Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

5721904 .. 5730764

Gene Structure 8861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G031100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTTTGCTTTGCATGAGATGTCAAGACAAATGAGGACTGTGTGTAAGAACGGAGCAGTGTCAGGATTTGGTGGGTTTTTAAGGGCAGCTGGTAATGATGTTGAGGGCCTTGAGGCTTCATATTCGTCAATTCGTCGTTTAAGCTCCAATTGGAATCAAAGTTCCACAAAGGAGCCAATCAGTAATCTGTTGAAAAACATTCCAGAATTTGTGAAGATAGTGGAAGTTGGTCCAAGGGATGGACTTCAGAATGAGAAGCACATTGTTCCTACTGCCGTGAAGGTTAAATTGATTGAAATGCTGGTTGCTTCAGGATTGGATGTTGTTGAGGCTACAAGTTTTGTCTCACCCAAATGGGTTCCGCAGCTGGCAGATGCCAAAGATGTAATGAAGGCGATTCGGAATGTTGAAGGTGTTAGATTTCCCGTCTTAACTCCTAATCTTAAAGGATTTGAGGCGGCTGTTGCTGCTGGTGCAAAGGAAGTTGCCATCTTTGCCTCAGCTTCTGAGTCTTTTTCAAAATCAAATATAAATTGCAGTATTGAAGATAGTCTCATTCGTTACCATGATGTTGCTACTGCTGCTACAAAGCTTTCAATTCCTGTTCGTGGGTACATATCATGTGTTGTGGGGTGTCCAGTGGAAGGAACAGTACTTCCATCACAAGTAGCATATGTGGCCAAAAAACTTTATAATATGGGTTGCTCTGACATTTCTCTCGGTGATACGATTGGTGTTGGTACTCCAGGAACTATCATTCCAATGCTTGAGGCTGTTACTGATGTGGTCCCCACTGACAAACTTGCTGTCCATTATCATGACACTTATGGGCAAGCTCTTTCAAACATACTTGCATCACTCCAGATGGGGATCAGCACAGTGGATTCATCTGTCTCAGGTCTTGGGGGTTGTCCATATGCCAAAGGTGCTTCTGGAAATGTTGCCACGGAGGATGTCGTGTACATGCTAAATGGACTTGGAGTGAAGACAAACGTAGATCTTAAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACTTGGGGCGCTCATCTGGTTCAAAGACAGCAGTTGCCATGAGTAAAGTTACAGCTCATGCTTCTAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

371

Amino Acids

39.06

Weight (kDa)

8.36

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AccB7I	CCANNNNNTGG	1 cut(s)	239
AciI	CCGC	2 cut(s)	362, 458
AclWI	GGATC	1 cut(s)	878
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	2 cut(s)	230, 294
AfaI	GTAC	4 cut(s)	614, 654, 742, 962
AfiI	CCNNNNNNNGG	3 cut(s)	239, 608, 644
AgsI	TTSAA	8 cut(s)	193, 296, 410, 519, 545, 597, 843, 1062
AjnI	CCWGG	1 cut(s)	745
AloI	GAACNNNNNNTCC	6 cut(s)	145, 177, 640, 672, 742, 774
AluBI	AGCT	9 cut(s)	89, 144, 367, 503, 592, 836, 1009, 1094, 1108
AluI	AGCT	9 cut(s)	89, 144, 367, 503, 592, 836, 1009, 1094, 1108
Alw26I	GTCTC	3 cut(s)	349, 557, 898
AlwI	GGATC	1 cut(s)	878
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	106, 678
ApeKI	GCWGC	4 cut(s)	86, 364, 467, 581
ApoI	RAATTY	1 cut(s)	206
ArsI	GACNNNNNNTTYG	2 cut(s)	792, 824
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	3 cut(s)	106, 230, 787
AsuHPI	GGTGA	2 cut(s)	339, 734
AvaII	GGWCC	2 cut(s)	230, 787
BalI	TGGCCA	1 cut(s)	680
BarI	GAAGNNNNNNTAC	2 cut(s)	636, 668
BbsI	GAAGAC	1 cut(s)	992
BbvCI	CCTCAGC	1 cut(s)	499
BbvI	GCAGC	4 cut(s)	98, 376, 454, 568
BccI	CCATC	4 cut(s)	233, 497, 667, 859
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	349, 557, 898
BfoI	RGCGCY	1 cut(s)	1051
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	5 cut(s)	87, 365, 459, 468, 582
BlsI	GCNGC	5 cut(s)	88, 366, 460, 469, 583
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	2 cut(s)	230, 787
BmgT120I	GGNCC	3 cut(s)	106, 230, 787
BmiI	GGNNCC	3 cut(s)	174, 360, 789
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	364, 863
BpiI	GAAGAC	1 cut(s)	992
BpmI	CTGGAG	2 cut(s)	729, 845
Bpu10I	CCTNAGC	1 cut(s)	499
BpuEI	CTTGAG	2 cut(s)	131, 788
BsaBI	GATNNNNATC	1 cut(s)	869
BsaJI	CCNNGG	2 cut(s)	233, 945
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 608, 644
Bse1I	ACTGG	1 cut(s)	638
Bse8I	GATNNNNATC	1 cut(s)	869
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	233, 945
BseGI	GGATG	3 cut(s)	244, 325, 958
BseJI	GATNNNNATC	1 cut(s)	869
BseLI	CCNNNNNNNGG	3 cut(s)	239, 608, 644
BseMII	CTCAG	3 cut(s)	498, 513, 909
BseNI	ACTGG	1 cut(s)	638
BseXI	GCAGC	4 cut(s)	98, 376, 454, 568
BseYI	CCCAGC	1 cut(s)	1019
BshFI	GGCC	2 cut(s)	108, 680
BslFI	GGGAC	2 cut(s)	773, 1037
BslI	CCNNNNNNNGG	3 cut(s)	239, 608, 644
BsmAI	GTCTC	3 cut(s)	349, 557, 898
BsmFI	GGGAC	2 cut(s)	773, 1037
BsnI	GGCC	2 cut(s)	108, 680
Bsp1407I	TGTACA	1 cut(s)	960
Bsp143I	GATC	2 cut(s)	870, 997
BspACI	CCGC	2 cut(s)	362, 458
BspANI	GGCC	2 cut(s)	108, 680
BspCNI	CTCAG	3 cut(s)	499, 512, 908
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	3 cut(s)	174, 360, 789
BspPI	GGATC	1 cut(s)	878
BsrGI	TGTACA	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	233, 945
BssMI	GATC	2 cut(s)	870, 997
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	40, 652, 880
BstAUI	TGTACA	1 cut(s)	960
BstC8I	GCNNGC	3 cut(s)	369, 834, 1037
BstDEI	CTNAG	4 cut(s)	499, 507, 895, 1104
BstDSI	CCRYGG	1 cut(s)	945
BstF5I	GGATG	3 cut(s)	244, 325, 958
BstH2I	RGCGCY	1 cut(s)	1051
BstHHI	GCGC	1 cut(s)	1050
BstKTI	GATC	2 cut(s)	873, 1000
BstMAI	GTCTC	3 cut(s)	349, 557, 898
BstMBI	GATC	2 cut(s)	870, 997
BstMWI	GCNNNNNNNGC	8 cut(s)	464, 467, 473, 494, 581, 677, 926, 1045
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	967
BstSCI	CCNGG	1 cut(s)	745
BstV1I	GCAGC	4 cut(s)	98, 376, 454, 568
BstV2I	GAAGAC	1 cut(s)	992
BstX2I	RGATCY	1 cut(s)	997
BstYI	RGATCY	1 cut(s)	997
BsuRI	GGCC	2 cut(s)	108, 680
BtgI	CCRYGG	1 cut(s)	945
BtsCI	GGATG	3 cut(s)	244, 325, 958
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	4 cut(s)	63, 645, 792, 885
Cac8I	GCNNGC	3 cut(s)	369, 834, 1037
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	3 cut(s)	106, 230, 787
Csp6I	GTAC	4 cut(s)	613, 653, 741, 961
CviAII	CATG	8 cut(s)	14, 566, 621, 818, 964, 1012, 1078, 1097
CviQI	GTAC	4 cut(s)	613, 653, 741, 961
DdeI	CTNAG	4 cut(s)	499, 507, 895, 1104
DpnI	GATC	2 cut(s)	872, 999
DpnII	GATC	2 cut(s)	870, 997
EaeI	YGGCCR	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	230, 787
Eco57I	CTGAAG	2 cut(s)	230, 294
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	8 cut(s)	17, 569, 624, 821, 967, 1015, 1081, 1100
FaqI	GGGAC	2 cut(s)	773, 1037
FatI	CATG	8 cut(s)	13, 565, 620, 817, 963, 1011, 1077, 1096
FauNDI	CATATG	2 cut(s)	673, 916
Fnu4HI	GCNGC	5 cut(s)	87, 365, 459, 468, 582
FokI	GGATG	3 cut(s)	251, 332, 965
Fsp4HI	GCNGC	5 cut(s)	87, 365, 459, 468, 582
GlaI	GCGC	1 cut(s)	1049
GluI	GCNGC	5 cut(s)	87, 365, 459, 468, 582
GsaI	CCCAGC	1 cut(s)	1023
GsuI	CTGGAG	2 cut(s)	729, 845
HaeII	RGCGCY	1 cut(s)	1051
HaeIII	GGCC	2 cut(s)	108, 680
HhaI	GCGC	1 cut(s)	1050
Hin1II	CATG	8 cut(s)	17, 569, 624, 821, 967, 1015, 1081, 1100
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	154, 397, 509, 884
HphI	GGTGA	2 cut(s)	339, 734
Hpy166II	GTNNAC	1 cut(s)	961
Hpy188I	TCNGA	4 cut(s)	249, 402, 508, 709
Hpy188III	TCNNGA	7 cut(s)	24, 63, 203, 312, 818, 862, 933
Hpy8I	GTNNAC	1 cut(s)	961
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	4 cut(s)	274, 385, 404, 638
HpyCH4III	ACNGT	3 cut(s)	40, 652, 880
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	5 cut(s)	13, 476, 537, 854, 1035
HpyF10VI	GCNNNNNNNGC	8 cut(s)	464, 467, 473, 494, 581, 677, 926, 1045
HpyF3I	CTNAG	4 cut(s)	499, 507, 895, 1104
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	8 cut(s)	17, 569, 624, 821, 967, 1015, 1081, 1100
HspAI	GCGC	1 cut(s)	1048
Kzo9I	GATC	2 cut(s)	870, 997
LmnI	GCTCC	3 cut(s)	53, 149, 172
Lsp1109I	GCAGC	4 cut(s)	98, 376, 454, 568
LweI	GCATC	2 cut(s)	364, 863
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	3 cut(s)	560, 775, 1087
MalI	GATC	2 cut(s)	872, 999
MboI	GATC	2 cut(s)	870, 997
MboII	GAAGA	3 cut(s)	226, 557, 997
MfeI	CAATTG	1 cut(s)	148
MflI	RGATCY	1 cut(s)	997
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	6 cut(s)	129, 148, 206, 287, 532, 597
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	8 cut(s)	27, 97, 106, 322, 448, 508, 763, 943
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	6 cut(s)	80, 140, 285, 431, 444, 1002
MslI	CAYNNNNRTG	3 cut(s)	352, 761, 816
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	2 cut(s)	89, 367
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	8 cut(s)	464, 467, 473, 494, 581, 677, 926, 1045
NdeI	CATATG	2 cut(s)	673, 916
NdeII	GATC	2 cut(s)	870, 997
NlaIII	CATG	8 cut(s)	17, 569, 624, 821, 967, 1015, 1081, 1100
NlaIV	GGNNCC	3 cut(s)	174, 360, 789
NspI	RCATGY	1 cut(s)	967
PagI	TCATGA	1 cut(s)	817
PfeI	GAWTC	3 cut(s)	154, 397, 884
PflMI	CCANNNNNTGG	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	5 cut(s)	88, 366, 460, 469, 583
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	745
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	3 cut(s)	174, 360, 789
PspPI	GGNCC	3 cut(s)	106, 230, 787
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	997
PvuII	CAGCTG	2 cut(s)	89, 367
RsaI	GTAC	4 cut(s)	614, 654, 742, 962
RsaNI	GTAC	4 cut(s)	613, 653, 741, 961
RseI	CAYNNNNRTG	3 cut(s)	352, 761, 816
SaqAI	TTAA	6 cut(s)	80, 140, 285, 431, 444, 1002
SatI	GCNGC	5 cut(s)	87, 365, 459, 468, 582
Sau3AI	GATC	2 cut(s)	870, 997
Sau96I	GGNCC	3 cut(s)	106, 230, 787
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	747
SfaNI	GCATC	2 cut(s)	364, 863
SinI	GGWCC	2 cut(s)	230, 787
SmiMI	CAYNNNNRTG	3 cut(s)	352, 761, 816
SmlI	CTYRAG	2 cut(s)	110, 767
SmoI	CTYRAG	2 cut(s)	110, 767
Sse9I	AATT	6 cut(s)	129, 148, 206, 287, 532, 597
SsiI	CCGC	2 cut(s)	362, 458
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	3 cut(s)	40, 652, 880
TaiI	ACGT	1 cut(s)	996
TasI	AATT	6 cut(s)	129, 148, 206, 287, 532, 597
TatI	WGTACW	2 cut(s)	652, 960
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	154, 397, 884
Tru1I	TTAA	6 cut(s)	80, 140, 285, 431, 444, 1002
Tru9I	TTAA	6 cut(s)	80, 140, 285, 431, 444, 1002
TscAI	CASTG	4 cut(s)	63, 645, 799, 885
TseI	GCWGC	4 cut(s)	86, 364, 467, 581
TspDTI	ATGAA	3 cut(s)	108, 404, 876
TspGWI	ACGGA	2 cut(s)	66, 962
TspRI	CASTG	4 cut(s)	63, 645, 799, 885
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	230, 787
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	967
ZrmI	AGTACT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.