MD03G1157200.v1.1

Hydroxymethylglutaryl-CoA lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
18663719 .. 18670900
7182 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1157200.v1.1.491

Sequence Viewer

Length: 1332 bp
ATGTCGAGCGTGGAGGAGCCACTTGGTTGTGACAAATTGCCTAGCATGAGTACCATGGACCGGATTCAGAGGTTCTCATCCACTGCTTGCAGGTCTAGGTCAGATGATGCAGCACTGGGGAACTGTTGGATCGAAGGAAGAAGTTGTAGCACATCGAATAGCTGCGACGAAGATTATGATGAATATACAAGGGAGGCCTTTCCATGGAAAAGACATACAAGAGACCAGGACTTGTCCCATGGTGACTCATTCAATCAACAGACACTAAGCTTATGCAGGAATCACAGGGTATTTGTAAATATTTGTGATTCATGGTATTTCTCGGATCAATATAGCCCCAGGTGCAATGACACAGATATGGCAAATAAGTTTTTAAAAGGTATACCAAAGTTTGTGAAGATAGTAGAAGTAGGTCCAAGGGATGGACTACAAAATGAAAAGAATATTGTATCTGCATCTGTAAAGATTGAACTGATTCAGAGACTGGTATCTTCTGGGTTGTCTGTTGTCGAGGCTACAAGTTTTGTGTCGCCCAAATGGGTTCCTCAGCTAGCAGATGCAAAAGGTGTAATGGAAGCAGTTCAAAGTCTGGAGGGTGCTAGATTGCCTGTACTGACACCCAATTTACAAGGTTTTGAAGCAGCTATTGCAGCAGGTGCTAAGGATATAGCGGTGTTTGCAGCAGCTTCTGAATCATTTTCAAAGTCAAACATTAATTGTAGCATTGAAGAAAGTCTTGTTCGTTATCGTGCTGTTACTCATGCTGCGAAAGAGCTTTCAATTCCTGTACGAGGCCTCCTCTCTCTCTGTCTCTCTGTGTCTCTGTCTCTGTATGTCTCGTGCGTTGTTGGATGTCCAGAGGAGGGAGCAATTTCTCCATCAAAAGTGGCATATGTTGCAAAAGAACTTTACAACATGGGCTGCTTTGAAATTTCTCTTGGTGACACAATCGGGGTTGGTACACCTGGGACGGTTGTCCCCATGCTGGAAGCTGTAATGGCTGTTGTTCCTGTTGAAAAGCTTGCTGTTCACTTCCATGACACCTATGGGCAATCTCTATCAAATATTCTCGTCTCTCTTCAAATGGGGATTGGCACACTGGATTCCTCAATTGCGGGTTTAGGCGGGTGTCCATATGCCAAAGGAGCTTCAGGCAACGTTGCCACTGAAGATGTTGTGTACATGCTGAATGGACTCGGTGTGAAAACCAATGTGGATTTGGCGAAGCTTTTGACGGCTGGGGATTTCATCAGCAAGCATTTGGGTCGGCCGTCTGGCTCAAAGACCGCGGTTGCCTTGAGTCGAGTCACTGCTGATGGCTCTAAGATATAA

Protein Analysis

444

Amino Acids

47.46

Weight (kDa)

5.62

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMGL-like PF00682 132 - 417 5.7e-56 HMGL-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 2 cut(s) 81, 644
AccB7I CCANNNNNTGG 1 cut(s) 422
AccI GTMKAC 1 cut(s) 382
AccII CGCG 1 cut(s) 1289
AciI CCGC 5 cut(s) 671, 1115, 1125, 1287, 1289
AclI AACGTT 1 cut(s) 1158
AclWI GGATC 2 cut(s) 137, 333
AcoI YGGCCR 1 cut(s) 1268
AcsI RAATTY 1 cut(s) 930
AcuI CTGAAG 2 cut(s) 1134, 1188
AfaI GTAC 5 cut(s) 52, 612, 789, 961, 1181
AfiI CCNNNNNNNGG 6 cut(s) 60, 204, 422, 791, 863, 985
AjnI CCWGG 3 cut(s) 225, 338, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
Alw26I GTCTC 7 cut(s) 216, 475, 815, 825, 831, 841, 1078
AlwI GGATC 2 cut(s) 137, 333
AlwNI CAGNNNCTG 2 cut(s) 484, 689
AoxI GGCC 3 cut(s) 195, 793, 1268
ApeKI GCWGC 8 cut(s) 110, 162, 641, 650, 680, 683, 764, 921
ApoI RAATTY 1 cut(s) 930
AseI ATTAAT 1 cut(s) 714
Asp700I GAANNNNTTC 2 cut(s) 474, 579
AspS9I GGNCC 2 cut(s) 58, 413
AsuHPI GGTGA 2 cut(s) 254, 953
AsuNHI GCTAGC 1 cut(s) 550
AvaII GGWCC 2 cut(s) 58, 413
BauI CACGAG 1 cut(s) 838
BbvCI CCTCAGC 1 cut(s) 546
BbvI GCAGC 8 cut(s) 122, 149, 653, 662, 692, 695, 751, 908
BccI CCATC 3 cut(s) 416, 886, 1310
BceAI ACGGC 2 cut(s) 1251, 1255
BcgI CGANNNNNNTGC 2 cut(s) 1247, 1281
BciT130I CCWGG 3 cut(s) 227, 340, 966
BcoDI GTCTC 7 cut(s) 216, 475, 815, 825, 831, 841, 1078
BfaI CTAG 4 cut(s) 42, 96, 551, 600
BfuAI ACCTGC 2 cut(s) 81, 644
BisI GCNGC 8 cut(s) 111, 163, 642, 651, 681, 684, 765, 922
BlsI GCNGC 8 cut(s) 112, 164, 643, 652, 682, 685, 766, 923
Bme1390I CCNGG 3 cut(s) 227, 340, 966
Bme18I GGWCC 2 cut(s) 58, 413
BmgT120I GGNCC 2 cut(s) 58, 413
BmiI GGNNCC 2 cut(s) 18, 543
BmrFI CCNGG 3 cut(s) 227, 340, 966
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 97, 464, 547
BmtI GCTAGC 1 cut(s) 554
BmuI ACTGGG 1 cut(s) 125
BoxI GACNNNNGTC 1 cut(s) 974
BplI GAGNNNNNCTC 2 cut(s) 783, 815
BpmI CTGGAG 1 cut(s) 611
Bpu10I CCTNAGC 2 cut(s) 546, 660
BpuEI CTTGAG 1 cut(s) 1318
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 7 cut(s) 54, 203, 238, 338, 416, 965, 1287
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 204, 422, 791, 863, 985
Bse1I ACTGG 3 cut(s) 120, 489, 1104
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 3 cut(s) 227, 340, 966
BseDI CCNNGG 7 cut(s) 54, 203, 238, 338, 416, 965, 1287
BseGI GGATG 3 cut(s) 77, 427, 857
BseLI CCNNNNNNNGG 6 cut(s) 60, 204, 422, 791, 863, 985
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 3 cut(s) 120, 489, 1104
BseRI GAGGAG 3 cut(s) 29, 788, 875
BseX3I CGGCCG 1 cut(s) 1268
BseXI GCAGC 8 cut(s) 122, 149, 653, 662, 692, 695, 751, 908
BseYI CCCAGC 1 cut(s) 1238
Bsh1236I CGCG 1 cut(s) 1289
Bsh1285I CGRYCG 1 cut(s) 1271
BshFI GGCC 3 cut(s) 197, 795, 1270
BsiEI CGRYCG 1 cut(s) 1271
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 3 cut(s) 220, 962, 982
BslI CCNNNNNNNGG 6 cut(s) 60, 204, 422, 791, 863, 985
BsmAI GTCTC 7 cut(s) 216, 475, 815, 825, 831, 841, 1078
BsmBI CGTCTC 1 cut(s) 1078
BsmFI GGGAC 3 cut(s) 220, 962, 982
BsnI GGCC 3 cut(s) 197, 795, 1270
Bso31I GGTCTC 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 1179
Bsp143I GATC 2 cut(s) 129, 325
Bsp19I CCATGG 3 cut(s) 54, 203, 238
BspACI CCGC 5 cut(s) 671, 1115, 1125, 1287, 1289
BspANI GGCC 3 cut(s) 197, 795, 1270
BspCNI CTCAG 1 cut(s) 559
BspFNI CGCG 1 cut(s) 1289
BspLI GGNNCC 2 cut(s) 18, 543
BspMI ACCTGC 2 cut(s) 81, 644
BspOI GCTAGC 1 cut(s) 554
BspPI GGATC 2 cut(s) 137, 333
BspTNI GGTCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 1179
BsrI ACTGG 3 cut(s) 120, 489, 1104
BssECI CCNNGG 7 cut(s) 54, 203, 238, 338, 416, 965, 1287
BssMI GATC 2 cut(s) 129, 325
BssNAI GTATAC 1 cut(s) 383
BssSI CACGAG 1 cut(s) 838
BssT1I CCWWGG 4 cut(s) 54, 203, 238, 416
Bst1107I GTATAC 1 cut(s) 383
Bst2BI CACGAG 1 cut(s) 838
Bst2UI CCWGG 3 cut(s) 227, 340, 966
Bst4CI ACNGT 2 cut(s) 125, 973
Bst6I CTCTTC 1 cut(s) 1083
BstAPI GCANNNNNTGC 3 cut(s) 647, 656, 896
BstAUI TGTACA 1 cut(s) 1179
BstC8I GCNNGC 4 cut(s) 88, 552, 1023, 1256
BstDEI CTNAG 4 cut(s) 266, 546, 660, 1323
BstDSI CCRYGG 4 cut(s) 54, 203, 238, 1287
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 77, 427, 857
BstFNI CGCG 1 cut(s) 1289
BstKTI GATC 2 cut(s) 132, 328
BstMAI GTCTC 7 cut(s) 216, 475, 815, 825, 831, 841, 1078
BstMBI GATC 2 cut(s) 129, 325
BstMCI CGRYCG 1 cut(s) 1271
BstMWI GCNNNNNNNGC 8 cut(s) 342, 647, 650, 656, 677, 896, 998, 1145
BstNI CCWGG 3 cut(s) 227, 340, 966
BstNSI RCATGY 1 cut(s) 1186
BstPAI GACNNNNGTC 1 cut(s) 974
BstSCI CCNGG 3 cut(s) 225, 338, 964
BstUI CGCG 1 cut(s) 1289
BstV1I GCAGC 8 cut(s) 122, 149, 653, 662, 692, 695, 751, 908
BstZ17I GTATAC 1 cut(s) 383
BstZI CGGCCG 1 cut(s) 1268
BsuRI GGCC 3 cut(s) 197, 795, 1270
BtgI CCRYGG 4 cut(s) 54, 203, 238, 1287
BtsCI GGATG 3 cut(s) 77, 427, 857
BtsI GCAGTG 2 cut(s) 81, 1308
BtsIMutI CAGTG 5 cut(s) 81, 113, 1097, 1164, 1308
BveI ACCTGC 2 cut(s) 81, 644
Cac8I GCNNGC 4 cut(s) 88, 552, 1023, 1256
CaiI CAGNNNCTG 2 cut(s) 484, 689
Cfr13I GGNCC 2 cut(s) 58, 413
Cfr42I CCGCGG 1 cut(s) 1290
Csp6I GTAC 5 cut(s) 51, 611, 788, 960, 1180
CviQI GTAC 5 cut(s) 51, 611, 788, 960, 1180
DdeI CTNAG 4 cut(s) 266, 546, 660, 1323
DpnI GATC 2 cut(s) 131, 327
DpnII GATC 2 cut(s) 129, 325
DraI TTTAAA 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 1268
EagI CGGCCG 1 cut(s) 1268
Eam1104I CTCTTC 1 cut(s) 1083
EarI CTCTTC 1 cut(s) 1083
EclXI CGGCCG 1 cut(s) 1268
Eco130I CCWWGG 4 cut(s) 54, 203, 238, 416
Eco147I AGGCCT 2 cut(s) 197, 795
Eco31I GGTCTC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 58, 413
Eco52I CGGCCG 1 cut(s) 1268
Eco57I CTGAAG 2 cut(s) 1134, 1188
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoRII CCWGG 3 cut(s) 225, 338, 964
EcoT14I CCWWGG 4 cut(s) 54, 203, 238, 416
ErhI CCWWGG 4 cut(s) 54, 203, 238, 416
Esp3I CGTCTC 1 cut(s) 1078
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FaqI GGGAC 3 cut(s) 220, 962, 982
FauI CCCGC 2 cut(s) 1108, 1118
FauNDI CATATG 2 cut(s) 892, 1135
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 8 cut(s) 111, 163, 642, 651, 681, 684, 765, 922
FokI GGATG 3 cut(s) 64, 434, 864
Fsp4HI GCNGC 8 cut(s) 111, 163, 642, 651, 681, 684, 765, 922
FspBI CTAG 4 cut(s) 42, 96, 551, 600
GluI GCNGC 8 cut(s) 111, 163, 642, 651, 681, 684, 765, 922
GsaI CCCAGC 1 cut(s) 1242
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 3 cut(s) 197, 795, 1270
HapII CCGG 1 cut(s) 61
HindIII AAGCTT 3 cut(s) 268, 1019, 1226
HpaII CCGG 1 cut(s) 61
HphI GGTGA 2 cut(s) 254, 953
Hpy166II GTNNAC 4 cut(s) 383, 962, 1030, 1180
Hpy188I TCNGA 5 cut(s) 69, 103, 325, 480, 691
Hpy188III TCNNGA 2 cut(s) 590, 857
Hpy8I GTNNAC 4 cut(s) 383, 962, 1030, 1180
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 125, 973
HpyCH4IV ACGT 1 cut(s) 1158
HpyCH4V TGCA 9 cut(s) 90, 110, 276, 345, 455, 560, 650, 680, 899
HpyF10VI GCNNNNNNNGC 8 cut(s) 342, 647, 650, 656, 677, 896, 998, 1145
HpyF3I CTNAG 4 cut(s) 266, 546, 660, 1323
HpySE526I ACGT 1 cut(s) 1158
KspI CCGCGG 1 cut(s) 1290
Kzo9I GATC 2 cut(s) 129, 325
LmnI GCTCC 3 cut(s) 16, 866, 1145
Lsp1109I GCAGC 8 cut(s) 122, 149, 653, 662, 692, 695, 751, 908
LweI GCATC 3 cut(s) 97, 464, 547
MaeI CTAG 4 cut(s) 42, 96, 551, 600
MaeII ACGT 1 cut(s) 1158
MaeIII GTNAC 5 cut(s) 29, 242, 754, 941, 1306
MalI GATC 2 cut(s) 131, 327
MboI GATC 2 cut(s) 129, 325
MboII GAAGA 7 cut(s) 150, 182, 409, 483, 740, 1070, 1181
MfeI CAATTG 1 cut(s) 1110
MluCI AATT 7 cut(s) 35, 622, 715, 780, 870, 930, 1110
MlyI GAGTC 4 cut(s) 239, 1188, 1309, 1314
MmeI TCCRAC 2 cut(s) 107, 829
MroXI GAANNNNTTC 2 cut(s) 474, 579
MseI TTAA 2 cut(s) 374, 714
MslI CAYNNNNRTG 2 cut(s) 356, 1035
MspA1I CMGCKG 1 cut(s) 1289
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 3 cut(s) 227, 340, 966
MunI CAATTG 1 cut(s) 1110
MvaI CCWGG 3 cut(s) 227, 340, 966
MvnI CGCG 1 cut(s) 1289
MwoI GCNNNNNNNGC 8 cut(s) 342, 647, 650, 656, 677, 896, 998, 1145
NcoI CCATGG 3 cut(s) 54, 203, 238
NdeI CATATG 2 cut(s) 892, 1135
NdeII GATC 2 cut(s) 129, 325
NheI GCTAGC 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 18, 543
NmuCI GTSAC 4 cut(s) 29, 242, 941, 1306
NspI RCATGY 1 cut(s) 1186
PaqCI CACCTGC 1 cut(s) 644
PceI AGGCCT 2 cut(s) 197, 795
PdmI GAANNNNTTC 2 cut(s) 474, 579
PfeI GAWTC 6 cut(s) 64, 280, 308, 475, 692, 1103
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 8 cut(s) 112, 164, 643, 652, 682, 685, 766, 923
PleI GAGTC 4 cut(s) 239, 1188, 1308, 1313
PpsI GAGTC 4 cut(s) 239, 1188, 1308, 1313
PshAI GACNNNNGTC 1 cut(s) 974
PshBI ATTAAT 1 cut(s) 714
Psp1406I AACGTT 1 cut(s) 1158
Psp6I CCWGG 3 cut(s) 225, 338, 964
PspFI CCCAGC 1 cut(s) 1238
PspGI CCWGG 3 cut(s) 225, 338, 964
PspN4I GGNNCC 2 cut(s) 18, 543
PspPI GGNCC 2 cut(s) 58, 413
PstNI CAGNNNCTG 2 cut(s) 484, 689
RsaI GTAC 5 cut(s) 52, 612, 789, 961, 1181
RsaNI GTAC 5 cut(s) 51, 611, 788, 960, 1180
RseI CAYNNNNRTG 2 cut(s) 356, 1035
SacII CCGCGG 1 cut(s) 1290
SaqAI TTAA 2 cut(s) 374, 714
SatI GCNGC 8 cut(s) 111, 163, 642, 651, 681, 684, 765, 922
Sau3AI GATC 2 cut(s) 129, 325
Sau96I GGNCC 2 cut(s) 58, 413
SchI GAGTC 4 cut(s) 239, 1188, 1309, 1314
ScrFI CCNGG 3 cut(s) 227, 340, 966
SfaNI GCATC 3 cut(s) 97, 464, 547
Sfr303I CCGCGG 1 cut(s) 1290
SgrBI CCGCGG 1 cut(s) 1290
SinI GGWCC 2 cut(s) 58, 413
SmiMI CAYNNNNRTG 2 cut(s) 356, 1035
SmlI CTYRAG 1 cut(s) 1297
SmoI CTYRAG 1 cut(s) 1297
Sse9I AATT 7 cut(s) 35, 622, 715, 780, 870, 930, 1110
SseBI AGGCCT 2 cut(s) 197, 795
SsiI CCGC 5 cut(s) 671, 1115, 1125, 1287, 1289
SspI AATATT 3 cut(s) 301, 445, 1066
SspMI CTAG 4 cut(s) 42, 96, 551, 600
StuI AGGCCT 2 cut(s) 197, 795
StyD4I CCNGG 3 cut(s) 225, 338, 964
StyI CCWWGG 4 cut(s) 54, 203, 238, 416
TaaI ACNGT 2 cut(s) 125, 973
TaiI ACGT 1 cut(s) 1161
TaqI TCGA 5 cut(s) 5, 132, 155, 510, 1303
TasI AATT 7 cut(s) 35, 622, 715, 780, 870, 930, 1110
TatI WGTACW 2 cut(s) 610, 1179
TfiI GAWTC 6 cut(s) 64, 280, 308, 475, 692, 1103
Tru1I TTAA 2 cut(s) 374, 714
Tru9I TTAA 2 cut(s) 374, 714
TscAI CASTG 5 cut(s) 88, 120, 1104, 1171, 1315
TseFI GTSAC 4 cut(s) 29, 242, 941, 1306
TseI GCWGC 8 cut(s) 110, 162, 641, 650, 680, 683, 764, 921
Tsp45I GTSAC 4 cut(s) 29, 242, 941, 1306
TspDTI ATGAA 4 cut(s) 195, 300, 450, 1237
TspRI CASTG 5 cut(s) 88, 120, 1104, 1171, 1315
Van91I CCANNNNNTGG 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 58, 413
VspI ATTAAT 1 cut(s) 714
XagI CCTNNNNNAGG 1 cut(s) 789
XapI RAATTY 1 cut(s) 930
XceI RCATGY 1 cut(s) 1186
XcmI CCANNNNNNNNNTGG 2 cut(s) 1043, 1216
XmiI GTMKAC 1 cut(s) 382
XmnI GAANNNNTTC 2 cut(s) 474, 579
XspI CTAG 4 cut(s) 42, 96, 551, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.