Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

12767474 .. 12775776

Gene Structure 8303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAAGGGAGCCATACAGGTGTCATTTGGTCATTAAATGAGCCATACCAGGTAGGTGCGGCGGAGCCGGCAATAGGAAACATCCCAGAGTTTGTCAAGATAGTAGAAGTCGGTCCCAGGGATGGACCGCAGAATGAGAAGCAGATTATTCCTACTGATGTAAAGGTTAGGTTCATAGAAATGCTTGTTTCATCCGGACTCACTGTTGTTGAGGCTACAAGTTTTGTCTCGCCCCAATGGATTCCACAGCTGGCAGATGCAAAGGATGTAATGGCAGCGATTCGGAATATGGGAGGTGCTAAATTTCCCGTTTTAACTCCTAATCTCAAAGGTTTTGAGGCGGCTGTTGCTGCTGGTGCAAAGGAAGTTGCCATCTTTGCCTCAGCTTCTGAGTCTTTCTCAAAATCAAATATAAATTGCAGTATTGAAGACAGTCTCAGACATTACCGTGATGTTGCTGTTGCTGCAAAAAAGCTTTCTATTCCTCCATTTAATGATCTTGCTAGATATATATCATGTGTTGTGGGGTGTCCAATAGAAGGAGCTGTAGCCCCATCTCAAGTAGCATATGTGGCCAAAGAACTTCTTGATATGGGTTGCTTTGACATTTCTCTTGGCGATAGAATTGGTGTTGGTACTCCAGACCCTAGCATTTCTAGATCTTCTTACAAGGACGAAGAAAAGAAAATTCCACTAATGACCCAGGAAGAAATCCAGAGTCGGGAGAAAGATGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

246

Amino Acids

26.44

Weight (kDa)

5.12

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	32 - 215	2.2e-26	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	4 cut(s)	59, 62, 128, 341
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	2 cut(s)	302, 687
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	4 cut(s)	74, 122, 539, 721
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	3 cut(s)	48, 116, 702
AluBI	AGCT	4 cut(s)	250, 386, 475, 545
AluI	AGCT	4 cut(s)	250, 386, 475, 545
Alw26I	GTCTC	2 cut(s)	232, 440
AlwNI	CAGNNNCTG	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	275, 350, 464
ApoI	RAATTY	2 cut(s)	302, 687
AspS9I	GGNCC	2 cut(s)	113, 125
AvaII	GGWCC	2 cut(s)	113, 125
BalI	TGGCCA	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	435
BbvCI	CCTCAGC	1 cut(s)	382
BbvI	GCAGC	3 cut(s)	287, 337, 451
BccI	CCATC	4 cut(s)	116, 380, 562, 725
BciT130I	CCWGG	3 cut(s)	50, 118, 704
BcoDI	GTCTC	2 cut(s)	232, 440
BfaI	CTAG	3 cut(s)	504, 648, 657
BfmI	CTRYAG	1 cut(s)	546
BglII	AGATCT	1 cut(s)	659
BisI	GCNGC	5 cut(s)	60, 276, 342, 351, 465
BlsI	GCNGC	5 cut(s)	61, 277, 343, 352, 466
Bme1390I	CCNGG	3 cut(s)	50, 118, 704
Bme18I	GGWCC	2 cut(s)	113, 125
BmgT120I	GGNCC	2 cut(s)	113, 125
BmiI	GGNNCC	3 cut(s)	11, 66, 115
BmrFI	CCNGG	3 cut(s)	50, 118, 704
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	116, 117, 702
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 122, 539, 721
Bse118I	RCCGGY	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	511
BseAI	TCCGGA	1 cut(s)	194
BseBI	CCWGG	3 cut(s)	50, 118, 704
BseDI	CCNNGG	3 cut(s)	116, 117, 702
BseGI	GGATG	4 cut(s)	81, 127, 191, 271
BseJI	GATNNNNATC	1 cut(s)	511
BseLI	CCNNNNNNNGG	4 cut(s)	74, 122, 539, 721
BseMII	CTCAG	3 cut(s)	381, 396, 451
BseXI	GCAGC	3 cut(s)	287, 337, 451
BshFI	GGCC	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	68, 195
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	4 cut(s)	74, 122, 539, 721
BsmAI	GTCTC	2 cut(s)	232, 440
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	575
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	496, 659
BspACI	CCGC	4 cut(s)	59, 62, 128, 341
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	3 cut(s)	382, 395, 450
BspEI	TCCGGA	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	11, 66, 115
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	116, 117, 702
BssMI	GATC	2 cut(s)	496, 659
Bst2UI	CCWGG	3 cut(s)	50, 118, 704
Bst4CI	ACNGT	4 cut(s)	205, 434, 449, 738
BstC8I	GCNNGC	2 cut(s)	69, 252
BstDEI	CTNAG	3 cut(s)	382, 390, 437
BstF5I	GGATG	4 cut(s)	81, 127, 191, 271
BstKTI	GATC	2 cut(s)	499, 662
BstMAI	GTCTC	2 cut(s)	232, 440
BstMBI	GATC	2 cut(s)	496, 659
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 347, 350, 356, 377, 464, 572
BstNI	CCWGG	3 cut(s)	50, 118, 704
BstSCI	CCNGG	3 cut(s)	48, 116, 702
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	287, 337, 451
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	1 cut(s)	575
BtsCI	GGATG	4 cut(s)	81, 127, 191, 271
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	69, 252
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	113, 125
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	1 cut(s)	516
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	3 cut(s)	382, 390, 437
DpnI	GATC	2 cut(s)	498, 661
DpnII	GATC	2 cut(s)	496, 659
EaeI	YGGCCR	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	113, 125
EcoRII	CCWGG	3 cut(s)	48, 116, 702
FaeI	CATG	1 cut(s)	519
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	515
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	5 cut(s)	60, 276, 342, 351, 465
FokI	GGATG	4 cut(s)	68, 134, 178, 278
Fsp4HI	GCNGC	5 cut(s)	60, 276, 342, 351, 465
FspBI	CTAG	3 cut(s)	504, 648, 657
GluI	GCNGC	5 cut(s)	60, 276, 342, 351, 465
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	2 cut(s)	68, 195
Hin1II	CATG	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	5 cut(s)	198, 241, 280, 392, 718
HpaII	CCGG	2 cut(s)	68, 195
Hpy188I	TCNGA	3 cut(s)	285, 391, 440
Hpy188III	TCNNGA	7 cut(s)	97, 195, 587, 641, 657, 715, 722
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	4 cut(s)	205, 434, 449, 738
HpyCH4V	TGCA	4 cut(s)	260, 359, 420, 467
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 347, 350, 356, 377, 464, 572
HpyF3I	CTNAG	3 cut(s)	382, 390, 437
Hsp92II	CATG	1 cut(s)	519
Kpn2I	TCCGGA	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	496, 659
LmnI	GCTCC	3 cut(s)	9, 64, 542
Lsp1109I	GCAGC	3 cut(s)	287, 337, 451
LweI	GCATC	1 cut(s)	247
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	3 cut(s)	504, 648, 657
MalI	GATC	2 cut(s)	498, 661
MboI	GATC	2 cut(s)	496, 659
MboII	GAAGA	4 cut(s)	440, 654, 689, 719
MflI	RGATCY	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	4 cut(s)	302, 415, 624, 687
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	3 cut(s)	192, 401, 727
MnlI	CCTC	5 cut(s)	205, 287, 331, 391, 495
Mox20I	TGGCCA	1 cut(s)	575
MroI	TCCGGA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	3 cut(s)	35, 314, 492
MslI	CAYNNNNRTG	3 cut(s)	18, 179, 447
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	2 cut(s)	68, 195
MspR9I	CCNGG	3 cut(s)	50, 118, 704
MvaI	CCWGG	3 cut(s)	50, 118, 704
MwoI	GCNNNNNNNGC	7 cut(s)	68, 347, 350, 356, 377, 464, 572
NaeI	GCCGGC	1 cut(s)	69
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	2 cut(s)	496, 659
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	3 cut(s)	11, 66, 115
PasI	CCCWGGG	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	241, 280
PkrI	GCNGC	5 cut(s)	61, 277, 343, 352, 466
PleI	GAGTC	3 cut(s)	192, 400, 726
PpsI	GAGTC	3 cut(s)	192, 400, 726
Psp6I	CCWGG	3 cut(s)	48, 116, 702
PspGI	CCWGG	3 cut(s)	48, 116, 702
PspN4I	GGNNCC	3 cut(s)	11, 66, 115
PspPI	GGNCC	2 cut(s)	113, 125
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
RseI	CAYNNNNRTG	3 cut(s)	18, 179, 447
SaqAI	TTAA	3 cut(s)	35, 314, 492
SatI	GCNGC	5 cut(s)	60, 276, 342, 351, 465
Sau3AI	GATC	2 cut(s)	496, 659
Sau96I	GGNCC	2 cut(s)	113, 125
SchI	GAGTC	3 cut(s)	192, 401, 727
ScrFI	CCNGG	3 cut(s)	50, 118, 704
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	113, 125
SmiMI	CAYNNNNRTG	3 cut(s)	18, 179, 447
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	4 cut(s)	302, 415, 624, 687
SsiI	CCGC	4 cut(s)	59, 62, 128, 341
SspMI	CTAG	3 cut(s)	504, 648, 657
StyD4I	CCNGG	3 cut(s)	48, 116, 702
TaaI	ACNGT	4 cut(s)	205, 434, 449, 738
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	4 cut(s)	302, 415, 624, 687
TauI	GCSGC	2 cut(s)	62, 344
TfiI	GAWTC	2 cut(s)	241, 280
Tru1I	TTAA	3 cut(s)	35, 314, 492
Tru9I	TTAA	3 cut(s)	35, 314, 492
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	3 cut(s)	275, 350, 464
TspDTI	ATGAA	3 cut(s)	17, 163, 180
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	113, 125
XapI	RAATTY	2 cut(s)	302, 687
XbaI	TCTAGA	1 cut(s)	656
XspI	CTAG	3 cut(s)	504, 648, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.