AT2G26800

HMGL-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
11429019 .. 11432797
3779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26800.4

Sequence Viewer

Length: 1302 bp
ATGTCGAGTTTGGAGGAGCCGCTAAGCTTTGACAAGTTGCCAAGTATGAGCACTATGGATAGGATTCAGAGATTTTCTTCCGGTGCTTGTCGCCCCAGGGATGATGTCGGTATGGGACACCGTTGGATTGAAGGAAGAGATTGCACTACCTCTAACAGTTGCATTGATGATGATAAAAGCTTTGCTAAAGAGTCATTCCCGTGGAGAAGGCATACTCGGAAATTATCTGAAGGAGAGCATATGTTTAGGAATATTTCGTTTGCTGGAAGGACTTCTACTGTTTCTGGGACTTTAAGGGAATCCAAAAGTTTTAAGGAGCAGAAGTATAGCACATTTAGCAATGAGAATGGCACGTCGCATATAAGTAATAAGATCTCTAAAGGTATACCAAAGTTTGTGAAGATTGTAGAAGTTGGTCCAAGAGATGGCCTGCAGAATGAGAAAAATATAGTACCCACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGATTGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAGTGGGTTCCCCAGCTTGCAGATGCAAAGGATGTAATGGATGCAGTAAATACTTTAGATGGGGCTCGATTACCGGTTCTGACACCGAATCTAAAAGGCTTTCAAGCGGCTGTATCTGCAGGTGCAAAGGAAGTTGCAATCTTTGCATCGGCTTCTGAGTCATTCTCCTTGTCAAATATTAACTGTACCATCGAAGAGAGTCTCTTGAGATATCGTGTTGTTGCCACTGCTGCAAAGGAGCATTCGGTTCCAGTCCGTGGGTATGTATCTTGCGTTGTGGGGTGTCCAGTAGAGGGACCTGTTCTACCCTCAAAAGTGGCTTATGTTGTGAAAGAACTCTATGACATGGGCTGCTTTGAGATTTCTCTGGGTGATACAATTGGAATCGGCACTCCTGGTTCTGTGGTTCCAATGCTTGAAGCCGTGATGGCAGTTGTGCCAGCGGACAAGCTGGCTGTTCACTTCCATGATACCTATGGGCAAGCTCTTGCAAACATATTGGTGTCTCTCCAGATGGGAATAAGCATAGTAGACTCATCAATTGCCGGATTAGGCGGCTGCCCATATGCAAAAGGAGCTTCAGGAAATGTAGCCACAGAAGATGTGGTTTACATGTTGAACGGTTTAGGCGTCCACACCAATGTCGACTTGGGAAAGCTTATAGCTGCTGGAGATTTCATCAGCAAGCATCTCGGTCGTCCCAATGGTTCGAAGGCTGCCGTTGCCCTCAACCGTCGTATCACAGCTGATGCCTCCAAGATATGA

Protein Analysis

433

Amino Acids

46.38

Weight (kDa)

8.04

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMGL-like PF00682 168 - 441 4.8e-54 HMGL-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 647
AccB7I CCANNNNNTGG 2 cut(s) 425, 794
AccI GTMKAC 3 cut(s) 385, 1068, 1182
AciI CCGC 4 cut(s) 20, 644, 980, 1092
AcuI CTGAAG 2 cut(s) 249, 1101
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 2 cut(s) 453, 724
AfiI CCNNNNNNNGG 3 cut(s) 425, 794, 830
AflIII ACRYGT 1 cut(s) 1149
AgeI ACCGGT 1 cut(s) 610
AgsI TTSAA 4 cut(s) 131, 641, 956, 1156
AjiI CACGTC 1 cut(s) 354
AjnI CCWGG 2 cut(s) 95, 931
AleI CACNNNNGTG 1 cut(s) 538
AluBI AGCT 9 cut(s) 27, 180, 553, 988, 1022, 1115, 1195, 1202, 1283
AluI AGCT 9 cut(s) 27, 180, 553, 988, 1022, 1115, 1195, 1202, 1283
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 743, 1047
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 5 cut(s) 767, 888, 1095, 1202, 1253
AsiGI ACCGGT 1 cut(s) 610
Asp700I GAANNNNTTC 2 cut(s) 271, 477
AspS9I GGNCC 2 cut(s) 416, 833
AsuHPI GGTGA 2 cut(s) 525, 920
AsuII TTCGAA 1 cut(s) 1247
AvaII GGWCC 2 cut(s) 416, 833
BaeI ACNNNNGTAYC 2 cut(s) 1258, 1291
BanII GRGCYC 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 259, 291
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 5 cut(s) 754, 875, 1082, 1189, 1240
BccI CCATC 5 cut(s) 419, 590, 734, 958, 1045
BceAI ACGGC 2 cut(s) 944, 1241
BcgI CGANNNNNNTGC 4 cut(s) 1210, 1214, 1244, 1248
BciT130I CCWGG 2 cut(s) 97, 933
BcoDI GTCTC 2 cut(s) 743, 1047
BfmI CTRYAG 2 cut(s) 431, 654
BfuAI ACCTGC 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 965
BglII AGATCT 1 cut(s) 372
BisI GCNGC 8 cut(s) 20, 645, 768, 889, 1093, 1096, 1203, 1254
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 8 cut(s) 21, 646, 769, 890, 1094, 1097, 1204, 1255
Bme1390I CCNGG 2 cut(s) 97, 933
Bme18I GGWCC 2 cut(s) 416, 833
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 416, 833
BmiI GGNNCC 5 cut(s) 18, 546, 786, 834, 945
BmrFI CCNGG 2 cut(s) 97, 933
BmsI GCATC 5 cut(s) 550, 568, 692, 1234, 1276
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpmI CTGGAG 2 cut(s) 1031, 1227
Bpu1102I GCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 1247
BpuEI CTTGAG 1 cut(s) 763
BsaHI GRCGYC 1 cut(s) 1167
BsaJI CCNNGG 4 cut(s) 95, 96, 200, 793
BsaWI WCCGGW 2 cut(s) 80, 610
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 794, 830
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 2 cut(s) 788, 824
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 2 cut(s) 97, 933
BseDI CCNNGG 4 cut(s) 95, 96, 200, 793
BseGI GGATG 3 cut(s) 106, 574, 583
BseLI CCNNNNNNNGG 3 cut(s) 425, 794, 830
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 2 cut(s) 788, 824
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 5 cut(s) 754, 875, 1082, 1189, 1240
BseYI CCCAGC 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 1234
BshFI GGCC 1 cut(s) 429
BshTI ACCGGT 1 cut(s) 610
BsiEI CGRYCG 1 cut(s) 1234
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 81, 611, 1083
BslFI GGGAC 4 cut(s) 129, 301, 846, 1221
BslI CCNNNNNNNGG 3 cut(s) 425, 794, 830
BsmAI GTCTC 2 cut(s) 743, 1047
BsmFI GGGAC 4 cut(s) 129, 301, 846, 1221
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 1 cut(s) 429
Bsp119I TTCGAA 1 cut(s) 1247
Bsp1286I GDGCHC 2 cut(s) 53, 604
Bsp143I GATC 1 cut(s) 372
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 4 cut(s) 20, 644, 980, 1092
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 1 cut(s) 685
BspLI GGNNCC 5 cut(s) 18, 546, 786, 834, 945
BspMAI CTGCAG 2 cut(s) 435, 658
BspMI ACCTGC 1 cut(s) 647
BspT104I TTCGAA 1 cut(s) 1247
BsrDI GCAATG 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 2 cut(s) 788, 824
BssAI RCCGGY 1 cut(s) 610
BssECI CCNNGG 4 cut(s) 95, 96, 200, 793
BssMI GATC 1 cut(s) 372
BssNAI GTATAC 1 cut(s) 386
BssNI GRCGYC 1 cut(s) 1167
Bst1107I GTATAC 1 cut(s) 386
Bst2UI CCWGG 2 cut(s) 97, 933
Bst4CI ACNGT 6 cut(s) 122, 158, 280, 722, 1160, 1271
Bst6I CTCTTC 2 cut(s) 130, 726
BstACI GRCGYC 1 cut(s) 1167
BstAPI GCANNNNNTGC 1 cut(s) 680
BstBI TTCGAA 1 cut(s) 1247
BstC8I GCNNGC 6 cut(s) 431, 555, 978, 990, 1020, 1223
BstDEI CTNAG 2 cut(s) 23, 693
BstDSI CCRYGG 2 cut(s) 200, 793
BstF5I GGATG 3 cut(s) 106, 574, 583
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 2 cut(s) 743, 1047
BstMBI GATC 1 cut(s) 372
BstMCI CGRYCG 1 cut(s) 1234
BstMWI GCNNNNNNNGC 7 cut(s) 336, 653, 680, 767, 965, 1112, 1259
BstNI CCWGG 2 cut(s) 97, 933
BstNSI RCATGY 1 cut(s) 1153
BstSCI CCNGG 2 cut(s) 95, 931
BstSFI CTRYAG 2 cut(s) 431, 654
BstV1I GCAGC 5 cut(s) 754, 875, 1082, 1189, 1240
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 429
BtgI CCRYGG 2 cut(s) 200, 793
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 3 cut(s) 106, 574, 583
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 6 cut(s) 431, 555, 978, 990, 1020, 1223
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 2 cut(s) 416, 833
CseI GACGC 1 cut(s) 1156
Csp6I GTAC 2 cut(s) 452, 723
CspAI ACCGGT 1 cut(s) 610
CviAII CATG 3 cut(s) 883, 1004, 1150
CviQI GTAC 2 cut(s) 452, 723
DdeI CTNAG 2 cut(s) 23, 693
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
Eam1104I CTCTTC 2 cut(s) 130, 726
EarI CTCTTC 2 cut(s) 130, 726
Eco24I GRGCYC 1 cut(s) 604
Eco32I GATATC 1 cut(s) 749
Eco47I GGWCC 2 cut(s) 416, 833
Eco57I CTGAAG 2 cut(s) 249, 1101
EcoO109I RGGNCCY 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 95, 931
EcoRV GATATC 1 cut(s) 749
EcoT38I GRGCYC 1 cut(s) 604
FaeI CATG 3 cut(s) 886, 1007, 1153
FaqI GGGAC 4 cut(s) 129, 301, 846, 1221
FatI CATG 3 cut(s) 882, 1003, 1149
FauNDI CATATG 2 cut(s) 240, 1102
FblI GTMKAC 3 cut(s) 385, 1068, 1182
Fnu4HI GCNGC 8 cut(s) 20, 645, 768, 889, 1093, 1096, 1203, 1254
FokI GGATG 3 cut(s) 113, 581, 590
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 8 cut(s) 20, 645, 768, 889, 1093, 1096, 1203, 1254
GluI GCNGC 8 cut(s) 20, 645, 768, 889, 1093, 1096, 1203, 1254
GsaI CCCAGC 1 cut(s) 553
GsuI CTGGAG 2 cut(s) 1031, 1227
HaeIII GGCC 1 cut(s) 429
HapII CCGG 3 cut(s) 81, 611, 1083
HgaI GACGC 1 cut(s) 1156
Hin1I GRCGYC 1 cut(s) 1167
Hin1II CATG 3 cut(s) 886, 1007, 1153
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HindIII AAGCTT 3 cut(s) 25, 178, 1193
HinfI GANTC 8 cut(s) 64, 191, 299, 625, 695, 736, 921, 1070
HpaII CCGG 3 cut(s) 81, 611, 1083
HphI GGTGA 2 cut(s) 525, 920
Hpy166II GTNNAC 6 cut(s) 386, 997, 1069, 1147, 1171, 1183
Hpy188I TCNGA 6 cut(s) 69, 219, 229, 483, 618, 694
Hpy188III TCNNGA 4 cut(s) 498, 742, 1048, 1119
Hpy8I GTNNAC 6 cut(s) 386, 997, 1069, 1147, 1171, 1183
Hpy99I CGWCG 2 cut(s) 358, 1275
HpyAV CCTTC 5 cut(s) 125, 201, 224, 261, 1243
HpyCH4III ACNGT 6 cut(s) 122, 158, 280, 722, 1160, 1271
HpyCH4IV ACGT 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 7 cut(s) 336, 653, 680, 767, 965, 1112, 1259
HpyF3I CTNAG 2 cut(s) 23, 693
HpySE526I ACGT 1 cut(s) 353
Hsp92I GRCGYC 1 cut(s) 1167
Hsp92II CATG 3 cut(s) 886, 1007, 1153
Kzo9I GATC 1 cut(s) 372
LmnI GCTCC 4 cut(s) 16, 316, 775, 1112
Lsp1109I GCAGC 5 cut(s) 754, 875, 1082, 1189, 1240
LweI GCATC 5 cut(s) 550, 568, 692, 1234, 1276
MaeII ACGT 1 cut(s) 353
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 6 cut(s) 69, 147, 412, 486, 743, 1148
MfeI CAATTG 2 cut(s) 915, 1077
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 53, 604
MluCI AATT 4 cut(s) 221, 477, 915, 1077
MlyI GAGTC 4 cut(s) 200, 704, 745, 1064
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 7 cut(s) 7, 160, 508, 823, 856, 1274, 1300
MroXI GAANNNNTTC 2 cut(s) 271, 477
MseI TTAA 3 cut(s) 293, 312, 717
MslI CAYNNNNRTG 5 cut(s) 199, 538, 1002, 1037, 1176
MspA1I CMGCKG 2 cut(s) 980, 1283
MspI CCGG 3 cut(s) 81, 611, 1083
MspR9I CCNGG 2 cut(s) 97, 933
MunI CAATTG 2 cut(s) 915, 1077
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 2 cut(s) 97, 933
MwoI GCNNNNNNNGC 7 cut(s) 336, 653, 680, 767, 965, 1112, 1259
NdeI CATATG 2 cut(s) 240, 1102
NdeII GATC 1 cut(s) 372
NlaIII CATG 3 cut(s) 886, 1007, 1153
NlaIV GGNNCC 5 cut(s) 18, 546, 786, 834, 945
NspI RCATGY 1 cut(s) 1153
NspV TTCGAA 1 cut(s) 1247
OliI CACNNNNGTG 1 cut(s) 538
PaqCI CACCTGC 1 cut(s) 647
PasI CCCWGGG 1 cut(s) 96
PciI ACATGT 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 1164
PctI GAATGC 1 cut(s) 778
PdmI GAANNNNTTC 2 cut(s) 271, 477
PfeI GAWTC 4 cut(s) 64, 299, 625, 921
PflMI CCANNNNNTGG 2 cut(s) 425, 794
PinAI ACCGGT 1 cut(s) 610
PkrI GCNGC 8 cut(s) 21, 646, 769, 890, 1094, 1097, 1204, 1255
PleI GAGTC 4 cut(s) 199, 703, 744, 1064
PpsI GAGTC 4 cut(s) 199, 703, 744, 1064
PpuMI RGGWCCY 1 cut(s) 833
PscI ACATGT 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 833
Psp6I CCWGG 2 cut(s) 95, 931
PspFI CCCAGC 1 cut(s) 549
PspGI CCWGG 2 cut(s) 95, 931
PspN4I GGNNCC 5 cut(s) 18, 546, 786, 834, 945
PspPI GGNCC 2 cut(s) 416, 833
PspPPI RGGWCCY 1 cut(s) 833
PstI CTGCAG 2 cut(s) 435, 658
PsuI RGATCY 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 1283
RsaI GTAC 2 cut(s) 453, 724
RsaNI GTAC 2 cut(s) 452, 723
RseI CAYNNNNRTG 5 cut(s) 199, 538, 1002, 1037, 1176
SalI GTCGAC 1 cut(s) 1181
SaqAI TTAA 3 cut(s) 293, 312, 717
SatI GCNGC 8 cut(s) 20, 645, 768, 889, 1093, 1096, 1203, 1254
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 2 cut(s) 416, 833
SchI GAGTC 4 cut(s) 200, 704, 745, 1064
ScrFI CCNGG 2 cut(s) 97, 933
SduI GDGCHC 2 cut(s) 53, 604
SfaNI GCATC 5 cut(s) 550, 568, 692, 1234, 1276
SfcI CTRYAG 2 cut(s) 431, 654
SfuI TTCGAA 1 cut(s) 1247
SinI GGWCC 2 cut(s) 416, 833
SmiMI CAYNNNNRTG 5 cut(s) 199, 538, 1002, 1037, 1176
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
Sse9I AATT 4 cut(s) 221, 477, 915, 1077
SsiI CCGC 4 cut(s) 20, 644, 980, 1092
SspI AATATT 2 cut(s) 253, 715
StyD4I CCNGG 2 cut(s) 95, 931
TaaI ACNGT 6 cut(s) 122, 158, 280, 722, 1160, 1271
TaiI ACGT 1 cut(s) 356
TaqI TCGA 6 cut(s) 5, 513, 604, 729, 1182, 1247
TaqII GACCGA 1 cut(s) 1220
TasI AATT 4 cut(s) 221, 477, 915, 1077
TauI GCSGC 3 cut(s) 22, 647, 1095
TfiI GAWTC 4 cut(s) 64, 299, 625, 921
Tru1I TTAA 3 cut(s) 293, 312, 717
Tru9I TTAA 3 cut(s) 293, 312, 717
TscAI CASTG 1 cut(s) 769
TseI GCWGC 5 cut(s) 767, 888, 1095, 1202, 1253
TspDTI ATGAA 1 cut(s) 1204
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 1 cut(s) 769
Van91I CCANNNNNTGG 2 cut(s) 425, 794
VpaK11BI GGWCC 2 cut(s) 416, 833
XceI RCATGY 1 cut(s) 1153
XcmI CCANNNNNNNNNTGG 3 cut(s) 1010, 1138, 1183
XmiI GTMKAC 3 cut(s) 385, 1068, 1182
XmnI GAANNNNTTC 2 cut(s) 271, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.