Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009615.1

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 1471

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggatgagaagcagaaggcagaggagtctttgaaaattgaaaaggagatgacgggatcccaggctaaggaactggcttcccttagatctgccttaaatgaaaagtgcaccgagtggcaggagcttctaagggaagagaaggagaaggcagagaagttaatgctacttttggaaattgaaaaggagagaacacaggctgatgaactggcttctattagatccatctttgatgaaaagtgcgtcgagtaccagaagcttctaatggatgaaaggcagaaggtagaggattcaatgcgactattgaaaattcaaaaggggttaacgcaatcacaagctaatcaactggttttcagatccgccacagatgaatttttggggaaagaaaaccaggcttctaaaaaacttttggaagttttaaaggcagaattgaaggatgtgaagaacagagaactgtgtgcttgtggtcaagtctcaggagcaacaaacaaacgcaaaagagagaagaacgagaaagaggaggaagctaacaatgaacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.77

Weight (kDa)

5.34

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	4 cut(s)	51, 64, 213, 348
AcsI	RAATTY	2 cut(s)	306, 368
AdeI	CACNNNGTG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	7 cut(s)	34, 41, 179, 291, 304, 311, 430
AjnI	CCWGG	2 cut(s)	60, 387
AluBI	AGCT	4 cut(s)	124, 256, 335, 524
AluI	AGCT	4 cut(s)	124, 256, 335, 524
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	106
AlwI	GGATC	4 cut(s)	51, 64, 213, 348
ApaLI	GTGCAC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	306, 368
BaeGI	GKGCMC	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	110
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	62, 389
BcoDI	GTCTC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	62, 389
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	62, 389
Bpu10I	CCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	3 cut(s)	78, 210, 348
BseBI	CCWGG	2 cut(s)	62, 389
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	10, 271, 439
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	3 cut(s)	78, 210, 348
BseRI	GAGGAG	2 cut(s)	38, 530
BseSI	GKGCMC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	56, 86, 218, 353
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	4 cut(s)	51, 64, 213, 348
BsrI	ACTGG	3 cut(s)	78, 210, 348
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	4 cut(s)	56, 86, 218, 353
Bst2UI	CCWGG	2 cut(s)	62, 389
Bst4CI	ACNGT	2 cut(s)	453, 537
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	66, 83, 128, 472
BstF5I	GGATG	3 cut(s)	10, 271, 439
BstKTI	GATC	4 cut(s)	59, 89, 221, 356
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	4 cut(s)	56, 86, 218, 353
BstNI	CCWGG	2 cut(s)	62, 389
BstSCI	CCNGG	2 cut(s)	60, 387
BstSLI	GKGCMC	1 cut(s)	110
BstX2I	RGATCY	4 cut(s)	56, 86, 218, 353
BstYI	RGATCY	4 cut(s)	56, 86, 218, 353
BtsCI	GGATG	3 cut(s)	10, 271, 439
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	247
CviJI	RGCY	9 cut(s)	65, 77, 124, 197, 209, 256, 335, 392, 524
CviKI_1	RGCY	9 cut(s)	65, 77, 124, 197, 209, 256, 335, 392, 524
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	4 cut(s)	66, 83, 128, 472
DpnI	GATC	4 cut(s)	58, 88, 220, 355
DpnII	GATC	4 cut(s)	56, 86, 218, 353
DraI	TTTAAA	1 cut(s)	417
DraIII	CACNNNGTG	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	60, 387
FokI	GGATG	3 cut(s)	17, 278, 446
HgaI	GACGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	26, 287
HpaI	GTTAAC	1 cut(s)	321
Hpy166II	GTNNAC	2 cut(s)	108, 321
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	1 cut(s)	474
Hpy8I	GTNNAC	2 cut(s)	108, 321
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	5 cut(s)	10, 133, 139, 271, 424
HpyCH4III	ACNGT	2 cut(s)	453, 537
HpyCH4V	TGCA	1 cut(s)	108
HpyF3I	CTNAG	4 cut(s)	66, 83, 128, 472
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	56, 86, 218, 353
LmnI	GCTCC	2 cut(s)	121, 476
MalI	GATC	4 cut(s)	58, 88, 220, 355
MboI	GATC	4 cut(s)	56, 86, 218, 353
MboII	GAAGA	3 cut(s)	146, 451, 514
MflI	RGATCY	4 cut(s)	56, 86, 218, 353
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	5 cut(s)	36, 174, 306, 368, 425
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	4 cut(s)	16, 277, 508, 511
MseI	TTAA	4 cut(s)	95, 158, 320, 416
MspR9I	CCNGG	2 cut(s)	62, 389
MvaI	CCWGG	2 cut(s)	62, 389
NdeII	GATC	4 cut(s)	56, 86, 218, 353
NlaIV	GGNNCC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	60, 387
PspGI	CCWGG	2 cut(s)	60, 387
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	4 cut(s)	56, 86, 218, 353
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	4 cut(s)	95, 158, 320, 416
Sau3AI	GATC	4 cut(s)	56, 86, 218, 353
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	62, 389
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	5 cut(s)	126, 258, 282, 337, 526
Sse9I	AATT	5 cut(s)	36, 174, 306, 368, 425
SsiI	CCGC	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	60, 387
TaaI	ACNGT	2 cut(s)	453, 537
TaqI	TCGA	1 cut(s)	243
TasI	AATT	5 cut(s)	36, 174, 306, 368, 425
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	4 cut(s)	95, 158, 320, 416
Tru9I	TTAA	4 cut(s)	95, 158, 320, 416
TspDTI	ATGAA	5 cut(s)	114, 216, 246, 282, 381
VneI	GTGCAC	1 cut(s)	106
XapI	RAATTY	2 cut(s)	306, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.