Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014162.1

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

101352 .. 103826

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014162.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcaaaaagggaagaaaacaaaagacagaataagaagcaggatatgggtggggaaatgaaatgtaagggagccctacaggtgtcatttggtcattcaatgagccataacagggtatcaagacatatgaggaggaatgtgtattacaggaatggagcagttgcaggggccctggacgcttcctctttgtcaactcatcatataagctcttcaagcaataagccggcattaggaaacatcccagagtttgtcaagatagtagaagtcggtcccaaggatggactgcagaatgagaagcagattattcctactgatgtaaaggttcggttcatagaaatgcttgtttcgtccggactcactgttgttgaggctacaagttttgtatcgcccaaatggattccacagctggcagatgcaaaggatgtaatggaaacgattcggaatatgagaggtgctaaaattcctgttttaactcctaatctcaaaggttttgaggcggctgttgctgctggtgcatggaagttgccatctttgcctcagcttctgagtctttctcaaaatcaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

189

Amino Acids

20.73

Weight (kDa)

9.91

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	350
AciI	CCGC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	112, 230, 278
AgsI	TTSAA	2 cut(s)	99, 213
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	3 cut(s)	207, 406, 541
AluI	AGCT	3 cut(s)	207, 406, 541
AlwNI	CAGNNNCTG	1 cut(s)	544
Aor13HI	TCCGGA	1 cut(s)	350
AoxI	GGCC	1 cut(s)	168
ApaI	GGGCCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	168, 169, 269
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	172
BanII	GRGCYC	2 cut(s)	76, 172
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	2 cut(s)	272, 535
BciT130I	CCWGG	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	77, 284
BisI	GCNGC	2 cut(s)	498, 507
BlsI	GCNGC	2 cut(s)	499, 508
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	168, 169, 269
BmiI	GGNNCC	4 cut(s)	73, 169, 170, 271
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
Bpu10I	CCTNAGC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	171, 273
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 230, 278
Bse118I	RCCGGY	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	171, 273
BseGI	GGATG	3 cut(s)	237, 283, 427
BseLI	CCNNNNNNNGG	3 cut(s)	112, 230, 278
BseMII	CTCAG	2 cut(s)	536, 551
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	493
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	224, 351
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	112, 230, 278
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	170
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	76, 172
Bsp13I	TCCGGA	1 cut(s)	350
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	537, 550
BspEI	TCCGGA	1 cut(s)	350
BspLI	GGNNCC	4 cut(s)	73, 169, 170, 271
BspMAI	CTGCAG	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	171, 273
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	225, 408
BstDEI	CTNAG	2 cut(s)	537, 545
BstF5I	GGATG	3 cut(s)	237, 283, 427
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 213, 503, 506, 512, 532
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	2 cut(s)	77, 284
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	237, 283, 427
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	225, 408
CaiI	CAGNNNCTG	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	3 cut(s)	168, 169, 269
CseI	GACGC	1 cut(s)	185
CviAII	CATG	1 cut(s)	516
CviJI	RGCY	9 cut(s)	74, 105, 170, 207, 223, 371, 406, 500, 541
CviKI_1	RGCY	9 cut(s)	74, 105, 170, 207, 223, 371, 406, 500, 541
DdeI	CTNAG	2 cut(s)	537, 545
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	76, 172
Eco47I	GGWCC	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	168, 169
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	76, 172
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	519
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	1 cut(s)	515
FauNDI	CATATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	498, 507
FokI	GGATG	3 cut(s)	224, 290, 434
FriOI	GRGCYC	2 cut(s)	76, 172
Fsp4HI	GCNGC	2 cut(s)	498, 507
GluI	GCNGC	2 cut(s)	498, 507
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	224, 351
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	519
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	4 cut(s)	354, 397, 436, 547
HpaII	CCGG	2 cut(s)	224, 351
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	2 cut(s)	441, 546
Hpy188III	TCNNGA	3 cut(s)	120, 253, 351
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	164, 286, 416, 515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 213, 503, 506, 512, 532
HpyF3I	CTNAG	2 cut(s)	537, 545
Hsp92II	CATG	1 cut(s)	519
Kpn2I	TCCGGA	1 cut(s)	350
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	71, 155
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	1 cut(s)	403
MboII	GAAGA	2 cut(s)	26, 201
MhlI	GDGCHC	2 cut(s)	76, 172
MluCI	AATT	1 cut(s)	459
MlyI	GAGTC	2 cut(s)	348, 556
MnlI	CCTC	7 cut(s)	123, 126, 193, 361, 443, 487, 546
MroI	TCCGGA	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	2 cut(s)	224, 351
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	6 cut(s)	176, 213, 503, 506, 512, 532
NaeI	GCCGGC	1 cut(s)	225
NdeI	CATATG	1 cut(s)	126
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	4 cut(s)	73, 169, 170, 271
PciSI	GCTCTTC	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	397, 436
PkrI	GCNGC	2 cut(s)	499, 508
PleI	GAGTC	2 cut(s)	348, 555
PpsI	GAGTC	2 cut(s)	348, 555
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	4 cut(s)	73, 169, 170, 271
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	3 cut(s)	168, 169, 269
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	2 cut(s)	498, 507
Sau96I	GGNCC	3 cut(s)	168, 169, 269
SchI	GAGTC	2 cut(s)	348, 556
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	76, 172
SetI	ASST	7 cut(s)	84, 209, 324, 408, 454, 490, 543
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	2 cut(s)	77, 284
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	361
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	459
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	2 cut(s)	397, 436
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	506
TspDTI	ATGAA	2 cut(s)	74, 319
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.