Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8125388.1

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

236 .. 484

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8125388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgggcatcagcacagtggattcatcagtttctggtcttgggggttgtccatatgctaaaggtgcttctggcaatgttgccactgaggatgttgtgtacatgcttaatggacttggagtgaagaccaacatagatcttcaaaagctcatgttggctggggactttatctgcaagcacttggggcgctcacctggttcaaagacagctgttgccttgagtaaagtccctgctcagacctctaagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

82

Amino Acids

8.33

Weight (kDa)

9.06

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	140, 198
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	145, 206, 244
AluI	AGCT	3 cut(s)	145, 206, 244
AlwNI	CAGNNNCTG	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	187
BglII	AGATCT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	75, 245
BseYI	CCCAGC	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	173, 209
BsmFI	GGGAC	2 cut(s)	173, 209
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	76, 244
BsrDI	GCAATG	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	96
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	16
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	84, 231, 240
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 181
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	21, 81
Cac8I	GCNNGC	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	186
CsiI	ACCWGGT	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	100, 148
CviJI	RGCY	4 cut(s)	145, 155, 206, 244
CviKI_1	RGCY	4 cut(s)	145, 155, 206, 244
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	3 cut(s)	84, 231, 240
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	103, 151
FaiI	YATR	5 cut(s)	52, 54, 101, 131, 149
FaqI	GGGAC	2 cut(s)	173, 209
FatI	CATG	2 cut(s)	99, 147
FauNDI	CATATG	1 cut(s)	52
FokI	GGATG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	187
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	103, 151
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	234
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 181
HpyF3I	CTNAG	3 cut(s)	84, 231, 240
Hsp92II	CATG	2 cut(s)	103, 151
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	18, 54, 141, 177, 204, 240
LweI	GCATC	1 cut(s)	15
MabI	ACCWGGT	1 cut(s)	190
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	128, 133
MflI	RGATCY	1 cut(s)	133
MnlI	CCTC	2 cut(s)	79, 247
MseI	TTAA	2 cut(s)	105, 247
MspA1I	CMGCKG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	62, 181
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	103, 151
NspI	RCATGY	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	105, 247
Sau3AI	GATC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	6 cut(s)	64, 147, 193, 208, 239, 246
SexAI	ACCWGGT	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	105, 247
Tru9I	TTAA	2 cut(s)	105, 247
TscAI	CASTG	2 cut(s)	21, 88
TspDTI	ATGAA	1 cut(s)	12
TspRI	CASTG	2 cut(s)	21, 88
XceI	RCATGY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.