Rh7DG319300

Hydroxymethylglutaryl-CoA lyase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
37956575 .. 37957786
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG319300.1

Sequence Viewer

Length: 1212 bp
ATGTCAAGCTTGGAGAAGCCACTTGTTTTTGATAGGATTCAGGAATTCTCTTCTAGTGTTTGCAGGTCAAGAAGAGCAGATGATGTTGAAGAAGGAACAAGTTGTAGCACATCCAATAGCCGCGAAGTAGAGTATACAAGAGACTACTTCTCTTTCAGCAAAAAGACTTGGAGCTTTGGCAGGAATCACAAGGCTTTCAGAAATGGTTTTGAATCATGGTTCTTGCCAGATGATCAATTTAACTCCAAGACCAAGTGCAATGAAAAAGATGCAACACGTAAGTTCCTGAACGGAATAAGATTACCAAAGTTTGTTAAGATAGTAGAAGTAGGTCCAAGAGACGGTCTACAAAATGAGAAGAAGATCGTATCTGCAGCTATAAAGATTGAGCTGATTCATAGGCTGATTTCTTCTGGGTTGTCTGTTGTTGAGGCTACAAGTTTTGTATCACCCAAATGGGTTCCTCAGCTAGCGGATGCAAAGGATGTAATGGAAGCGGTTCGCAATCTCGAGGGTAGTGCTACATTGCCTGTTCTGACACCTAATTTGAAAGGATTTGAAGCAGCTGTTGCAGCTGGTGCTAAGGTCGTAGCAGTCTTTGCATCAGCTTCCGAGTCATTTTCAAAGGCGAACATCAATTGTAGCGTAGAAGAGAGTCTTGTTCGTTACCGAGCTGTTACTCGTGCTGCAAAGGAGCTTTCCATTCCTGTTCGAGGGTATGTATCATGTGCCATTGGATGTCCAGAAGAGGGAGCAATTCCCCCATCAAAAGTGGCATATGTAGCAAAACAACTCTATGACATGGGCTGCTTTGAAATTTCTCTTGCCGACACGACCGGAATTGGTACCCCAACGACGGTTGTGCCAATGCTTGAAGCTGTGATGGCTGTTGTTCCTGTTGAGAAGCTAGCTGTTCATTTCCATGATACGTACGGGCATTCTCTTCCAAATATTCTTGCCTCTCTTCAAATGGGGATTGGCACAGTCGACTCCTCTGTTGCAGGTTTAGGTGGGTGTCCATATGCCAAGGGAGCTTCCGGTAACGTTGCCACTGAAGATGTTGTATACATGCTTAGTGAACTTGGTGTGGAAACCAATGTGGATTTGGCCAAGCTCCTGGTGGCTGGTGATTTCATCAGCAGGCATTTAGGTCGCCCGTCTGGTTCAAAGATCGCCATTGCCTCGAGTCCTGTAAAAGCTGATGACTCTTAG

Protein Analysis

403

Amino Acids

43.35

Weight (kDa)

6.62

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMGL-like PF00682 105 - 378 3.1e-56 HMGL-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 54, 992
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 845
AccI GTMKAC 4 cut(s) 134, 346, 987, 1065
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 121, 473, 497
AclI AACGTT 1 cut(s) 1044
AcoI YGGCCR 1 cut(s) 1107
AcsI RAATTY 2 cut(s) 44, 816
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 2 cut(s) 847, 932
AfiI CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 9 cut(s) 89, 212, 550, 560, 624, 815, 875, 968, 1167
AjnI CCWGG 1 cut(s) 1116
Alw26I GTCTC 2 cut(s) 135, 333
Ama87I CYCGRG 2 cut(s) 509, 1183
AoxI GGCC 1 cut(s) 1107
ApeKI GCWGC 5 cut(s) 374, 563, 572, 686, 807
ApoI RAATTY 2 cut(s) 44, 816
ArsI GACNNNNNNTTYG 2 cut(s) 529, 561
Asp700I GAANNNNTTC 1 cut(s) 498
Asp718I GGTACC 1 cut(s) 845
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 441, 1139
AsuNHI GCTAGC 2 cut(s) 469, 907
AvaI CYCGRG 2 cut(s) 509, 1183
AvaII GGWCC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 1109
BanI GGYRCC 1 cut(s) 845
BauI CACGAG 1 cut(s) 681
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 5 cut(s) 386, 575, 584, 673, 794
BccI CCATC 2 cut(s) 772, 877
BcgI CGANNNNNNTGC 6 cut(s) 500, 534, 844, 878, 1133, 1167
BciT130I CCWGG 1 cut(s) 1118
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 135, 333
BfaI CTAG 3 cut(s) 54, 470, 908
BfmI CTRYAG 1 cut(s) 372
BfuAI ACCTGC 2 cut(s) 54, 992
BisI GCNGC 6 cut(s) 121, 375, 564, 573, 687, 808
BlsI GCNGC 6 cut(s) 122, 376, 565, 574, 688, 809
Bme1390I CCNGG 1 cut(s) 1118
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 2 cut(s) 509, 1183
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 2 cut(s) 462, 847
BmrFI CCNGG 1 cut(s) 1118
BmsI GCATC 3 cut(s) 259, 466, 611
BmtI GCTAGC 2 cut(s) 473, 911
Bpu10I CCTNAGC 2 cut(s) 465, 582
BsaAI YACGTR 2 cut(s) 278, 930
BsaJI CCNNGG 1 cut(s) 1026
BsaWI WCCGGW 2 cut(s) 836, 1037
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
Bse3DI GCAATG 3 cut(s) 265, 524, 1176
BseBI CCWGG 1 cut(s) 1118
BseDI CCNNGG 1 cut(s) 1026
BseGI GGATG 4 cut(s) 110, 481, 490, 743
BseLI CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
BseMI GCAATG 3 cut(s) 265, 524, 1176
BseMII CTCAG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 982
BseXI GCAGC 5 cut(s) 386, 575, 584, 673, 794
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 837
BshFI GGCC 1 cut(s) 1109
BshNI GGYRCC 1 cut(s) 845
BsiEI CGRYCG 1 cut(s) 837
BsiHKCI CYCGRG 2 cut(s) 509, 1183
BsiSI CCGG 2 cut(s) 837, 1038
BsiWI CGTACG 1 cut(s) 930
BslI CCNNNNNNNGG 4 cut(s) 341, 713, 749, 856
BsmAI GTCTC 2 cut(s) 135, 333
BsmBI CGTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 1 cut(s) 1109
BsoBI CYCGRG 2 cut(s) 509, 1183
Bsp143I GATC 3 cut(s) 232, 363, 1170
BspACI CCGC 3 cut(s) 121, 473, 497
BspANI GGCC 1 cut(s) 1109
BspCNI CTCAG 1 cut(s) 478
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 462, 847
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 2 cut(s) 54, 992
BspOI GCTAGC 2 cut(s) 473, 911
BspQI GCTCTTC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 845
BsrDI GCAATG 3 cut(s) 265, 524, 1176
BssECI CCNNGG 1 cut(s) 1026
BssMI GATC 3 cut(s) 232, 363, 1170
BssNAI GTATAC 2 cut(s) 135, 1066
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 1 cut(s) 1026
Bst1107I GTATAC 2 cut(s) 135, 1066
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 3 cut(s) 344, 859, 985
Bst6I CTCTTC 6 cut(s) 55, 67, 645, 741, 948, 969
BstAPI GCANNNNNTGC 3 cut(s) 569, 578, 599
BstBAI YACGTR 2 cut(s) 278, 930
BstC8I GCNNGC 3 cut(s) 471, 909, 1142
BstDEI CTNAG 4 cut(s) 465, 582, 1073, 1209
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 4 cut(s) 110, 481, 490, 743
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 235, 366, 1173
BstMAI GTCTC 2 cut(s) 135, 333
BstMBI GATC 3 cut(s) 232, 363, 1170
BstMCI CGRYCG 1 cut(s) 837
BstMWI GCNNNNNNNGC 7 cut(s) 569, 572, 578, 599, 782, 884, 1031
BstNI CCWGG 1 cut(s) 1118
BstNSI RCATGY 1 cut(s) 1072
BstSCI CCNGG 1 cut(s) 1116
BstSFI CTRYAG 1 cut(s) 372
BstSNI TACGTA 1 cut(s) 930
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 386, 575, 584, 673, 794
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstZ17I GTATAC 2 cut(s) 135, 1066
BsuRI GGCC 1 cut(s) 1109
BtsCI GGATG 4 cut(s) 110, 481, 490, 743
BtsIMutI CAGTG 1 cut(s) 1050
BveI ACCTGC 2 cut(s) 54, 992
Cac8I GCNNGC 3 cut(s) 471, 909, 1142
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 846, 931
CviAII CATG 5 cut(s) 216, 726, 802, 923, 1069
CviQI GTAC 2 cut(s) 846, 931
DdeI CTNAG 4 cut(s) 465, 582, 1073, 1209
DpnI GATC 3 cut(s) 234, 365, 1172
DpnII GATC 3 cut(s) 232, 363, 1170
EaeI YGGCCR 1 cut(s) 1107
Eam1104I CTCTTC 6 cut(s) 55, 67, 645, 741, 948, 969
EarI CTCTTC 6 cut(s) 55, 67, 645, 741, 948, 969
Eco105I TACGTA 1 cut(s) 930
Eco130I CCWWGG 1 cut(s) 1026
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 1074
Eco88I CYCGRG 2 cut(s) 509, 1183
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 1116
EcoT14I CCWWGG 1 cut(s) 1026
ErhI CCWWGG 1 cut(s) 1026
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 5 cut(s) 219, 729, 805, 926, 1072
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 5 cut(s) 215, 725, 801, 922, 1068
FauNDI CATATG 2 cut(s) 778, 1021
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 4 cut(s) 134, 346, 987, 1065
Fnu4HI GCNGC 6 cut(s) 121, 375, 564, 573, 687, 808
FokI GGATG 4 cut(s) 97, 488, 497, 750
Fsp4HI GCNGC 6 cut(s) 121, 375, 564, 573, 687, 808
FspBI CTAG 3 cut(s) 54, 470, 908
GluI GCNGC 6 cut(s) 121, 375, 564, 573, 687, 808
HaeIII GGCC 1 cut(s) 1109
HapII CCGG 2 cut(s) 837, 1038
Hin1II CATG 5 cut(s) 219, 729, 805, 926, 1072
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 9 cut(s) 37, 184, 212, 394, 614, 655, 989, 1186, 1205
HpaII CCGG 2 cut(s) 837, 1038
HphI GGTGA 2 cut(s) 441, 1139
Hpy166II GTNNAC 5 cut(s) 135, 347, 988, 1066, 1079
Hpy188I TCNGA 3 cut(s) 200, 537, 613
Hpy188III TCNNGA 5 cut(s) 41, 69, 286, 509, 743
Hpy8I GTNNAC 5 cut(s) 135, 347, 988, 1066, 1079
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 3 cut(s) 344, 859, 985
HpyCH4IV ACGT 3 cut(s) 277, 929, 1044
HpyCH4V TGCA 9 cut(s) 63, 258, 272, 374, 479, 572, 602, 689, 1001
HpyF10VI GCNNNNNNNGC 7 cut(s) 569, 572, 578, 599, 782, 884, 1031
HpyF3I CTNAG 4 cut(s) 465, 582, 1073, 1209
HpySE526I ACGT 3 cut(s) 277, 929, 1044
Hsp92II CATG 5 cut(s) 219, 729, 805, 926, 1072
KpnI GGTACC 1 cut(s) 849
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 232, 363, 1170
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 5 cut(s) 171, 694, 752, 1031, 1119
Lsp1109I GCAGC 5 cut(s) 386, 575, 584, 673, 794
LweI GCATC 3 cut(s) 259, 466, 611
MaeI CTAG 3 cut(s) 54, 470, 908
MaeII ACGT 3 cut(s) 277, 929, 1044
MaeIII GTNAC 3 cut(s) 665, 676, 1040
MalI GATC 3 cut(s) 234, 365, 1172
MboI GATC 3 cut(s) 232, 363, 1170
MfeI CAATTG 1 cut(s) 637
MlsI TGGCCA 1 cut(s) 1109
MluCI AATT 7 cut(s) 44, 236, 544, 637, 756, 816, 840
MluNI TGGCCA 1 cut(s) 1109
MlyI GAGTC 5 cut(s) 623, 664, 983, 1195, 1199
MnlI CCTC 8 cut(s) 424, 474, 505, 707, 742, 970, 1003, 1192
Mox20I TGGCCA 1 cut(s) 1109
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 1109
MseI TTAA 2 cut(s) 240, 315
MslI CAYNNNNRTG 2 cut(s) 454, 921
Msp20I TGGCCA 1 cut(s) 1109
MspA1I CMGCKG 2 cut(s) 566, 575
MspI CCGG 2 cut(s) 837, 1038
MspR9I CCNGG 1 cut(s) 1118
MunI CAATTG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 1118
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 7 cut(s) 569, 572, 578, 599, 782, 884, 1031
NdeI CATATG 2 cut(s) 778, 1021
NdeII GATC 3 cut(s) 232, 363, 1170
NheI GCTAGC 2 cut(s) 469, 907
NlaIII CATG 5 cut(s) 219, 729, 805, 926, 1072
NlaIV GGNNCC 2 cut(s) 462, 847
NspI RCATGY 1 cut(s) 1072
PaeR7I CTCGAG 2 cut(s) 509, 1183
PciSI GCTCTTC 1 cut(s) 67
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 37, 184, 212, 394
Pfl23II CGTACG 1 cut(s) 930
PkrI GCNGC 6 cut(s) 122, 376, 565, 574, 688, 809
PleI GAGTC 5 cut(s) 622, 663, 983, 1194, 1199
PpsI GAGTC 5 cut(s) 622, 663, 983, 1194, 1199
Ppu21I YACGTR 2 cut(s) 278, 930
Psp1406I AACGTT 1 cut(s) 1044
Psp6I CCWGG 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1116
PspLI CGTACG 1 cut(s) 930
PspN4I GGNNCC 2 cut(s) 462, 847
PspPI GGNCC 1 cut(s) 332
PspXI VCTCGAGB 1 cut(s) 1183
PstI CTGCAG 1 cut(s) 376
PvuII CAGCTG 2 cut(s) 566, 575
RsaI GTAC 2 cut(s) 847, 932
RsaNI GTAC 2 cut(s) 846, 931
RseI CAYNNNNRTG 2 cut(s) 454, 921
SalI GTCGAC 1 cut(s) 986
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 240, 315
SatI GCNGC 6 cut(s) 121, 375, 564, 573, 687, 808
Sau3AI GATC 3 cut(s) 232, 363, 1170
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 5 cut(s) 623, 664, 983, 1195, 1199
ScrFI CCNGG 1 cut(s) 1118
SfaNI GCATC 3 cut(s) 259, 466, 611
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 2 cut(s) 509, 1183
SinI GGWCC 1 cut(s) 332
SlaI CTCGAG 2 cut(s) 509, 1183
SmiMI CAYNNNNRTG 2 cut(s) 454, 921
SmlI CTYRAG 2 cut(s) 509, 1183
SmoI CTYRAG 2 cut(s) 509, 1183
SnaBI TACGTA 1 cut(s) 930
Sse9I AATT 7 cut(s) 44, 236, 544, 637, 756, 816, 840
SsiI CCGC 3 cut(s) 121, 473, 497
SspI AATATT 1 cut(s) 952
SspMI CTAG 3 cut(s) 54, 470, 908
StyD4I CCNGG 1 cut(s) 1116
StyI CCWWGG 1 cut(s) 1026
TaaI ACNGT 3 cut(s) 344, 859, 985
TaiI ACGT 3 cut(s) 280, 932, 1047
TaqI TCGA 4 cut(s) 510, 712, 987, 1184
TasI AATT 7 cut(s) 44, 236, 544, 637, 756, 816, 840
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 4 cut(s) 37, 184, 212, 394
Tru1I TTAA 2 cut(s) 240, 315
Tru9I TTAA 2 cut(s) 240, 315
TscAI CASTG 1 cut(s) 1057
TseI GCWGC 5 cut(s) 374, 563, 572, 686, 807
TspDTI ATGAA 4 cut(s) 276, 386, 905, 1123
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 1057
VpaK11BI GGWCC 1 cut(s) 332
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 2 cut(s) 44, 816
XceI RCATGY 1 cut(s) 1072
XcmI CCANNNNNNNNNTGG 2 cut(s) 1102, 1117
XhoI CTCGAG 2 cut(s) 509, 1183
XmiI GTMKAC 4 cut(s) 134, 346, 987, 1065
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 3 cut(s) 54, 470, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.