Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Forward (+)

38028516 .. 38033070

Gene Structure 4555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGGAGGAATGTGTATTACAGGAATGGAGCAGTTGTAGGGGCCCTGGACGCTTCCTCTTTGTCAACTCATCATATAAGCTCTTCAAGCAATAAGCCGGCATTAGGAAACATCCCAGAGTTTGTCAAGATAGTAGAAATCGGTCCCAAGGATGGACTGCAGAATGAGAAGCAGATTATTCCTACTGATGTAAAGGTTCGGTTCATAGAAATGCTTGTTTCGTCCGGACTCACTGTTGTTGAGGCTACAAGTTTTGTCTCGCCCAAATGGATTCCACAGTTGGCAGATGCAAAGGATGTAATGGAAGCGATTCGGAATATGGGAGGTGCTAAATTTCCCGTTTTAACTCCTAATCTCAAAGGTTTTGAGGCAGCTGTTGCTGCTGGTGCAAAGGAAGTTGCCATCTTTGCCTCGGCTTCTGAGTCTTTCTCAAAATCAAACATAAATTGCAGTATTGAAGACAGTCTCAGACGTTACCGTGATGTTGCTGTTGCTGCAAAAAAGCTTTCTATTCCTGTTCGAGGATATATATCATGTGTTGTGGGGTGTCCAATAGAAGGAGCTGTAGCCCCATCTCAAGTAGCATATGTGGCCAAAGAACTTCTTGATATGGGTTGCTTTGACATTTCTCTTGGCGATACAATTGGTGTTGGTACTCCAGGTAAATGTTCTTTTCGTTGGTTGTCATTCAAGTTGCTTCTAGCTTTCGAGGCTTCTGGAGTTGCTGTGCAGACAAGGAACGGTTGTGGTTGTAAAAGCTGTTGCTGGGATTTTTGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

260

Amino Acids

27.8

Weight (kDa)

8.49

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	42 - 223	2.3e-27	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
AgsI	TTSAA	3 cut(s)	87, 458, 691
AjnI	CCWGG	2 cut(s)	45, 658
AluBI	AGCT	6 cut(s)	81, 374, 505, 563, 704, 759
AluI	AGCT	6 cut(s)	81, 374, 505, 563, 704, 759
Alw26I	GTCTC	2 cut(s)	262, 470
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	2 cut(s)	42, 591
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	371, 380, 494
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	42, 43, 143
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	367, 383, 481
BccI	CCATC	3 cut(s)	146, 410, 580
BciT130I	CCWGG	2 cut(s)	47, 660
BcoDI	GTCTC	2 cut(s)	262, 470
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	2 cut(s)	158, 564
BisI	GCNGC	3 cut(s)	372, 381, 495
BlsI	GCNGC	3 cut(s)	373, 382, 496
Bme1390I	CCNGG	2 cut(s)	47, 660
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	42, 43, 143
BmiI	GGNNCC	3 cut(s)	43, 44, 145
BmrFI	CCNGG	2 cut(s)	47, 660
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	2 cut(s)	642, 738
BpuEI	CTTGAG	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	529
BsaJI	CCNNGG	3 cut(s)	45, 147, 411
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 711, 741
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
Bse118I	RCCGGY	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	529
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	47, 660
BseDI	CCNNGG	3 cut(s)	45, 147, 411
BseGI	GGATG	3 cut(s)	111, 157, 301
BseJI	GATNNNNATC	1 cut(s)	529
BseLI	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
BseMII	CTCAG	2 cut(s)	411, 481
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	367, 383, 481
BseYI	CCCAGC	1 cut(s)	765
BsgI	GTGCAG	1 cut(s)	749
BshFI	GGCC	2 cut(s)	44, 593
BsiSI	CCGG	2 cut(s)	98, 225
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	4 cut(s)	104, 152, 521, 557
BsmAI	GTCTC	2 cut(s)	262, 470
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	44, 593
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	224
BspANI	GGCC	2 cut(s)	44, 593
BspCNI	CTCAG	2 cut(s)	412, 480
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	43, 44, 145
BspMAI	CTGCAG	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	45, 147, 411
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	47, 660
Bst4CI	ACNGT	5 cut(s)	235, 279, 464, 479, 743
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	420, 467
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	111, 157, 301
BstMAI	GTCTC	2 cut(s)	262, 470
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 87, 377, 380, 386, 407, 494, 590, 710
BstNI	CCWGG	2 cut(s)	47, 660
BstSCI	CCNGG	2 cut(s)	45, 658
BstSFI	CTRYAG	2 cut(s)	158, 564
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	367, 383, 481
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	44, 593
BtsCI	GGATG	3 cut(s)	111, 157, 301
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	3 cut(s)	42, 43, 143
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	1 cut(s)	534
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	2 cut(s)	420, 467
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoO109I	RGGNCCY	2 cut(s)	42, 43
EcoRII	CCWGG	2 cut(s)	45, 658
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	537
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	1 cut(s)	533
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	372, 381, 495
FokI	GGATG	3 cut(s)	98, 164, 308
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	372, 381, 495
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	3 cut(s)	372, 381, 495
GsaI	CCCAGC	1 cut(s)	769
GsuI	CTGGAG	2 cut(s)	642, 738
HaeIII	GGCC	2 cut(s)	44, 593
HapII	CCGG	2 cut(s)	98, 225
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	4 cut(s)	228, 271, 310, 422
HpaII	CCGG	2 cut(s)	98, 225
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	315, 421, 470
Hpy188III	TCNNGA	4 cut(s)	127, 225, 605, 717
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	5 cut(s)	235, 279, 464, 479, 743
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	6 cut(s)	160, 290, 389, 450, 497, 730
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 87, 377, 380, 386, 407, 494, 590, 710
HpyF3I	CTNAG	2 cut(s)	420, 467
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	1 cut(s)	537
Kpn2I	TCCGGA	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	29, 560
Lsp1109I	GCAGC	3 cut(s)	367, 383, 481
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	473, 776
MboII	GAAGA	2 cut(s)	75, 470
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	3 cut(s)	332, 445, 642
MluNI	TGGCCA	1 cut(s)	593
MlyI	GAGTC	2 cut(s)	222, 431
MnlI	CCTC	7 cut(s)	67, 235, 317, 361, 421, 515, 703
Mox20I	TGGCCA	1 cut(s)	593
MroI	TCCGGA	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	2 cut(s)	98, 225
MspR9I	CCNGG	2 cut(s)	47, 660
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	2 cut(s)	47, 660
MwoI	GCNNNNNNNGC	9 cut(s)	50, 87, 377, 380, 386, 407, 494, 590, 710
NaeI	GCCGGC	1 cut(s)	99
NdeI	CATATG	1 cut(s)	586
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	537
NlaIV	GGNNCC	3 cut(s)	43, 44, 145
NmeAIII	GCCGAG	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	271, 310
PkrI	GCNGC	3 cut(s)	373, 382, 496
PleI	GAGTC	2 cut(s)	222, 430
PpsI	GAGTC	2 cut(s)	222, 430
Psp6I	CCWGG	2 cut(s)	45, 658
PspFI	CCCAGC	1 cut(s)	765
PspGI	CCWGG	2 cut(s)	45, 658
PspN4I	GGNNCC	3 cut(s)	43, 44, 145
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	42, 43, 143
PstI	CTGCAG	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	3 cut(s)	372, 381, 495
Sau96I	GGNCC	3 cut(s)	42, 43, 143
SchI	GAGTC	2 cut(s)	222, 431
ScrFI	CCNGG	2 cut(s)	47, 660
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	158, 564
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	332, 445, 642
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	2 cut(s)	45, 658
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	5 cut(s)	235, 279, 464, 479, 743
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	520, 708
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	3 cut(s)	332, 445, 642
TfiI	GAWTC	2 cut(s)	271, 310
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	3 cut(s)	371, 380, 494
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.