Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

3439841 .. 3441768

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G047900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCTGCAAAAACAAGTGAAAAAAATGGCACCCACAACACTTTTTCTCATGCACATTTGGTTTTGGATCACATGCAGTGTCAATGCCACAAGGCCTTCACCAAAATTCCCAGCCATTCTAGTCTTTGGTGATTCAACAGTGGACACTGGCAACAACAATTACCTCAAAACAGTGGCCAAGGGTAACCATTTCCCCTATGGTAAAGACTTTCCTGGTAAAGTTCCAACAGGCAGGTTTTCTAATGGAAAACTTGTCCCTGACTTCATTGCCTCCCTCTTAAAGATCAAAGAAGCCGTTCCTCCTTTTCTTGATCCAAGCCTTTCAAACAACGACCTTGTCACCGGTGTCAGCTTTGCGTCAGGGGGATCCGGATACGATGATATAACTGCTGCCGTTGTCGGGATCATACCATTTTCAGAGCAGATTGAGTTGTTCAAGAAATACATTGTGAGAGTTGAGGGGATTTTGGGGGAAAAGGAGGCTGACAAGTTAATTAATCGTGCACTTGTTATAATAAGTGCAGGTACCAATGACTTTGGTTTCAATATCTATGACATACCCACAAGAAGATTAGAGTTCAACATTACTGGGTACCAAGATTTTCTGCAGAAAAAGCTACAAATGTTCATTAAGGAACTGTATGAGCTTGGATGCAGAAAAATAGTAATAACAGGGCTTCCTCCAATAGGCTGCCTGCCCATACAAATAACTGCAAAATCTGGAAATCCAAAGAATAGAATATGTGTAGACAATGAGAATTCAGATGCCCAAATTTACAATCAAAAGCTTGCAAAACTATTGCCCAAGATACAGTCACTCTTTCCAGGGAGCAAAATTGTCTATGCAGATGTCTATGAGCCGTTAACTGACATGATCAACAATCCACAAAAATTTGGTTTTGTGGAAACAAAGAGAGGCTGCTGCGGTACAGGGCTTGTGGAAGCAGGGCCTCTGTGCAATGCATTGACACCACTATGTGCCAATGACTTGGAGTACTTATTTTGGGACAGCATACATCCCAGTGAAGCTGCCTACCAGTACATTTCTAAGTACTTGGAGAAGGAAGTCCTTCCAAAGCTTGCTTATGATCATCAATCACAGCAGTTGATTAGTCTATCCGCTCTAACAGATCATCGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

381

Amino Acids

42.31

Weight (kDa)

8.27

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
Acc36I	ACCTGC	2 cut(s)	222, 512
Acc65I	GGTACC	2 cut(s)	524, 591
AccB1I	GGYRCC	3 cut(s)	28, 524, 591
AccBSI	CCGCTC	1 cut(s)	1121
AccI	GTMKAC	1 cut(s)	747
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	2 cut(s)	924, 1119
AclWI	GGATC	5 cut(s)	74, 305, 360, 373, 410
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	4 cut(s)	104, 757, 771, 890
AdeI	CACNNNGTG	1 cut(s)	977
AfaI	GTAC	6 cut(s)	526, 593, 928, 995, 1040, 1052
AfiI	CCNNNNNNNGG	2 cut(s)	399, 686
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	5 cut(s)	135, 324, 436, 544, 580
AjnI	CCWGG	2 cut(s)	211, 823
AluBI	AGCT	6 cut(s)	351, 616, 646, 787, 1028, 1078
AluI	AGCT	6 cut(s)	351, 616, 646, 787, 1028, 1078
Alw21I	GWGCWC	1 cut(s)	505
Alw44I	GTGCAC	1 cut(s)	501
AlwI	GGATC	5 cut(s)	74, 305, 360, 373, 410
Aor13HI	TCCGGA	1 cut(s)	368
AoxI	GGCC	3 cut(s)	92, 174, 947
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	6 cut(s)	4, 389, 690, 918, 921, 1028
ApoI	RAATTY	4 cut(s)	104, 757, 771, 890
AseI	ATTAAT	1 cut(s)	495
AsiGI	ACCGGT	1 cut(s)	341
Asp700I	GAANNNNTTC	2 cut(s)	294, 1068
Asp718I	GGTACC	2 cut(s)	524, 591
AspS9I	GGNCC	1 cut(s)	947
AsuHPI	GGTGA	3 cut(s)	90, 140, 331
BaeGI	GKGCMC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	365
BanI	GGYRCC	3 cut(s)	28, 524, 591
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	5 cut(s)	376, 677, 905, 908, 1015
BceAI	ACGGC	3 cut(s)	278, 377, 844
BciT130I	CCWGG	2 cut(s)	213, 825
BciVI	GTATCC	1 cut(s)	365
BclI	TGATCA	2 cut(s)	873, 1087
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	605
BfuAI	ACCTGC	2 cut(s)	222, 512
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	6 cut(s)	5, 390, 691, 919, 922, 1029
BlsI	GCNGC	6 cut(s)	6, 391, 692, 920, 923, 1030
BmcAI	AGTACT	2 cut(s)	995, 1052
Bme1390I	CCNGG	2 cut(s)	213, 825
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	4 cut(s)	30, 367, 526, 593
BmrFI	CCNGG	2 cut(s)	213, 825
BmrI	ACTGGG	2 cut(s)	597, 1014
BmsI	GCATC	2 cut(s)	641, 754
BmuI	ACTGGG	2 cut(s)	597, 1014
Bsa29I	ATCGAT	1 cut(s)	1135
BsaJI	CCNNGG	2 cut(s)	177, 824
BsaWI	WCCGGW	2 cut(s)	341, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 686
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	4 cut(s)	151, 592, 1020, 1036
Bse3DI	GCAATG	2 cut(s)	264, 964
BseAI	TCCGGA	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	213, 825
BseCI	ATCGAT	1 cut(s)	1135
BseDI	CCNNGG	2 cut(s)	177, 824
BseGI	GGATG	2 cut(s)	656, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	399, 686
BseMI	GCAATG	2 cut(s)	264, 964
BseNI	ACTGG	4 cut(s)	151, 592, 1020, 1036
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	5 cut(s)	376, 677, 905, 908, 1015
BseYI	CCCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	3 cut(s)	94, 176, 949
BshNI	GGYRCC	3 cut(s)	28, 524, 591
BshTI	ACCGGT	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	1135
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	342, 369
BslFI	GGGAC	2 cut(s)	239, 1019
BslI	CCNNNNNNNGG	2 cut(s)	399, 686
BsmFI	GGGAC	2 cut(s)	239, 1019
BsnI	GGCC	3 cut(s)	94, 176, 949
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp13I	TCCGGA	1 cut(s)	368
Bsp143I	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
BspACI	CCGC	2 cut(s)	924, 1119
BspANI	GGCC	3 cut(s)	94, 176, 949
BspDI	ATCGAT	1 cut(s)	1135
BspEI	TCCGGA	1 cut(s)	368
BspLI	GGNNCC	4 cut(s)	30, 367, 526, 593
BspMAI	CTGCAG	1 cut(s)	609
BspMI	ACCTGC	2 cut(s)	222, 512
BspPI	GGATC	5 cut(s)	74, 305, 360, 373, 410
BspT107I	GGYRCC	3 cut(s)	28, 524, 591
BsrBI	CCGCTC	1 cut(s)	1121
BsrDI	GCAATG	2 cut(s)	264, 964
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	4 cut(s)	151, 592, 1020, 1036
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	177, 824
BssMI	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	213, 825
Bst4CI	ACNGT	4 cut(s)	139, 172, 639, 813
BstC8I	GCNNGC	3 cut(s)	695, 789, 1080
BstDEI	CTNAG	1 cut(s)	1047
BstEII	GGTNACC	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstF5I	GGATG	2 cut(s)	656, 1015
BstKTI	GATC	8 cut(s)	69, 285, 313, 368, 405, 876, 1090, 1132
BstMBI	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNI	CCWGG	2 cut(s)	213, 825
BstNSI	RCATGY	1 cut(s)	75
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	211, 823
BstSFI	CTRYAG	1 cut(s)	605
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	5 cut(s)	376, 677, 905, 908, 1015
BstX2I	RGATCY	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	1135
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	94, 176, 949
BsuTUI	ATCGAT	1 cut(s)	1135
BtsCI	GGATG	2 cut(s)	656, 1015
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	5 cut(s)	82, 144, 144, 177, 1027
BveI	ACCTGC	2 cut(s)	222, 512
Cac8I	GCNNGC	3 cut(s)	695, 789, 1080
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	947
ClaI	ATCGAT	1 cut(s)	1135
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	6 cut(s)	525, 592, 927, 994, 1039, 1051
CspAI	ACCGGT	1 cut(s)	341
CviAII	CATG	3 cut(s)	49, 72, 871
CviQI	GTAC	6 cut(s)	525, 592, 927, 994, 1039, 1051
DdeI	CTNAG	1 cut(s)	1047
DpnI	GATC	8 cut(s)	68, 284, 312, 367, 404, 875, 1089, 1131
DpnII	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
DraIII	CACNNNGTG	1 cut(s)	977
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	94
Eco91I	GGTNACC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	947
EcoO65I	GGTNACC	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	2 cut(s)	211, 823
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	964
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	52, 75, 874
FaqI	GGGAC	2 cut(s)	239, 1019
FatI	CATG	3 cut(s)	48, 71, 870
FbaI	TGATCA	2 cut(s)	873, 1087
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	6 cut(s)	5, 390, 691, 919, 922, 1029
FokI	GGATG	2 cut(s)	663, 1002
Fsp4HI	GCNGC	6 cut(s)	5, 390, 691, 919, 922, 1029
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	6 cut(s)	5, 390, 691, 919, 922, 1029
GsaI	CCCAGC	1 cut(s)	113
HaeIII	GGCC	3 cut(s)	94, 176, 949
HapII	CCGG	2 cut(s)	342, 369
HgaI	GACGC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	52, 75, 874
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	2 cut(s)	785, 1076
HinfI	GANTC	1 cut(s)	131
HpaI	GTTAAC	1 cut(s)	864
HpaII	CCGG	2 cut(s)	342, 369
HphI	GGTGA	3 cut(s)	90, 140, 331
Hpy166II	GTNNAC	4 cut(s)	142, 503, 748, 864
Hpy188I	TCNGA	2 cut(s)	418, 763
Hpy188III	TCNNGA	5 cut(s)	308, 369, 400, 436, 720
Hpy8I	GTNNAC	4 cut(s)	142, 503, 748, 864
HpyAV	CCTTC	3 cut(s)	105, 1054, 1079
HpyCH4III	ACNGT	4 cut(s)	139, 172, 639, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpyF3I	CTNAG	1 cut(s)	1047
Hsp92II	CATG	3 cut(s)	52, 75, 874
Kpn2I	TCCGGA	1 cut(s)	368
KpnI	GGTACC	2 cut(s)	528, 595
Ksp22I	TGATCA	2 cut(s)	873, 1087
KspAI	GTTAAC	1 cut(s)	864
Kzo9I	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
LmnI	GCTCC	1 cut(s)	828
Lsp1109I	GCAGC	5 cut(s)	376, 677, 905, 908, 1015
LweI	GCATC	2 cut(s)	641, 754
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	3 cut(s)	182, 337, 813
MalI	GATC	8 cut(s)	68, 284, 312, 367, 404, 875, 1089, 1131
MbiI	CCGCTC	1 cut(s)	1121
MboI	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
MboII	GAAGA	1 cut(s)	579
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	7 cut(s)	104, 157, 492, 757, 771, 834, 890
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	9 cut(s)	173, 280, 284, 309, 451, 472, 690, 908, 960
Mox20I	TGGCCA	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	964
MroI	TCCGGA	1 cut(s)	368
MroXI	GAANNNNTTC	2 cut(s)	294, 1068
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	5 cut(s)	278, 491, 495, 630, 863
MslI	CAYNNNNRTG	2 cut(s)	973, 1020
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	2 cut(s)	342, 369
MspR9I	CCNGG	2 cut(s)	213, 825
MvaI	CCWGG	2 cut(s)	213, 825
MwoI	GCNNNNNNNGC	1 cut(s)	613
NdeII	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
NlaIII	CATG	3 cut(s)	52, 75, 874
NlaIV	GGNNCC	4 cut(s)	30, 367, 526, 593
NmuCI	GTSAC	2 cut(s)	337, 813
NsiI	ATGCAT	1 cut(s)	964
NspI	RCATGY	1 cut(s)	75
PacI	TTAATTAA	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	294, 1068
PfeI	GAWTC	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	6, 391, 692, 920, 923, 1030
PshBI	ATTAAT	1 cut(s)	495
PsiI	TTATAA	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	211, 823
PspEI	GGTNACC	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	2 cut(s)	211, 823
PspN4I	GGNNCC	4 cut(s)	30, 367, 526, 593
PspPI	GGNCC	1 cut(s)	947
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	365
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	6 cut(s)	526, 593, 928, 995, 1040, 1052
RsaNI	GTAC	6 cut(s)	525, 592, 927, 994, 1039, 1051
RseI	CAYNNNNRTG	2 cut(s)	973, 1020
SaqAI	TTAA	5 cut(s)	278, 491, 495, 630, 863
SatI	GCNGC	6 cut(s)	5, 390, 691, 919, 922, 1029
Sau3AI	GATC	8 cut(s)	66, 282, 310, 365, 402, 873, 1087, 1129
Sau96I	GGNCC	1 cut(s)	947
ScaI	AGTACT	2 cut(s)	995, 1052
ScrFI	CCNGG	2 cut(s)	213, 825
SduI	GDGCHC	1 cut(s)	505
SfaNI	GCATC	2 cut(s)	641, 754
SfcI	CTRYAG	1 cut(s)	605
SgrAI	CRCCGGYG	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	973, 1020
Sse9I	AATT	7 cut(s)	104, 157, 492, 757, 771, 834, 890
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	924, 1119
SspMI	CTAG	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	211, 823
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	4 cut(s)	139, 172, 639, 813
TaqI	TCGA	1 cut(s)	1135
TasI	AATT	7 cut(s)	104, 157, 492, 757, 771, 834, 890
TatI	WGTACW	3 cut(s)	993, 1038, 1050
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	5 cut(s)	278, 491, 495, 630, 863
Tru9I	TTAA	5 cut(s)	278, 491, 495, 630, 863
TscAI	CASTG	5 cut(s)	82, 144, 151, 177, 1027
TseFI	GTSAC	2 cut(s)	337, 813
TseI	GCWGC	6 cut(s)	4, 389, 690, 918, 921, 1028
Tsp45I	GTSAC	2 cut(s)	337, 813
TspDTI	ATGAA	2 cut(s)	253, 616
TspRI	CASTG	5 cut(s)	82, 144, 151, 177, 1027
Tth111I	GACNNNGTC	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	501
VspI	ATTAAT	1 cut(s)	495
XagI	CCTNNNNNAGG	1 cut(s)	684
XapI	RAATTY	4 cut(s)	104, 757, 771, 890
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	2 cut(s)	294, 1068
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	2 cut(s)	995, 1052
Zsp2I	ATGCAT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.