Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

12729779 .. 12741278

Gene Structure 11500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1094600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTTGGTTTGCATAAGTTGTCAAGACAAACGAGGAATGTGAAGGGAACACTAGCAGGATTCGGTGGGGGGAATGTTGAGGCTTCCTATTTGTCAAGTCGTAATTTCAGCACTCAGCATCGGGTTTTAAAAGACATTCCGGAATTTGTAAAGATTGTAGAAGTTGGTCCGAGGGATGGACTGCAGAATGAGAAGCACATTGTTCCTACCGCTGTCAAGGTTCAATTGATTCAAATGCTTGTTTCTTCTGGCTTGCCTGTTGTCGAGCCTACAAGTTTTGTCTCCCCAAAATGGGTTCCTCAGCTGGTAGATGCAAAAGATGTAATGGCCGCTATTCGGAATATTGAAGGTGCTAGATTTCCCGTCCTAACCCCTAATCTTAAAGGATTTGAGACAGCTGTTGCTGCTGGTGCAAAGGAAGTTGCCATATTTGCCTCAGCTTCTGAATCTTTCTCAAAATCAAATATAAATTGCAGTATTGAAGATAGTCTCGTTCGATATAGTGACGTTTCTATTGCTGCCAGAAAGCTTTCAATTCCTGTTCGTGGATATATATCGTGTGTTGTGGGGTGTCCGGTGGAAGGAAAGATATCCCCATCACAAGTAGCATATGTGGCGAAAGAACTTTATGATATGGGTTGCTCAGAAATTTCTCTTGGTGATACAATTGGTGTCGGTACTCCAGGTACTGTCATTCCAATGCTTGAAGCTGTTATTGACGTGGTCCCGACTGACAAGCTTGCTGTCCATTTTCACGATACTTATGGGCAAGCTCTTTCAAACATACTAGCGTCACTCCAGATAGGAATCAGCACAGTGGATTCTTCAGTATCAGGTCTTGGGGGTTGTCCGTATGCTAAGGGAGCTTCCGGAAATGTTGCCACGGAAGATGTTGTGTACATGCTTAATGGACTTGGAGTGAAGACCAATGTAGATCTTAAAAAGCTCATGTTGGCTGGGGACTATATCAGTAAGCACTTGGGGCGCTCATCTGGTTCAAAGACGGCAGTTGCCTTGAGTAAAGTCGCAGCTCCTGCCTCAAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

350

Amino Acids

36.71

Weight (kDa)

8.67

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	50 - 321	1.2e-54	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	139, 869
AciI	CCGC	2 cut(s)	210, 330
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	143, 648
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	3 cut(s)	679, 688, 899
AfiI	CCNNNNNNNGG	6 cut(s)	176, 291, 292, 336, 545, 581
AgsI	TTSAA	8 cut(s)	224, 233, 347, 482, 534, 707, 780, 999
AjiI	CACGTC	1 cut(s)	721
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
Alw26I	GTCTC	3 cut(s)	286, 386, 494
AlwNI	CAGNNNCTG	3 cut(s)	443, 689, 1034
Aor13HI	TCCGGA	2 cut(s)	139, 869
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	404, 518, 1028
ApoI	RAATTY	2 cut(s)	143, 648
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	987
AspS9I	GGNCC	2 cut(s)	167, 724
AsuHPI	GGTGA	1 cut(s)	671
AvaII	GGWCC	2 cut(s)	167, 724
BbsI	GAAGAC	1 cut(s)	929
BbvCI	CCTCAGC	2 cut(s)	300, 436
BbvI	GCAGC	3 cut(s)	391, 505, 1040
BccI	CCATC	2 cut(s)	170, 604
BceAI	ACGGC	1 cut(s)	1020
BciT130I	CCWGG	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	286, 386, 494
BfaI	CTAG	3 cut(s)	53, 354, 788
BfmI	CTRYAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	988
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	4 cut(s)	330, 405, 519, 1029
BlsI	GCNGC	4 cut(s)	331, 406, 520, 1030
Bme1390I	CCNGG	1 cut(s)	684
Bme18I	GGWCC	2 cut(s)	167, 724
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	167, 724
BmiI	GGNNCC	2 cut(s)	297, 726
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	127, 301
BpiI	GAAGAC	1 cut(s)	929
BpmI	CTGGAG	2 cut(s)	666, 782
Bpu10I	CCTNAGC	3 cut(s)	300, 436, 858
BpuEI	CTTGAG	1 cut(s)	1036
BsaBI	GATNNNNATC	2 cut(s)	553, 806
BsaJI	CCNNGG	2 cut(s)	170, 882
BsaWI	WCCGGW	3 cut(s)	139, 574, 869
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 291, 292, 336, 545, 581
Bse8I	GATNNNNATC	2 cut(s)	553, 806
BseAI	TCCGGA	2 cut(s)	139, 869
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	170, 882
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	2 cut(s)	553, 806
BseLI	CCNNNNNNNGG	6 cut(s)	176, 291, 292, 336, 545, 581
BseMII	CTCAG	4 cut(s)	128, 314, 450, 657
BseXI	GCAGC	3 cut(s)	391, 505, 1040
BseYI	CCCAGC	1 cut(s)	956
BshFI	GGCC	1 cut(s)	329
BsiSI	CCGG	3 cut(s)	140, 575, 870
BslFI	GGGAC	2 cut(s)	710, 974
BslI	CCNNNNNNNGG	6 cut(s)	176, 291, 292, 336, 545, 581
BsmAI	GTCTC	3 cut(s)	286, 386, 494
BsmFI	GGGAC	2 cut(s)	710, 974
BsnI	GGCC	1 cut(s)	329
Bsp13I	TCCGGA	2 cut(s)	139, 869
Bsp1407I	TGTACA	1 cut(s)	897
Bsp143I	GATC	1 cut(s)	934
BspACI	CCGC	2 cut(s)	210, 330
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	4 cut(s)	127, 313, 449, 656
BspEI	TCCGGA	2 cut(s)	139, 869
BspLI	GGNNCC	2 cut(s)	297, 726
BspMAI	CTGCAG	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	897
BssECI	CCNNGG	2 cut(s)	170, 882
BssMI	GATC	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	691, 817
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	897
BstC8I	GCNNGC	3 cut(s)	254, 741, 771
BstDEI	CTNAG	5 cut(s)	114, 300, 436, 643, 858
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	988
BstHHI	GCGC	1 cut(s)	987
BstKTI	GATC	1 cut(s)	937
BstMAI	GTCTC	3 cut(s)	286, 386, 494
BstMBI	GATC	1 cut(s)	934
BstMWI	GCNNNNNNNGC	7 cut(s)	404, 410, 431, 614, 863, 982, 1034
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	391, 505, 1040
BstV2I	GAAGAC	1 cut(s)	929
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	882
BtrI	CACGTC	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	822
Cac8I	GCNNGC	3 cut(s)	254, 741, 771
CaiI	CAGNNNCTG	3 cut(s)	443, 689, 1034
CfoI	GCGC	1 cut(s)	987
Cfr13I	GGNCC	2 cut(s)	167, 724
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	3 cut(s)	678, 687, 898
CviAII	CATG	2 cut(s)	901, 949
CviQI	GTAC	3 cut(s)	678, 687, 898
DdeI	CTNAG	5 cut(s)	114, 300, 436, 643, 858
DpnI	GATC	1 cut(s)	936
DpnII	GATC	1 cut(s)	934
DraI	TTTAAA	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	591
Eco47I	GGWCC	2 cut(s)	167, 724
Eco57I	CTGAAG	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	682
EcoRV	GATATC	1 cut(s)	591
FaeI	CATG	2 cut(s)	904, 952
FaqI	GGGAC	2 cut(s)	710, 974
FatI	CATG	2 cut(s)	900, 948
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	4 cut(s)	330, 405, 519, 1029
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	4 cut(s)	330, 405, 519, 1029
FspBI	CTAG	3 cut(s)	53, 354, 788
GlaI	GCGC	1 cut(s)	986
GluI	GCNGC	4 cut(s)	330, 405, 519, 1029
GsaI	CCCAGC	1 cut(s)	960
GsuI	CTGGAG	2 cut(s)	666, 782
HaeII	RGCGCY	1 cut(s)	988
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	3 cut(s)	140, 575, 870
HgaI	GACGC	1 cut(s)	780
HhaI	GCGC	1 cut(s)	987
Hin1II	CATG	2 cut(s)	904, 952
Hin6I	GCGC	1 cut(s)	985
HinP1I	GCGC	1 cut(s)	985
HindIII	AAGCTT	2 cut(s)	527, 737
HinfI	GANTC	5 cut(s)	60, 229, 446, 807, 821
HpaII	CCGG	3 cut(s)	140, 575, 870
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	4 cut(s)	171, 339, 445, 646
Hpy188III	TCNNGA	6 cut(s)	24, 140, 727, 755, 799, 870
Hpy8I	GTNNAC	1 cut(s)	898
HpyAV	CCTTC	3 cut(s)	37, 341, 575
HpyCH4III	ACNGT	2 cut(s)	691, 817
HpyCH4IV	ACGT	2 cut(s)	507, 720
HpyCH4V	TGCA	5 cut(s)	13, 184, 314, 413, 474
HpyF10VI	GCNNNNNNNGC	7 cut(s)	404, 410, 431, 614, 863, 982, 1034
HpyF3I	CTNAG	5 cut(s)	114, 300, 436, 643, 858
HpySE526I	ACGT	2 cut(s)	507, 720
Hsp92II	CATG	2 cut(s)	904, 952
HspAI	GCGC	1 cut(s)	985
Kpn2I	TCCGGA	2 cut(s)	139, 869
Kzo9I	GATC	1 cut(s)	934
LmnI	GCTCC	2 cut(s)	863, 1036
Lsp1109I	GCAGC	3 cut(s)	391, 505, 1040
LweI	GCATC	2 cut(s)	127, 301
MaeI	CTAG	3 cut(s)	53, 354, 788
MaeII	ACGT	2 cut(s)	507, 720
MaeIII	GTNAC	2 cut(s)	503, 792
MalI	GATC	1 cut(s)	936
MboI	GATC	1 cut(s)	934
MboII	GAAGA	5 cut(s)	237, 494, 816, 899, 934
MfeI	CAATTG	2 cut(s)	224, 666
MflI	RGATCY	1 cut(s)	934
MluCI	AATT	7 cut(s)	103, 143, 224, 469, 534, 648, 666
MnlI	CCTC	6 cut(s)	27, 73, 165, 309, 445, 1048
MroI	TCCGGA	2 cut(s)	139, 869
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	4 cut(s)	128, 381, 906, 939
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	3 cut(s)	212, 304, 398
MspI	CCGG	3 cut(s)	140, 575, 870
MspR9I	CCNGG	1 cut(s)	684
MunI	CAATTG	2 cut(s)	224, 666
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	7 cut(s)	404, 410, 431, 614, 863, 982, 1034
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	1 cut(s)	934
NlaIII	CATG	2 cut(s)	904, 952
NlaIV	GGNNCC	2 cut(s)	297, 726
NmuCI	GTSAC	2 cut(s)	503, 792
NspI	RCATGY	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	5 cut(s)	60, 229, 446, 807, 821
PflFI	GACNNNGTC	1 cut(s)	722
PkrI	GCNGC	4 cut(s)	331, 406, 520, 1030
Psp6I	CCWGG	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	956
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	2 cut(s)	297, 726
PspPI	GGNCC	2 cut(s)	167, 724
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	3 cut(s)	443, 689, 1034
PsuI	RGATCY	1 cut(s)	934
PsyI	GACNNNGTC	1 cut(s)	722
PvuII	CAGCTG	2 cut(s)	304, 398
RsaI	GTAC	3 cut(s)	679, 688, 899
RsaNI	GTAC	3 cut(s)	678, 687, 898
RseI	CAYNNNNRTG	1 cut(s)	698
SaqAI	TTAA	4 cut(s)	128, 381, 906, 939
SatI	GCNGC	4 cut(s)	330, 405, 519, 1029
Sau3AI	GATC	1 cut(s)	934
Sau96I	GGNCC	2 cut(s)	167, 724
ScrFI	CCNGG	1 cut(s)	684
SfaNI	GCATC	2 cut(s)	127, 301
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	2 cut(s)	167, 724
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	1015
SmoI	CTYRAG	1 cut(s)	1015
Sse9I	AATT	7 cut(s)	103, 143, 224, 469, 534, 648, 666
SsiI	CCGC	2 cut(s)	210, 330
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	3 cut(s)	53, 354, 788
StyD4I	CCNGG	1 cut(s)	682
TaaI	ACNGT	2 cut(s)	691, 817
TaiI	ACGT	2 cut(s)	510, 723
TaqI	TCGA	2 cut(s)	264, 496
TasI	AATT	7 cut(s)	103, 143, 224, 469, 534, 648, 666
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	5 cut(s)	60, 229, 446, 807, 821
Tru1I	TTAA	4 cut(s)	128, 381, 906, 939
Tru9I	TTAA	4 cut(s)	128, 381, 906, 939
TscAI	CASTG	1 cut(s)	822
TseFI	GTSAC	2 cut(s)	503, 792
TseI	GCWGC	3 cut(s)	404, 518, 1028
Tsp45I	GTSAC	2 cut(s)	503, 792
TspGWI	ACGGA	2 cut(s)	840, 899
TspRI	CASTG	1 cut(s)	822
Tth111I	GACNNNGTC	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	167, 724
XapI	RAATTY	2 cut(s)	143, 648
XceI	RCATGY	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	3 cut(s)	53, 354, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.