Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8321319.1

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

162 .. 884

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8321319.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggaagcggttcgcaatctcgagggtagtgctacattgcctgttctgacacctaatttgaaaggatttgaagcagctgttgcagctggtgctaaggtcgtagcagtctttgcatcagcttccgagtcattttcaaaggcgaacatcaattgtagcgtagaagagagtcttgttcgttaccgagctgttactcgtgctgcaaaggagctttccattcctgttcgagggtatgtatcatgtgccattggatgtccagaagagggagcaattcccccatcaaaagtggcatatgtagcaaaacaactctatgacatgggctgctttgaaatttctcttgccgacacgaccggaattggtaccccaacgacggttgtgccaatgcttgaagctgtgatggctgttgttcctgttgagaagctagctgttcatttccatgatacgtacgggcattctcttccaaatattcttgcctctcttcaaatggggattggcacagtcgactcctctgttgcaggtttaggtgggtgtccatatgccaagggagcttccggtaacgttgccactgaagatgttgtatacatgcttagtgaacttggtgtggaaaccaatgtggatttggccaagctcctggtggctggtgatttcatcagcaggcatttaggtcgcccgtctggttcaaagatcgccattgcctcgagtcctgtaaaagctgatgactcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

240

Amino Acids

24.76

Weight (kDa)

5.24

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	503
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AccI	GTMKAC	2 cut(s)	498, 576
AciI	CCGC	1 cut(s)	8
AclI	AACGTT	1 cut(s)	555
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	2 cut(s)	358, 443
AfiI	CCNNNNNNNGG	3 cut(s)	224, 260, 367
AgsI	TTSAA	7 cut(s)	61, 71, 135, 326, 386, 479, 678
AjnI	CCWGG	1 cut(s)	627
Ama87I	CYCGRG	2 cut(s)	20, 694
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	4 cut(s)	74, 83, 197, 318
ApoI	RAATTY	1 cut(s)	327
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
Asp700I	GAANNNNTTC	1 cut(s)	9
Asp718I	GGTACC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	650
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	2 cut(s)	20, 694
BalI	TGGCCA	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	86, 95, 184, 305
BccI	CCATC	2 cut(s)	283, 388
BcgI	CGANNNNNNTGC	6 cut(s)	11, 45, 355, 389, 644, 678
BciT130I	CCWGG	1 cut(s)	629
BfaI	CTAG	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	4 cut(s)	75, 84, 198, 319
BlsI	GCNGC	4 cut(s)	76, 85, 199, 320
Bme1390I	CCNGG	1 cut(s)	629
BmeT110I	CYCGRG	2 cut(s)	20, 694
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	1 cut(s)	122
BmtI	GCTAGC	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	2 cut(s)	347, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 260, 367
Bse3DI	GCAATG	2 cut(s)	35, 687
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	3 cut(s)	224, 260, 367
BseMI	GCAATG	2 cut(s)	35, 687
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	4 cut(s)	86, 95, 184, 305
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	348
BsiHKCI	CYCGRG	2 cut(s)	20, 694
BsiSI	CCGG	2 cut(s)	348, 549
BsiWI	CGTACG	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	224, 260, 367
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	620
BsoBI	CYCGRG	2 cut(s)	20, 694
Bsp143I	GATC	1 cut(s)	681
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	620
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	35, 687
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	1 cut(s)	681
BssNAI	GTATAC	1 cut(s)	577
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	537
Bst1107I	GTATAC	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	2 cut(s)	370, 496
Bst6I	CTCTTC	4 cut(s)	156, 252, 459, 480
BstAPI	GCANNNNNTGC	3 cut(s)	80, 89, 110
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	420, 653
BstDEI	CTNAG	3 cut(s)	93, 584, 720
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	1 cut(s)	684
BstMBI	GATC	1 cut(s)	681
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 83, 89, 110, 293, 395, 542
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	627
BstSNI	TACGTA	1 cut(s)	441
BstV1I	GCAGC	4 cut(s)	86, 95, 184, 305
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstZ17I	GTATAC	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	561
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	2 cut(s)	420, 653
Csp6I	GTAC	2 cut(s)	357, 442
CviAII	CATG	4 cut(s)	237, 313, 434, 580
CviQI	GTAC	2 cut(s)	357, 442
DdeI	CTNAG	3 cut(s)	93, 584, 720
DpnI	GATC	1 cut(s)	683
DpnII	GATC	1 cut(s)	681
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	4 cut(s)	156, 252, 459, 480
EarI	CTCTTC	4 cut(s)	156, 252, 459, 480
Eco105I	TACGTA	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	2 cut(s)	20, 694
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	4 cut(s)	240, 316, 437, 583
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	4 cut(s)	236, 312, 433, 579
FauNDI	CATATG	2 cut(s)	289, 532
FblI	GTMKAC	2 cut(s)	498, 576
Fnu4HI	GCNGC	4 cut(s)	75, 84, 198, 319
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	75, 84, 198, 319
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	4 cut(s)	75, 84, 198, 319
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	2 cut(s)	348, 549
Hin1II	CATG	4 cut(s)	240, 316, 437, 583
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	5 cut(s)	125, 166, 500, 697, 716
HpaII	CCGG	2 cut(s)	348, 549
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	3 cut(s)	499, 577, 590
Hpy188I	TCNGA	2 cut(s)	48, 124
Hpy188III	TCNNGA	2 cut(s)	20, 254
Hpy8I	GTNNAC	3 cut(s)	499, 577, 590
Hpy99I	CGWCG	1 cut(s)	370
HpyCH4III	ACNGT	2 cut(s)	370, 496
HpyCH4IV	ACGT	2 cut(s)	440, 555
HpyCH4V	TGCA	4 cut(s)	83, 113, 200, 512
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 83, 89, 110, 293, 395, 542
HpyF3I	CTNAG	3 cut(s)	93, 584, 720
HpySE526I	ACGT	2 cut(s)	440, 555
Hsp92II	CATG	4 cut(s)	240, 316, 437, 583
KpnI	GGTACC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	681
LmnI	GCTCC	4 cut(s)	205, 263, 542, 630
Lsp1109I	GCAGC	4 cut(s)	86, 95, 184, 305
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	2 cut(s)	440, 555
MaeIII	GTNAC	3 cut(s)	176, 187, 551
MalI	GATC	1 cut(s)	683
MboI	GATC	1 cut(s)	681
MboII	GAAGA	5 cut(s)	173, 269, 446, 467, 578
MfeI	CAATTG	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	5 cut(s)	55, 148, 267, 327, 351
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	5 cut(s)	134, 175, 494, 706, 710
MnlI	CCTC	6 cut(s)	16, 218, 253, 481, 514, 703
Mox20I	TGGCCA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	620
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	2 cut(s)	77, 86
MspI	CCGG	2 cut(s)	348, 549
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	7 cut(s)	80, 83, 89, 110, 293, 395, 542
NdeI	CATATG	2 cut(s)	289, 532
NdeII	GATC	1 cut(s)	681
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	4 cut(s)	240, 316, 437, 583
NlaIV	GGNNCC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	583
PaeR7I	CTCGAG	2 cut(s)	20, 694
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	9
Pfl23II	CGTACG	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	76, 85, 199, 320
PleI	GAGTC	5 cut(s)	133, 174, 494, 705, 710
PpsI	GAGTC	5 cut(s)	133, 174, 494, 705, 710
Ppu21I	YACGTR	1 cut(s)	441
Psp1406I	AACGTT	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspLI	CGTACG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	694
PvuII	CAGCTG	2 cut(s)	77, 86
RsaI	GTAC	2 cut(s)	358, 443
RsaNI	GTAC	2 cut(s)	357, 442
RseI	CAYNNNNRTG	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	497
SatI	GCNGC	4 cut(s)	75, 84, 198, 319
Sau3AI	GATC	1 cut(s)	681
SchI	GAGTC	5 cut(s)	134, 175, 494, 706, 710
ScrFI	CCNGG	1 cut(s)	629
SfaNI	GCATC	1 cut(s)	122
Sfr274I	CTCGAG	2 cut(s)	20, 694
SlaI	CTCGAG	2 cut(s)	20, 694
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	20, 694
SmoI	CTYRAG	2 cut(s)	20, 694
SnaBI	TACGTA	1 cut(s)	441
Sse9I	AATT	5 cut(s)	55, 148, 267, 327, 351
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	370, 496
TaiI	ACGT	2 cut(s)	443, 558
TaqI	TCGA	4 cut(s)	21, 223, 498, 695
TasI	AATT	5 cut(s)	55, 148, 267, 327, 351
TscAI	CASTG	1 cut(s)	568
TseI	GCWGC	4 cut(s)	74, 83, 197, 318
TspDTI	ATGAA	2 cut(s)	416, 634
TspRI	CASTG	1 cut(s)	568
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	2 cut(s)	613, 628
XhoI	CTCGAG	2 cut(s)	20, 694
XmiI	GTMKAC	2 cut(s)	498, 576
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.