagaacgagaaagaggaggaagctaacaatgaacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

478

Amino Acids

54.95

Weight (kDa)

5.12

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	355, 371, 952
AciI	CCGC	5 cut(s)	31, 44, 71, 355, 1254
AclWI	GGATC	4 cut(s)	797, 948, 1110, 1245
AcsI	RAATTY	3 cut(s)	515, 1203, 1265
AcuI	CTGAAG	2 cut(s)	429, 504
AdeI	CACNNNGTG	1 cut(s)	1011
AfaI	GTAC	7 cut(s)	14, 260, 461, 578, 696, 841, 1145
AfiI	CCNNNNNNNGG	2 cut(s)	59, 250
AflIII	ACRYGT	2 cut(s)	255, 369
AgeI	ACCGGT	1 cut(s)	505
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	3 cut(s)	168, 957, 1284
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	8 cut(s)	166, 718, 757, 797, 1021, 1153, 1232, 1421
AluI	AGCT	8 cut(s)	166, 718, 757, 797, 1021, 1153, 1232, 1421
Alw21I	GWGCWC	3 cut(s)	28, 344, 1007
Alw26I	GTCTC	2 cut(s)	544, 1372
Alw44I	GTGCAC	2 cut(s)	340, 1003
AlwI	GGATC	4 cut(s)	797, 948, 1110, 1245
AlwNI	CAGNNNCTG	2 cut(s)	10, 118
AoxI	GGCC	2 cut(s)	171, 332
ApaLI	GTGCAC	2 cut(s)	340, 1003
ApeKI	GCWGC	3 cut(s)	90, 130, 413
ApoI	RAATTY	3 cut(s)	515, 1203, 1265
AsiGI	ACCGGT	1 cut(s)	505
AspLEI	GCGC	3 cut(s)	108, 117, 607
AspS9I	GGNCC	3 cut(s)	172, 332, 855
AsuHPI	GGTGA	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	855
BaeGI	GKGCMC	3 cut(s)	344, 365, 1007
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	3 cut(s)	28, 344, 1007
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	102, 142, 425
BccI	CCATC	5 cut(s)	254, 718, 733, 892, 1127
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	170, 959, 1286
BcoDI	GTCTC	2 cut(s)	544, 1372
BfaI	CTAG	2 cut(s)	210, 221
BfoI	RGCGCY	1 cut(s)	118
BglII	AGATCT	1 cut(s)	983
BisI	GCNGC	3 cut(s)	91, 131, 414
BlsI	GCNGC	3 cut(s)	92, 132, 415
Bme1390I	CCNGG	3 cut(s)	170, 959, 1286
Bme18I	GGWCC	1 cut(s)	855
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	3 cut(s)	172, 332, 855
BmiI	GGNNCC	2 cut(s)	333, 785
BmrFI	CCNGG	3 cut(s)	170, 959, 1286
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	4 cut(s)	53, 102, 293, 382
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	166, 676
BsaJI	CCNNGG	1 cut(s)	957
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 250
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	4 cut(s)	319, 975, 1107, 1245
Bse3DI	GCAATG	2 cut(s)	426, 842
BseBI	CCWGG	3 cut(s)	170, 959, 1286
BseDI	CCNNGG	1 cut(s)	957
BseGI	GGATG	8 cut(s)	68, 308, 324, 397, 400, 907, 1168, 1336
BseLI	CCNNNNNNNGG	2 cut(s)	59, 250
BseMI	GCAATG	2 cut(s)	426, 842
BseMII	CTCAG	3 cut(s)	77, 125, 1383
BseNI	ACTGG	4 cut(s)	319, 975, 1107, 1245
BseRI	GAGGAG	4 cut(s)	611, 746, 935, 1427
BseSI	GKGCMC	3 cut(s)	344, 365, 1007
BseXI	GCAGC	3 cut(s)	102, 142, 425
Bsh1236I	CGCG	3 cut(s)	355, 371, 952
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	173, 334
BshTI	ACCGGT	1 cut(s)	505
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	3 cut(s)	28, 344, 1007
BsiSI	CCGG	2 cut(s)	492, 506
BslI	CCNNNNNNNGG	2 cut(s)	59, 250
BsmAI	GTCTC	2 cut(s)	544, 1372
BsnI	GGCC	2 cut(s)	173, 334
Bsp1286I	GDGCHC	4 cut(s)	28, 344, 365, 1007
Bsp1407I	TGTACA	3 cut(s)	12, 258, 694
Bsp143I	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
BspACI	CCGC	5 cut(s)	31, 44, 71, 355, 1254
BspANI	GGCC	2 cut(s)	173, 334
BspCNI	CTCAG	3 cut(s)	78, 124, 1382
BspFNI	CGCG	3 cut(s)	355, 371, 952
BspLI	GGNNCC	2 cut(s)	333, 785
BspPI	GGATC	4 cut(s)	797, 948, 1110, 1245
BsrDI	GCAATG	2 cut(s)	426, 842
BsrFI	RCCGGY	1 cut(s)	505
BsrGI	TGTACA	3 cut(s)	12, 258, 694
BsrI	ACTGG	4 cut(s)	319, 975, 1107, 1245
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	957
BssMI	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
Bst2UI	CCWGG	3 cut(s)	170, 959, 1286
Bst4CI	ACNGT	5 cut(s)	17, 146, 451, 1350, 1434
Bst6I	CTCTTC	2 cut(s)	723, 1026
BstAUI	TGTACA	3 cut(s)	12, 258, 694
BstDEI	CTNAG	5 cut(s)	86, 111, 980, 1025, 1369
BstF5I	GGATG	8 cut(s)	68, 308, 324, 397, 400, 907, 1168, 1336
BstFNI	CGCG	3 cut(s)	355, 371, 952
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	3 cut(s)	108, 117, 607
BstKTI	GATC	7 cut(s)	60, 559, 805, 956, 986, 1118, 1253
BstMAI	GTCTC	2 cut(s)	544, 1372
BstMBI	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 114, 437
BstNI	CCWGG	3 cut(s)	170, 959, 1286
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	168, 957, 1284
BstSLI	GKGCMC	3 cut(s)	344, 365, 1007
BstUI	CGCG	3 cut(s)	355, 371, 952
BstV1I	GCAGC	3 cut(s)	102, 142, 425
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	3 cut(s)	983, 1115, 1250
BstYI	RGATCY	3 cut(s)	983, 1115, 1250
BsuRI	GGCC	2 cut(s)	173, 334
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	8 cut(s)	68, 308, 324, 397, 400, 907, 1168, 1336
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	83, 197
CaiI	CAGNNNCTG	2 cut(s)	10, 118
CfoI	GCGC	3 cut(s)	108, 117, 607
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	3 cut(s)	172, 332, 855
CseI	GACGC	5 cut(s)	112, 360, 377, 958, 1126
Csp6I	GTAC	7 cut(s)	13, 259, 460, 577, 695, 840, 1144
CspAI	ACCGGT	1 cut(s)	505
CviAII	CATG	4 cut(s)	37, 250, 256, 296
CviQI	GTAC	7 cut(s)	13, 259, 460, 577, 695, 840, 1144
DdeI	CTNAG	5 cut(s)	86, 111, 980, 1025, 1369
DpnI	GATC	7 cut(s)	59, 558, 804, 955, 985, 1117, 1252
DpnII	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
DraI	TTTAAA	1 cut(s)	1314
DraIII	CACNNNGTG	1 cut(s)	1011
Eam1104I	CTCTTC	2 cut(s)	723, 1026
EarI	CTCTTC	2 cut(s)	723, 1026
EciI	GGCGGA	1 cut(s)	1243
Eco47I	GGWCC	1 cut(s)	855
Eco57I	CTGAAG	2 cut(s)	429, 504
EcoO109I	RGGNCCY	3 cut(s)	172, 332, 855
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	168, 957, 1284
EcoT22I	ATGCAT	1 cut(s)	878
FaeI	CATG	4 cut(s)	40, 253, 259, 299
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	4 cut(s)	36, 249, 255, 295
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	91, 131, 414
FokI	GGATG	8 cut(s)	75, 315, 331, 387, 404, 914, 1175, 1343
Fsp4HI	GCNGC	3 cut(s)	91, 131, 414
FspBI	CTAG	2 cut(s)	210, 221
GlaI	GCGC	3 cut(s)	107, 116, 606
GluI	GCNGC	3 cut(s)	91, 131, 414
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	173, 334
HapII	CCGG	2 cut(s)	492, 506
HgaI	GACGC	5 cut(s)	112, 360, 377, 958, 1126
HhaI	GCGC	3 cut(s)	108, 117, 607
Hin1II	CATG	4 cut(s)	40, 253, 259, 299
Hin6I	GCGC	3 cut(s)	106, 115, 605
HinP1I	GCGC	3 cut(s)	106, 115, 605
HincII	GTYRAC	1 cut(s)	1218
HindII	GTYRAC	1 cut(s)	1218
HindIII	AAGCTT	3 cut(s)	716, 795, 1151
HinfI	GANTC	4 cut(s)	671, 881, 923, 1184
HpaI	GTTAAC	1 cut(s)	1218
HpaII	CCGG	2 cut(s)	492, 506
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	4 cut(s)	342, 532, 1005, 1218
Hpy188I	TCNGA	9 cut(s)	62, 150, 484, 514, 544, 723, 852, 897, 1250
Hpy188III	TCNNGA	6 cut(s)	554, 560, 679, 688, 764, 1371
Hpy8I	GTNNAC	4 cut(s)	342, 532, 1005, 1218
Hpy99I	CGWCG	3 cut(s)	371, 376, 1142
HpyAV	CCTTC	8 cut(s)	77, 185, 293, 907, 1030, 1036, 1168, 1321
HpyCH4III	ACNGT	5 cut(s)	17, 146, 451, 1350, 1434
HpyCH4IV	ACGT	2 cut(s)	359, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 114, 437
HpyF3I	CTNAG	5 cut(s)	86, 111, 980, 1025, 1369
HpySE526I	ACGT	2 cut(s)	359, 500
Hsp92II	CATG	4 cut(s)	40, 253, 259, 299
HspAI	GCGC	3 cut(s)	106, 115, 605
KspAI	GTTAAC	1 cut(s)	1218
Kzo9I	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
LmnI	GCTCC	5 cut(s)	23, 171, 733, 1018, 1373
Lsp1109I	GCAGC	3 cut(s)	102, 142, 425
LweI	GCATC	4 cut(s)	53, 102, 293, 382
MaeI	CTAG	2 cut(s)	210, 221
MaeII	ACGT	2 cut(s)	359, 500
MaeIII	GTNAC	2 cut(s)	124, 501
MalI	GATC	7 cut(s)	59, 558, 804, 955, 985, 1117, 1252
MboI	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
MboII	GAAGA	8 cut(s)	41, 575, 612, 740, 758, 1043, 1348, 1411
MflI	RGATCY	3 cut(s)	983, 1115, 1250
MhlI	GDGCHC	4 cut(s)	28, 344, 365, 1007
MluCI	AATT	9 cut(s)	515, 632, 749, 768, 933, 1071, 1203, 1265, 1322
MluI	ACGCGT	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	890, 932
MmeI	TCCRAC	1 cut(s)	830
Mph1103I	ATGCAT	1 cut(s)	878
MseI	TTAA	5 cut(s)	888, 992, 1055, 1217, 1313
MslI	CAYNNNNRTG	4 cut(s)	254, 294, 524, 527
MspI	CCGG	2 cut(s)	492, 506
MspR9I	CCNGG	3 cut(s)	170, 959, 1286
MvaI	CCWGG	3 cut(s)	170, 959, 1286
MvnI	CGCG	3 cut(s)	355, 371, 952
MwoI	GCNNNNNNNGC	3 cut(s)	112, 114, 437
NdeII	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
NlaIII	CATG	4 cut(s)	40, 253, 259, 299
NlaIV	GGNNCC	2 cut(s)	333, 785
NmuCI	GTSAC	2 cut(s)	124, 501
NsiI	ATGCAT	1 cut(s)	878
NspI	RCATGY	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	527
PciI	ACATGT	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	671, 1184
PflFI	GACNNNGTC	1 cut(s)	536
PinAI	ACCGGT	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	92, 132, 415
Ple19I	CGATCG	1 cut(s)	60
PleI	GAGTC	2 cut(s)	889, 931
PpsI	GAGTC	2 cut(s)	889, 931
PpuMI	RGGWCCY	1 cut(s)	855
PscI	ACATGT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	855
Psp6I	CCWGG	3 cut(s)	168, 957, 1284
PspGI	CCWGG	3 cut(s)	168, 957, 1284
PspN4I	GGNNCC	2 cut(s)	333, 785
PspPI	GGNCC	3 cut(s)	172, 332, 855
PspPPI	RGGWCCY	1 cut(s)	855
PstNI	CAGNNNCTG	2 cut(s)	10, 118
PsuI	RGATCY	3 cut(s)	983, 1115, 1250
PsyI	GACNNNGTC	1 cut(s)	536
PvuI	CGATCG	1 cut(s)	60
RsaI	GTAC	7 cut(s)	14, 260, 461, 578, 696, 841, 1145
RsaNI	GTAC	7 cut(s)	13, 259, 460, 577, 695, 840, 1144
RseI	CAYNNNNRTG	4 cut(s)	254, 294, 524, 527
SaqAI	TTAA	5 cut(s)	888, 992, 1055, 1217, 1313
SatI	GCNGC	3 cut(s)	91, 131, 414
Sau3AI	GATC	7 cut(s)	57, 556, 802, 953, 983, 1115, 1250
Sau96I	GGNCC	3 cut(s)	172, 332, 855
SchI	GAGTC	2 cut(s)	890, 932
ScrFI	CCNGG	3 cut(s)	170, 959, 1286
SduI	GDGCHC	4 cut(s)	28, 344, 365, 1007
SfaNI	GCATC	4 cut(s)	53, 102, 293, 382
SgrAI	CRCCGGYG	1 cut(s)	505
SinI	GGWCC	1 cut(s)	855
SmiMI	CAYNNNNRTG	4 cut(s)	254, 294, 524, 527
SmlI	CTYRAG	2 cut(s)	181, 655
SmoI	CTYRAG	2 cut(s)	181, 655
Sse9I	AATT	9 cut(s)	515, 632, 749, 768, 933, 1071, 1203, 1265, 1322
SsiI	CCGC	5 cut(s)	31, 44, 71, 355, 1254
SspMI	CTAG	2 cut(s)	210, 221
StyD4I	CCNGG	3 cut(s)	168, 957, 1284
TaaI	ACNGT	5 cut(s)	17, 146, 451, 1350, 1434
TaiI	ACGT	2 cut(s)	362, 503
TaqI	TCGA	2 cut(s)	374, 1140
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	9 cut(s)	515, 632, 749, 768, 933, 1071, 1203, 1265, 1322
TatI	WGTACW	4 cut(s)	12, 258, 576, 694
TfiI	GAWTC	2 cut(s)	671, 1184
Tru1I	TTAA	5 cut(s)	888, 992, 1055, 1217, 1313
Tru9I	TTAA	5 cut(s)	888, 992, 1055, 1217, 1313
TscAI	CASTG	2 cut(s)	90, 204
TseFI	GTSAC	2 cut(s)	124, 501
TseI	GCWGC	3 cut(s)	90, 130, 413
Tsp45I	GTSAC	2 cut(s)	124, 501
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	90, 204
Tth111I	GACNNNGTC	1 cut(s)	536
VneI	GTGCAC	2 cut(s)	340, 1003
VpaK11BI	GGWCC	1 cut(s)	855
XapI	RAATTY	3 cut(s)	515, 1203, 1265
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	2 cut(s)	210, 221
Zsp2I	ATGCAT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.