Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

23878279 .. 23890502

Gene Structure 12224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30200.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGCATAAGCCGGCTTTAGCGAACATCCCGGAGTTTGTCAAGATAGTCGAAGTGGGTCCGAGGGATGGACTCCAGAATGAGAAGCAGATTGTTCCAACTCATGTTAAGGTTAGGTTGATACAGATGCTGGTTTCGTCTGGCCTCACTGTTGTTGAGGCTACCAGCTTTGTCTCACCCAAATGGGTTCCACAGCTGGCAGATGCAAAGGATGTAATGGAGGCCATTCGAAATATGGGAGGTGCTAGATTTCCCGTTTTAACCCCCAATCTCAAAGGTTTTGAGGCTGCTGTCGATGCTGGTGCAAAAGAAGTTGCCATCTTTGCCTCAGCTTCTGAGTCTTTTTCAAAATCAAATATAAACTGCAGCATTGAAGACAGTCTCAGACGTTACCGTGATGTTGCAAGTGCTGCCAGAAAGCTTTCTATTCCTGTTCGTGGATATATATCATGTGTTGTGGGCTGTCCAACGGAAGGAGCTGTTCCCCCATCTCAAGTAGCTTATGTGGCCAAAGAACTTTATGATATGGGTTGCTTTGACATTTCTCTCGGTGATACAATTGGTGTTGGTACTCCAGGTACTGTTGTTCCAATGCTTAAAGAAGTTATTGATGTGGTCCCTGCTGAGAACCTTGCTGTCCATTTCCATGACACGTATGGCCAAGCTCTTTCAAACATACTAGTATCTCTTCAGATGGGCATCAGCACAGTGGATTCATCAGTCTCTGGTCTTGGGGGTTGTCCATATGCTAAAGGTGCGTCTGGCAATGTTGCTACCGAGGATGTTGTGTACATGCTTAATGGACTTGGAGTGAAGACCAACATAGATCTTAAAACGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACTTAGGGCGCTCATCTGGTTCAAAGACAGCTGTTGCCTTGAGTAAAGTCCCTGCTCATGCCTCTAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

314

Amino Acids

32.99

Weight (kDa)

7.0

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	5 - 223	1.1e-43	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	507, 658
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	3 cut(s)	571, 580, 791
AfiI	CCNNNNNNNGG	3 cut(s)	68, 437, 473
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	4 cut(s)	348, 374, 672, 891
AhlI	ACTAGT	1 cut(s)	679
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	9 cut(s)	168, 196, 332, 421, 479, 500, 665, 899, 937
AluI	AGCT	9 cut(s)	168, 196, 332, 421, 479, 500, 665, 899, 937
Alw26I	GTCTC	3 cut(s)	178, 386, 727
AlwNI	CAGNNNCTG	4 cut(s)	130, 335, 581, 725
AoxI	GGCC	4 cut(s)	142, 222, 507, 658
ApeKI	GCWGC	3 cut(s)	287, 366, 410
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	879
AspS9I	GGNCC	2 cut(s)	59, 616
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	168, 563
AsuII	TTCGAA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	59, 616
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BalI	TGGCCA	2 cut(s)	509, 660
BbsI	GAAGAC	2 cut(s)	381, 821
BbvCI	CCTCAGC	1 cut(s)	328
BbvI	GCAGC	3 cut(s)	274, 378, 397
BccI	CCATC	4 cut(s)	62, 326, 496, 688
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	178, 386, 727
BcuI	ACTAGT	1 cut(s)	679
BfaI	CTAG	2 cut(s)	246, 680
BfmI	CTRYAG	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	880
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	3 cut(s)	288, 367, 411
BlsI	GCNGC	3 cut(s)	289, 368, 412
Bme1390I	CCNGG	2 cut(s)	32, 576
Bme18I	GGWCC	2 cut(s)	59, 616
BmgT120I	GGNCC	2 cut(s)	59, 616
BmiI	GGNNCC	3 cut(s)	60, 189, 618
BmrFI	CCNGG	2 cut(s)	32, 576
BmsI	GCATC	4 cut(s)	117, 193, 286, 708
BpiI	GAAGAC	2 cut(s)	381, 821
BpmI	CTGGAG	2 cut(s)	59, 558
Bpu10I	CCTNAGC	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	2 cut(s)	477, 928
BpuMI	CCSGG	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	654
BsaBI	GATNNNNATC	2 cut(s)	445, 698
BsaJI	CCNNGG	2 cut(s)	62, 777
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 437, 473
Bse118I	RCCGGY	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	772
Bse8I	GATNNNNATC	2 cut(s)	445, 698
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	62, 777
BseGI	GGATG	4 cut(s)	27, 73, 217, 787
BseJI	GATNNNNATC	2 cut(s)	445, 698
BseLI	CCNNNNNNNGG	3 cut(s)	68, 437, 473
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	4 cut(s)	327, 342, 397, 615
BseXI	GCAGC	3 cut(s)	274, 378, 397
BseYI	CCCAGC	1 cut(s)	848
BshFI	GGCC	4 cut(s)	144, 224, 509, 660
BsiSI	CCGG	2 cut(s)	14, 32
BslFI	GGGAC	3 cut(s)	602, 866, 902
BslI	CCNNNNNNNGG	3 cut(s)	68, 437, 473
BsmAI	GTCTC	3 cut(s)	178, 386, 727
BsmFI	GGGAC	3 cut(s)	602, 866, 902
BsnI	GGCC	4 cut(s)	144, 224, 509, 660
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	1 cut(s)	826
BspANI	GGCC	4 cut(s)	144, 224, 509, 660
BspCNI	CTCAG	4 cut(s)	328, 341, 396, 616
BspLI	GGNNCC	3 cut(s)	60, 189, 618
BspMAI	CTGCAG	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	772
BsrFI	RCCGGY	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	789
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	62, 777
BssMI	GATC	1 cut(s)	826
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	5 cut(s)	151, 380, 395, 583, 709
Bst6I	CTCTTC	1 cut(s)	693
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	789
BstBAI	YACGTR	1 cut(s)	654
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	15, 198, 866
BstDEI	CTNAG	6 cut(s)	328, 336, 383, 624, 871, 933
BstF5I	GGATG	4 cut(s)	27, 73, 217, 787
BstH2I	RGCGCY	1 cut(s)	880
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	1 cut(s)	829
BstMAI	GTCTC	3 cut(s)	178, 386, 727
BstMBI	GATC	1 cut(s)	826
BstMWI	GCNNNNNNNGC	6 cut(s)	296, 323, 410, 506, 755, 874
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	796
BstSCI	CCNGG	2 cut(s)	30, 574
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	274, 378, 397
BstV2I	GAAGAC	2 cut(s)	381, 821
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BsuRI	GGCC	4 cut(s)	144, 224, 509, 660
BtsCI	GGATG	4 cut(s)	27, 73, 217, 787
BtsIMutI	CAGTG	2 cut(s)	147, 714
Cac8I	GCNNGC	3 cut(s)	15, 198, 866
CaiI	CAGNNNCTG	4 cut(s)	130, 335, 581, 725
CfoI	GCGC	1 cut(s)	879
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	59, 616
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	3 cut(s)	570, 579, 790
CviAII	CATG	6 cut(s)	104, 450, 647, 793, 841, 926
CviQI	GTAC	3 cut(s)	570, 579, 790
DdeI	CTNAG	6 cut(s)	328, 336, 383, 624, 871, 933
DpnI	GATC	1 cut(s)	828
DpnII	GATC	1 cut(s)	826
EaeI	YGGCCR	2 cut(s)	507, 658
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	59, 616
Eco57I	CTGAAG	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	9
FaeI	CATG	6 cut(s)	107, 453, 650, 796, 844, 929
FaqI	GGGAC	3 cut(s)	602, 866, 902
FatI	CATG	6 cut(s)	103, 449, 646, 792, 840, 925
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	3 cut(s)	288, 367, 411
FokI	GGATG	4 cut(s)	14, 80, 224, 794
Fsp4HI	GCNGC	3 cut(s)	288, 367, 411
FspBI	CTAG	2 cut(s)	246, 680
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	3 cut(s)	288, 367, 411
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	2 cut(s)	59, 558
HaeII	RGCGCY	1 cut(s)	880
HaeIII	GGCC	4 cut(s)	144, 224, 509, 660
HapII	CCGG	2 cut(s)	14, 32
HgaI	GACGC	1 cut(s)	747
HhaI	GCGC	1 cut(s)	879
Hin1II	CATG	6 cut(s)	107, 453, 650, 796, 844, 929
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	3 cut(s)	72, 338, 713
HpaII	CCGG	2 cut(s)	14, 32
HphI	GGTGA	2 cut(s)	168, 563
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	4 cut(s)	63, 337, 386, 693
Hpy188III	TCNNGA	2 cut(s)	43, 76
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	5 cut(s)	151, 380, 395, 583, 709
HpyCH4IV	ACGT	2 cut(s)	388, 653
HpyCH4V	TGCA	6 cut(s)	7, 206, 305, 366, 404, 864
HpyF10VI	GCNNNNNNNGC	6 cut(s)	296, 323, 410, 506, 755, 874
HpyF3I	CTNAG	6 cut(s)	328, 336, 383, 624, 871, 933
HpySE526I	ACGT	2 cut(s)	388, 653
Hsp92II	CATG	6 cut(s)	107, 453, 650, 796, 844, 929
HspAI	GCGC	1 cut(s)	877
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	826
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	3 cut(s)	274, 378, 397
LweI	GCATC	4 cut(s)	117, 193, 286, 708
MaeI	CTAG	2 cut(s)	246, 680
MaeII	ACGT	2 cut(s)	388, 653
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	828
MboI	GATC	1 cut(s)	826
MboII	GAAGA	3 cut(s)	386, 680, 826
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	826
MlsI	TGGCCA	2 cut(s)	509, 660
MluCI	AATT	1 cut(s)	558
MluNI	TGGCCA	2 cut(s)	509, 660
MlyI	GAGTC	2 cut(s)	66, 347
MmeI	TCCRAC	2 cut(s)	122, 491
MnlI	CCTC	9 cut(s)	57, 151, 155, 214, 233, 277, 337, 772, 940
Mox20I	TGGCCA	2 cut(s)	509, 660
Mph1103I	ATGCAT	1 cut(s)	9
MroNI	GCCGGC	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	421
MscI	TGGCCA	2 cut(s)	509, 660
MseI	TTAA	5 cut(s)	108, 260, 597, 798, 831
MslI	CAYNNNNRTG	2 cut(s)	181, 645
Msp20I	TGGCCA	2 cut(s)	509, 660
MspA1I	CMGCKG	2 cut(s)	196, 899
MspI	CCGG	2 cut(s)	14, 32
MspR9I	CCNGG	2 cut(s)	32, 576
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	6 cut(s)	296, 323, 410, 506, 755, 874
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	1 cut(s)	826
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	6 cut(s)	107, 453, 650, 796, 844, 929
NlaIV	GGNNCC	3 cut(s)	60, 189, 618
NsiI	ATGCAT	1 cut(s)	9
NspI	RCATGY	1 cut(s)	796
NspV	TTCGAA	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	289, 368, 412
PleI	GAGTC	2 cut(s)	66, 346
PpsI	GAGTC	2 cut(s)	66, 346
Ppu21I	YACGTR	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	3 cut(s)	60, 189, 618
PspPI	GGNCC	2 cut(s)	59, 616
PstI	CTGCAG	1 cut(s)	368
PstNI	CAGNNNCTG	4 cut(s)	130, 335, 581, 725
PsuI	RGATCY	1 cut(s)	826
PvuII	CAGCTG	2 cut(s)	196, 899
RsaI	GTAC	3 cut(s)	571, 580, 791
RsaNI	GTAC	3 cut(s)	570, 579, 790
RseI	CAYNNNNRTG	2 cut(s)	181, 645
SaqAI	TTAA	5 cut(s)	108, 260, 597, 798, 831
SatI	GCNGC	3 cut(s)	288, 367, 411
Sau3AI	GATC	1 cut(s)	826
Sau96I	GGNCC	2 cut(s)	59, 616
SchI	GAGTC	2 cut(s)	66, 347
ScrFI	CCNGG	2 cut(s)	32, 576
SfaNI	GCATC	4 cut(s)	117, 193, 286, 708
SfcI	CTRYAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	2 cut(s)	59, 616
SmiMI	CAYNNNNRTG	2 cut(s)	181, 645
SmlI	CTYRAG	2 cut(s)	492, 907
SmoI	CTYRAG	2 cut(s)	492, 907
SpeI	ACTAGT	1 cut(s)	679
Sse9I	AATT	1 cut(s)	558
SspMI	CTAG	2 cut(s)	246, 680
StyD4I	CCNGG	2 cut(s)	30, 574
TaaI	ACNGT	5 cut(s)	151, 380, 395, 583, 709
TaiI	ACGT	2 cut(s)	391, 656
TaqI	TCGA	3 cut(s)	51, 229, 294
TasI	AATT	1 cut(s)	558
TatI	WGTACW	1 cut(s)	789
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	5 cut(s)	108, 260, 597, 798, 831
Tru9I	TTAA	5 cut(s)	108, 260, 597, 798, 831
TscAI	CASTG	2 cut(s)	154, 714
TseI	GCWGC	3 cut(s)	287, 366, 410
TspDTI	ATGAA	1 cut(s)	705
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	2 cut(s)	154, 714
VpaK11BI	GGWCC	2 cut(s)	59, 616
XceI	RCATGY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 653
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	2 cut(s)	246, 680
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.