Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012561

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

311735 .. 313377

Gene Structure 1643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12561g00230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCGAGCTTGGAGGAGCCACTTGGTTTTGACAAGTTGCCTAGCATGGGTACCATGGATCGGATTCAGAGGTTCTCGTCTACTGCTTGCAGATCTAGATCAGATGATGCGGCAATGGGAAACTGTTGGATTGAAGGAAGAAGTTGCAGCACATCCAATAGCTGCGACGAAGATTATGATGAATATGCAAGAGAGGGCTTTCCATGGAAAAGACATACAAGAGACAGGGACTTGTCCCATGGTGACTCCTTCAATCAACGGACCTTGAGCTTAGGCAGGAATCACAGGGTATTTGGAAATGTGTGCGATTCATGGTATTTGTCAGATCAATATAACGCCAAGTGCAATGACAAAGATATAACAAATAAGTTTTTGAAAGGTGTGCCAAAGTTTGTGAAGATAGTAGAAGTAGGTCCAAGGGATGGACTACAAAATGAAAAGAATATTATATCTGCATCCGTAAAGATTGAACTGATTCAGAGACTGGTATCTTGTGGGTTGTCTGTTGTTGAGGCTACGAGTTTTGTATCGCCCAAATGGGTTCCTCAGCTAGCAGATGCAAAGGACGTAATGGAAGCAGTTCACAATCTGGAGGGTGCTAGATTGCCTGTACTGACACCCAATTTAAAAGGGTTTGAAGCAGCTGTTGCAGCAGGTGCTCAAGATATAGCAGTATTTGCATCAGCTTCTGAATCATTTTCAAAGTCAAACATCAATTGTAGCATTGAAGAAAGCCTTGTTCGTTATCGTGCTGTAACTCGTGCTGCAAAAGAGCTTTCAATTCCTGTACGAGGGTATGTTCTCTATCTCATTTTCACAGAATGTTTACGAAATAAACTAAGCACGACAGCTACCTCCTTATCCTTTCAAATCATCTTATGGGTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

298

Amino Acids

33.11

Weight (kDa)

8.03

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	132 - 264	5.8e-21	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	644
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	52, 612, 789
AfiI	CCNNNNNNNGG	4 cut(s)	47, 60, 422, 791
AgsI	TTSAA	9 cut(s)	134, 253, 376, 470, 638, 702, 728, 780, 869
AluBI	AGCT	8 cut(s)	9, 162, 270, 550, 644, 686, 775, 851
AluI	AGCT	8 cut(s)	9, 162, 270, 550, 644, 686, 775, 851
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	2 cut(s)	216, 475
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	2 cut(s)	484, 689
ApeKI	GCWGC	5 cut(s)	147, 162, 641, 650, 764
Asp700I	GAANNNNTTC	2 cut(s)	474, 579
Asp718I	GGTACC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	261, 413
AsuHPI	GGTGA	1 cut(s)	254
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	261, 413
BanI	GGYRCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	661
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	5 cut(s)	149, 159, 653, 662, 751
BccI	CCATC	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	216, 475
BfaI	CTAG	4 cut(s)	42, 96, 551, 600
BfuAI	ACCTGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	6 cut(s)	111, 148, 163, 642, 651, 765
BlsI	GCNGC	6 cut(s)	112, 149, 164, 643, 652, 766
Bme18I	GGWCC	2 cut(s)	261, 413
BmgT120I	GGNCC	2 cut(s)	261, 413
BmiI	GGNNCC	3 cut(s)	18, 52, 543
BmsI	GCATC	4 cut(s)	97, 464, 547, 689
BmtI	GCTAGC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	2 cut(s)	271, 546
BpuEI	CTTGAG	2 cut(s)	286, 645
BsaBI	GATNNNNATC	1 cut(s)	97
BsaJI	CCNNGG	4 cut(s)	54, 203, 238, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 60, 422, 791
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	2 cut(s)	120, 352
Bse8I	GATNNNNATC	1 cut(s)	97
BseDI	CCNNGG	4 cut(s)	54, 203, 238, 416
BseGI	GGATG	3 cut(s)	152, 427, 455
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	4 cut(s)	47, 60, 422, 791
BseMI	GCAATG	2 cut(s)	120, 352
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	5 cut(s)	149, 159, 653, 662, 751
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	661
BslFI	GGGAC	2 cut(s)	220, 242
BslI	CCNNNNNNNGG	4 cut(s)	47, 60, 422, 791
BsmAI	GTCTC	2 cut(s)	216, 475
BsmFI	GGGAC	2 cut(s)	220, 242
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	58, 92, 98, 325
Bsp19I	CCATGG	3 cut(s)	54, 203, 238
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	18, 52, 543
BspMI	ACCTGC	1 cut(s)	644
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	50
BsrDI	GCAATG	2 cut(s)	120, 352
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	4 cut(s)	54, 203, 238, 416
BssMI	GATC	4 cut(s)	58, 92, 98, 325
BssSI	CACGAG	1 cut(s)	759
BssT1I	CCWWGG	4 cut(s)	54, 203, 238, 416
Bst2BI	CACGAG	1 cut(s)	759
Bst4CI	ACNGT	1 cut(s)	125
BstAPI	GCANNNNNTGC	3 cut(s)	647, 656, 677
BstC8I	GCNNGC	2 cut(s)	88, 552
BstDEI	CTNAG	3 cut(s)	271, 546, 839
BstDSI	CCRYGG	3 cut(s)	54, 203, 238
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	3 cut(s)	152, 427, 455
BstKTI	GATC	4 cut(s)	61, 95, 101, 328
BstMAI	GTCTC	2 cut(s)	216, 475
BstMBI	GATC	4 cut(s)	58, 92, 98, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	647, 650, 656, 677
BstV1I	GCAGC	5 cut(s)	149, 159, 653, 662, 751
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BtgI	CCRYGG	3 cut(s)	54, 203, 238
BtsCI	GGATG	3 cut(s)	152, 427, 455
BveI	ACCTGC	1 cut(s)	644
Cac8I	GCNNGC	2 cut(s)	88, 552
CaiI	CAGNNNCTG	2 cut(s)	484, 689
Cfr13I	GGNCC	2 cut(s)	261, 413
Csp6I	GTAC	3 cut(s)	51, 611, 788
CviAII	CATG	5 cut(s)	46, 55, 204, 239, 312
CviQI	GTAC	3 cut(s)	51, 611, 788
DdeI	CTNAG	3 cut(s)	271, 546, 839
DpnI	GATC	4 cut(s)	60, 94, 100, 327
DpnII	GATC	4 cut(s)	58, 92, 98, 325
DraI	TTTAAA	1 cut(s)	627
Eco130I	CCWWGG	4 cut(s)	54, 203, 238, 416
Eco47I	GGWCC	2 cut(s)	261, 413
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoT14I	CCWWGG	4 cut(s)	54, 203, 238, 416
ErhI	CCWWGG	4 cut(s)	54, 203, 238, 416
FaeI	CATG	5 cut(s)	49, 58, 207, 242, 315
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	2 cut(s)	220, 242
FatI	CATG	5 cut(s)	45, 54, 203, 238, 311
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	6 cut(s)	111, 148, 163, 642, 651, 765
FokI	GGATG	3 cut(s)	139, 434, 442
Fsp4HI	GCNGC	6 cut(s)	111, 148, 163, 642, 651, 765
FspBI	CTAG	4 cut(s)	42, 96, 551, 600
GluI	GCNGC	6 cut(s)	111, 148, 163, 642, 651, 765
GsuI	CTGGAG	1 cut(s)	611
Hin1II	CATG	5 cut(s)	49, 58, 207, 242, 315
HinfI	GANTC	6 cut(s)	64, 245, 280, 308, 475, 692
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	81, 583, 827
Hpy188I	TCNGA	6 cut(s)	63, 69, 103, 325, 480, 691
Hpy188III	TCNNGA	4 cut(s)	96, 590, 662, 886
Hpy8I	GTNNAC	3 cut(s)	81, 583, 827
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	128, 259
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	9 cut(s)	90, 147, 188, 345, 455, 560, 650, 680, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	647, 650, 656, 677
HpyF3I	CTNAG	3 cut(s)	271, 546, 839
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	5 cut(s)	49, 58, 207, 242, 315
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	58, 92, 98, 325
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	8 cut(s)	211, 262, 271, 470, 575, 621, 639, 798
Lsp1109I	GCAGC	5 cut(s)	149, 159, 653, 662, 751
LweI	GCATC	4 cut(s)	97, 464, 547, 689
MaeI	CTAG	4 cut(s)	42, 96, 551, 600
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	242, 754
MalI	GATC	4 cut(s)	60, 94, 100, 327
MboI	GATC	4 cut(s)	58, 92, 98, 325
MboII	GAAGA	4 cut(s)	150, 182, 409, 740
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	3 cut(s)	622, 715, 780
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	8 cut(s)	7, 63, 187, 505, 555, 586, 785, 865
MroXI	GAANNNNTTC	2 cut(s)	474, 579
MseI	TTAA	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	644
MunI	CAATTG	1 cut(s)	715
MwoI	GCNNNNNNNGC	4 cut(s)	647, 650, 656, 677
NcoI	CCATGG	3 cut(s)	54, 203, 238
NdeII	GATC	4 cut(s)	58, 92, 98, 325
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	49, 58, 207, 242, 315
NlaIV	GGNNCC	3 cut(s)	18, 52, 543
NmuCI	GTSAC	1 cut(s)	242
PaqCI	CACCTGC	1 cut(s)	644
PdmI	GAANNNNTTC	2 cut(s)	474, 579
PfeI	GAWTC	5 cut(s)	64, 280, 308, 475, 692
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	6 cut(s)	112, 149, 164, 643, 652, 766
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	18, 52, 543
PspPI	GGNCC	2 cut(s)	261, 413
PstNI	CAGNNNCTG	2 cut(s)	484, 689
PsuI	RGATCY	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	3 cut(s)	52, 612, 789
RsaNI	GTAC	3 cut(s)	51, 611, 788
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	6 cut(s)	111, 148, 163, 642, 651, 765
Sau3AI	GATC	4 cut(s)	58, 92, 98, 325
Sau96I	GGNCC	2 cut(s)	261, 413
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	4 cut(s)	97, 464, 547, 689
SinI	GGWCC	2 cut(s)	261, 413
SmlI	CTYRAG	2 cut(s)	265, 660
SmoI	CTYRAG	2 cut(s)	265, 660
Sse9I	AATT	3 cut(s)	622, 715, 780
SsiI	CCGC	1 cut(s)	110
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	4 cut(s)	42, 96, 551, 600
StyI	CCWWGG	4 cut(s)	54, 203, 238, 416
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	622, 715, 780
TatI	WGTACW	1 cut(s)	610
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	5 cut(s)	64, 280, 308, 475, 692
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	5 cut(s)	147, 162, 641, 650, 764
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	195, 300, 450
TspGWI	ACGGA	2 cut(s)	274, 448
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	261, 413
XagI	CCTNNNNNAGG	1 cut(s)	789
XbaI	TCTAGA	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	474, 579
XspI	CTAG	4 cut(s)	42, 96, 551, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.