Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

24037817 .. 24041815

Gene Structure 3999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1183500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGAAACTGTTGGATTGAAGGAAGAAGTTGCAGCACATCCAATAGCTGCGACGAAGATTATGATGAATATGCAAGAGAGGGCTTTCCATGGAAAAGACATACAAGAGACAGGGACTTGTCCCATGGTGACTCCTTCAATCAACGGACCTTGAGCTTAGGCAGGAATCACAGGGTATTTGGAAATGTGTGTGATTCATGGTATTTGTCAGATCAATATAACGCCAAGTGCAATGACAAAGATATAACAAATAAGTTTTTGAAAGGCATACCAAAGTTTGTGAAGATAGTAGAAGTAGGTCCAAGGGATGGACTACAAAATGAAAAGAACACTATATCTGCATCCGTAAAGATTGAACTGATTCAGAGACTGGTATCTTGTGGGTTGTCTGTTGTTGAGGCTACGAGTTTTGTATCGCCCAAATGGGTTCCTCAGCTAGCAGACGCAAAGGACGTAATGGAAGCAGTTCACAATCTGGAGGGTGCTAGATTGCCTGTACTGACACCCAATTTAAAAGGGTTTGAAGCAGCTGTTGCAGCAGGTGCTAAAGATATAGCAGTATTTGCATCAGCTTCTGAATCATTTTCAAAGTCAAACATCAATTGTAGCATTGAAGAAAGTCTTGTTCGTTATCGTGCTGTAACTCGTGCTGCAAAAGAGCTTACAATTCCTGTACGAGGGTATGTCTCGTGCGTCGTTGGATGTCCAGTGGAGGGAGCAATTCCTCCATCAAGAGTGGCATATGTAGCAAAAGAACTTTACAACATGGGCTGCTTTGAAATTTCTCTTGGTGACACAATTGGTGTTGGTACACCTGGGACGGTTGTTCCCATGCTGGAAGCTGTAATGGCTGCTGTTCCTGTTGAAAAGCTTGCTGTTCACTTCCATGACACCTATGGGCAATCTCTCTCAAACATTCTAGTGTCTCTTCAAATGGGGATTAGCACAGTGGATTCCTCTATTGCGGGTTTAGGTGGGTGTCCGTATGCTAAAGGAGCTTCAGGTAACGTCGCCACTGAAGATGTTGTATACATGCTTTATGGACTCGGTGTGAAAACCAATGTGGATCTGGCGAAGCTCTTGGTGACCGGGGATTTCATCAGCAAGCATTTGGGTCGCCCGTCTGGCTCAAAGACTGCCGTTGCCTTGAGTCGAGCCACAGCTGACGCCTCTAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

394

Amino Acids

42.2

Weight (kDa)

6.66

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	94 - 367	7.2e-59	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	1029
AciI	CCGC	1 cut(s)	965
AclWI	GGATC	1 cut(s)	1074
AcsI	RAATTY	1 cut(s)	780
AcuI	CTGAAG	2 cut(s)	984, 1038
AcyI	GRCGYC	1 cut(s)	1167
AfaI	GTAC	3 cut(s)	498, 675, 811
AfiI	CCNNNNNNNGG	3 cut(s)	308, 677, 713
AjnI	CCWGG	1 cut(s)	814
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
Alw26I	GTCTC	4 cut(s)	102, 361, 691, 930
AlwI	GGATC	1 cut(s)	1074
AlwNI	CAGNNNCTG	2 cut(s)	370, 575
ApeKI	GCWGC	7 cut(s)	33, 48, 527, 536, 650, 771, 851
ApoI	RAATTY	1 cut(s)	780
Asp700I	GAANNNNTTC	2 cut(s)	360, 465
AspS9I	GGNCC	2 cut(s)	147, 299
AsuC2I	CCSGG	1 cut(s)	1090
AsuHPI	GGTGA	3 cut(s)	140, 803, 1096
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	147, 299
BauI	CACGAG	2 cut(s)	645, 688
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	7 cut(s)	35, 45, 539, 548, 637, 758, 838
BccI	CCATC	2 cut(s)	302, 736
BceAI	ACGGC	1 cut(s)	1124
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	1 cut(s)	816
BcnI	CCSGG	1 cut(s)	1090
BcoDI	GTCTC	4 cut(s)	102, 361, 691, 930
BfaI	CTAG	3 cut(s)	437, 486, 920
BfuAI	ACCTGC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	1125
BisI	GCNGC	7 cut(s)	34, 49, 528, 537, 651, 772, 852
BlsI	GCNGC	7 cut(s)	35, 50, 529, 538, 652, 773, 853
Bme1390I	CCNGG	2 cut(s)	816, 1090
Bme18I	GGWCC	2 cut(s)	147, 299
BmgT120I	GGNCC	2 cut(s)	147, 299
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	816, 1090
BmsI	GCATC	2 cut(s)	350, 575
BmtI	GCTAGC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	497
Bpu10I	CCTNAGC	2 cut(s)	157, 432
BpuEI	CTTGAG	2 cut(s)	172, 1168
BpuMI	CCSGG	1 cut(s)	1090
BsaHI	GRCGYC	1 cut(s)	1167
BsaJI	CCNNGG	5 cut(s)	89, 124, 302, 815, 1089
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 677, 713
Bse1I	ACTGG	2 cut(s)	375, 707
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	5 cut(s)	89, 124, 302, 815, 1089
BseGI	GGATG	4 cut(s)	38, 313, 341, 707
BseLI	CCNNNNNNNGG	3 cut(s)	308, 677, 713
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	375, 707
BseXI	GCAGC	7 cut(s)	35, 45, 539, 548, 637, 758, 838
BsiSI	CCGG	1 cut(s)	1089
BslFI	GGGAC	3 cut(s)	106, 128, 832
BslI	CCNNNNNNNGG	3 cut(s)	308, 677, 713
BsmAI	GTCTC	4 cut(s)	102, 361, 691, 930
BsmFI	GGGAC	3 cut(s)	106, 128, 832
Bsp143I	GATC	2 cut(s)	211, 1066
Bsp19I	CCATGG	2 cut(s)	89, 124
BspACI	CCGC	1 cut(s)	965
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	530
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	1074
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	375, 707
BssECI	CCNNGG	5 cut(s)	89, 124, 302, 815, 1089
BssMI	GATC	2 cut(s)	211, 1066
BssNAI	GTATAC	1 cut(s)	1030
BssNI	GRCGYC	1 cut(s)	1167
BssSI	CACGAG	2 cut(s)	645, 688
BssT1I	CCWWGG	3 cut(s)	89, 124, 302
Bst1107I	GTATAC	1 cut(s)	1030
Bst2BI	CACGAG	2 cut(s)	645, 688
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	3 cut(s)	11, 823, 949
Bst6I	CTCTTC	1 cut(s)	933
BstACI	GRCGYC	1 cut(s)	1167
BstAPI	GCANNNNNTGC	3 cut(s)	533, 542, 563
BstC8I	GCNNGC	3 cut(s)	438, 873, 1106
BstDEI	CTNAG	3 cut(s)	157, 432, 1173
BstDSI	CCRYGG	2 cut(s)	89, 124
BstEII	GGTNACC	1 cut(s)	1084
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	4 cut(s)	38, 313, 341, 707
BstKTI	GATC	2 cut(s)	214, 1069
BstMAI	GTCTC	4 cut(s)	102, 361, 691, 930
BstMBI	GATC	2 cut(s)	211, 1066
BstMWI	GCNNNNNNNGC	8 cut(s)	533, 536, 542, 563, 746, 848, 995, 1125
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	1 cut(s)	1036
BstPI	GGTNACC	1 cut(s)	1084
BstSCI	CCNGG	2 cut(s)	814, 1088
BstV1I	GCAGC	7 cut(s)	35, 45, 539, 548, 637, 758, 838
BstX2I	RGATCY	1 cut(s)	1066
BstYI	RGATCY	1 cut(s)	1066
BstZ17I	GTATAC	1 cut(s)	1030
BtgI	CCRYGG	2 cut(s)	89, 124
BtsCI	GGATG	4 cut(s)	38, 313, 341, 707
BtsIMutI	CAGTG	3 cut(s)	714, 954, 1014
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	3 cut(s)	438, 873, 1106
CaiI	CAGNNNCTG	2 cut(s)	370, 575
Cfr13I	GGNCC	2 cut(s)	147, 299
CseI	GACGC	3 cut(s)	452, 682, 1175
Csp6I	GTAC	3 cut(s)	497, 674, 810
CviAII	CATG	7 cut(s)	90, 125, 198, 766, 832, 887, 1033
CviQI	GTAC	3 cut(s)	497, 674, 810
DdeI	CTNAG	3 cut(s)	157, 432, 1173
DpnI	GATC	2 cut(s)	213, 1068
DpnII	GATC	2 cut(s)	211, 1066
DraI	TTTAAA	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Eco130I	CCWWGG	3 cut(s)	89, 124, 302
Eco47I	GGWCC	2 cut(s)	147, 299
Eco57I	CTGAAG	2 cut(s)	984, 1038
Eco91I	GGTNACC	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoO65I	GGTNACC	1 cut(s)	1084
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	3 cut(s)	89, 124, 302
ErhI	CCWWGG	3 cut(s)	89, 124, 302
FaeI	CATG	7 cut(s)	93, 128, 201, 769, 835, 890, 1036
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	3 cut(s)	106, 128, 832
FatI	CATG	7 cut(s)	89, 124, 197, 765, 831, 886, 1032
FauI	CCCGC	1 cut(s)	958
FauNDI	CATATG	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	1029
Fnu4HI	GCNGC	7 cut(s)	34, 49, 528, 537, 651, 772, 852
FokI	GGATG	4 cut(s)	25, 320, 328, 714
Fsp4HI	GCNGC	7 cut(s)	34, 49, 528, 537, 651, 772, 852
FspBI	CTAG	3 cut(s)	437, 486, 920
GluI	GCNGC	7 cut(s)	34, 49, 528, 537, 651, 772, 852
GsuI	CTGGAG	1 cut(s)	497
HapII	CCGG	1 cut(s)	1089
HgaI	GACGC	3 cut(s)	452, 682, 1175
Hin1I	GRCGYC	1 cut(s)	1167
Hin1II	CATG	7 cut(s)	93, 128, 201, 769, 835, 890, 1036
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	8 cut(s)	131, 166, 194, 361, 578, 953, 1044, 1150
HpaII	CCGG	1 cut(s)	1089
HphI	GGTGA	3 cut(s)	140, 803, 1096
Hpy166II	GTNNAC	4 cut(s)	469, 812, 880, 1030
Hpy188I	TCNGA	3 cut(s)	211, 366, 577
Hpy188III	TCNNGA	2 cut(s)	476, 732
Hpy8I	GTNNAC	4 cut(s)	469, 812, 880, 1030
Hpy99I	CGWCG	3 cut(s)	56, 698, 1013
HpyAV	CCTTC	2 cut(s)	14, 145
HpyCH4III	ACNGT	3 cut(s)	11, 823, 949
HpyCH4IV	ACGT	2 cut(s)	453, 1008
HpyCH4V	TGCA	7 cut(s)	33, 74, 231, 341, 536, 566, 653
HpyF10VI	GCNNNNNNNGC	8 cut(s)	533, 536, 542, 563, 746, 848, 995, 1125
HpyF3I	CTNAG	3 cut(s)	157, 432, 1173
HpySE526I	ACGT	2 cut(s)	453, 1008
Hsp92I	GRCGYC	1 cut(s)	1167
Hsp92II	CATG	7 cut(s)	93, 128, 201, 769, 835, 890, 1036
Kzo9I	GATC	2 cut(s)	211, 1066
LmnI	GCTCC	2 cut(s)	716, 995
Lsp1109I	GCAGC	7 cut(s)	35, 45, 539, 548, 637, 758, 838
LweI	GCATC	2 cut(s)	350, 575
MaeI	CTAG	3 cut(s)	437, 486, 920
MaeII	ACGT	2 cut(s)	453, 1008
MaeIII	GTNAC	5 cut(s)	128, 640, 791, 1004, 1084
MalI	GATC	2 cut(s)	213, 1068
MboI	GATC	2 cut(s)	211, 1066
MboII	GAAGA	6 cut(s)	36, 68, 295, 626, 920, 1031
MfeI	CAATTG	2 cut(s)	601, 798
MflI	RGATCY	1 cut(s)	1066
MluCI	AATT	6 cut(s)	508, 601, 666, 720, 780, 798
MlyI	GAGTC	3 cut(s)	125, 1038, 1159
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	9 cut(s)	73, 391, 441, 472, 671, 706, 735, 967, 1180
MroXI	GAANNNNTTC	2 cut(s)	360, 465
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	2 cut(s)	885, 920
MspA1I	CMGCKG	2 cut(s)	530, 1163
MspI	CCGG	1 cut(s)	1089
MspR9I	CCNGG	2 cut(s)	816, 1090
MunI	CAATTG	2 cut(s)	601, 798
MvaI	CCWGG	1 cut(s)	816
MwoI	GCNNNNNNNGC	8 cut(s)	533, 536, 542, 563, 746, 848, 995, 1125
NciI	CCSGG	1 cut(s)	1090
NcoI	CCATGG	2 cut(s)	89, 124
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	2 cut(s)	211, 1066
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	7 cut(s)	93, 128, 201, 769, 835, 890, 1036
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	3 cut(s)	128, 791, 1084
NspI	RCATGY	1 cut(s)	1036
PaqCI	CACCTGC	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PdmI	GAANNNNTTC	2 cut(s)	360, 465
PfeI	GAWTC	5 cut(s)	166, 194, 361, 578, 953
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	7 cut(s)	35, 50, 529, 538, 652, 773, 853
PleI	GAGTC	3 cut(s)	125, 1038, 1158
PpsI	GAGTC	3 cut(s)	125, 1038, 1158
Psp6I	CCWGG	1 cut(s)	814
PspEI	GGTNACC	1 cut(s)	1084
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	147, 299
PstNI	CAGNNNCTG	2 cut(s)	370, 575
PsuI	RGATCY	1 cut(s)	1066
PvuII	CAGCTG	2 cut(s)	530, 1163
RsaI	GTAC	3 cut(s)	498, 675, 811
RsaNI	GTAC	3 cut(s)	497, 674, 810
RseI	CAYNNNNRTG	2 cut(s)	885, 920
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	7 cut(s)	34, 49, 528, 537, 651, 772, 852
Sau3AI	GATC	2 cut(s)	211, 1066
Sau96I	GGNCC	2 cut(s)	147, 299
SchI	GAGTC	3 cut(s)	125, 1038, 1159
ScrFI	CCNGG	2 cut(s)	816, 1090
SfaNI	GCATC	2 cut(s)	350, 575
SinI	GGWCC	2 cut(s)	147, 299
SmiMI	CAYNNNNRTG	2 cut(s)	885, 920
SmlI	CTYRAG	2 cut(s)	151, 1147
SmoI	CTYRAG	2 cut(s)	151, 1147
Sse9I	AATT	6 cut(s)	508, 601, 666, 720, 780, 798
SsiI	CCGC	1 cut(s)	965
SspMI	CTAG	3 cut(s)	437, 486, 920
StyD4I	CCNGG	2 cut(s)	814, 1088
StyI	CCWWGG	3 cut(s)	89, 124, 302
TaaI	ACNGT	3 cut(s)	11, 823, 949
TaiI	ACGT	2 cut(s)	456, 1011
TaqI	TCGA	1 cut(s)	1153
TasI	AATT	6 cut(s)	508, 601, 666, 720, 780, 798
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	5 cut(s)	166, 194, 361, 578, 953
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	3 cut(s)	714, 954, 1021
TseFI	GTSAC	3 cut(s)	128, 791, 1084
TseI	GCWGC	7 cut(s)	33, 48, 527, 536, 650, 771, 851
Tsp45I	GTSAC	3 cut(s)	128, 791, 1084
TspDTI	ATGAA	4 cut(s)	81, 186, 336, 1087
TspGWI	ACGGA	3 cut(s)	160, 334, 972
TspRI	CASTG	3 cut(s)	714, 954, 1021
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	147, 299
XagI	CCTNNNNNAGG	1 cut(s)	675
XapI	RAATTY	1 cut(s)	780
XceI	RCATGY	1 cut(s)	1036
XcmI	CCANNNNNNNNNTGG	2 cut(s)	893, 1066
XmiI	GTMKAC	1 cut(s)	1029
XmnI	GAANNNNTTC	2 cut(s)	360, 465
XspI	CTAG	3 cut(s)	437, 486, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.