Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000293.1

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

159587 .. 160155

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000293.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgaggaggaatgtgtactacaggaatgaagcagttgcaggggcccttgaccctttctctttgtcaactcatcatataagctcttcaagcaataagccggcattacgaaacatcccagagtttgtcaagatagtagaagtctgtcccagggatggactgcagaatgagaagcagattattcctactgatgtagaggttaggttcatagaaatgctagtttcgtccggactcactgttgttgaggctacaagttttgtctcacccaaatggattccacagatcagtgatatcgctgtggtgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

101

Amino Acids

11.32

Weight (kDa)

6.07

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	224
AfaI	GTAC	2 cut(s)	17, 302
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	1 cut(s)	42
ApaI	GGGCCC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	42, 43
AsuHPI	GGTGA	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	46
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	215, 304
BfmI	CTRYAG	2 cut(s)	19, 158
Bme1390I	CCNGG	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	42, 43
BmiI	GGNNCC	2 cut(s)	43, 44
BmrFI	CCNGG	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	146, 147
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	146, 147
BseGI	GGATG	2 cut(s)	111, 157
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	98, 225
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	44
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	43, 44
BspMAI	CTGCAG	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	146, 147
BssMI	GATC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	111, 157
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	19, 158
BstSLI	GKGCMC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	111, 157
BtsIMutI	CAGTG	2 cut(s)	231, 289
Cac8I	GCNNGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	42, 43
Csp6I	GTAC	2 cut(s)	16, 301
CviJI	RGCY	4 cut(s)	44, 81, 97, 245
CviKI_1	RGCY	4 cut(s)	44, 81, 97, 245
CviQI	GTAC	2 cut(s)	16, 301
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	289
EcoO109I	RGGNCCY	2 cut(s)	42, 43
EcoRII	CCWGG	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	46
FaiI	YATR	3 cut(s)	75, 77, 206
FaqI	GGGAC	1 cut(s)	129
FokI	GGATG	2 cut(s)	98, 164
FriOI	GRGCYC	1 cut(s)	46
FspBI	CTAG	2 cut(s)	215, 304
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	98, 225
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	228, 271
HpaII	CCGG	2 cut(s)	98, 225
HphI	GGTGA	1 cut(s)	252
Hpy166II	GTNNAC	3 cut(s)	16, 66, 301
Hpy188III	TCNNGA	2 cut(s)	127, 225
Hpy8I	GTNNAC	3 cut(s)	16, 66, 301
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	38, 160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
Kpn2I	TCCGGA	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	279
LguI	GCTCTTC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	7, 24, 111, 129, 133, 160, 238
MaeI	CTAG	2 cut(s)	215, 304
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	187, 235
MroI	TCCGGA	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	97
MslI	CAYNNNNRTG	2 cut(s)	209, 265
MspI	CCGG	2 cut(s)	98, 225
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	87
NaeI	GCCGGC	1 cut(s)	99
NdeII	GATC	1 cut(s)	279
NgoMIV	GCCGGC	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	43, 44
PasI	CCCWGGG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	43, 44
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	42, 43
PstI	CTGCAG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	17, 302
RsaNI	GTAC	2 cut(s)	16, 301
RseI	CAYNNNNRTG	2 cut(s)	209, 265
SapI	GCTCTTC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	2 cut(s)	42, 43
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	3 cut(s)	83, 198, 203
SfcI	CTRYAG	2 cut(s)	19, 158
SmiMI	CAYNNNNRTG	2 cut(s)	209, 265
SspMI	CTAG	2 cut(s)	215, 304
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	235
TatI	WGTACW	2 cut(s)	15, 300
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	2 cut(s)	238, 289
TspDTI	ATGAA	2 cut(s)	42, 193
TspRI	CASTG	2 cut(s)	238, 289
XspI	CTAG	2 cut(s)	215, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.