Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

18675973 .. 18677199

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCAAGCTTGGAGAAGCCGCTTGTTTTTGATAGGATTCAGGAATTCTCTTCTAGTATTTGCAGGTCAAGAAGAGCAGATGATGTTCAAGAAGCAACAAGTTGTAGCACATCCAATAGCTGCGACGGAGAGTATACAAGAGACTACTTATCCTTCAGCCATAAGACTTTGAGCTTTGGCAGGAATCACAAGGTTTTCAGAAGCAGTTTTGAATCATGGTTCTTGCCAGATGATCAATATAACTCCAAGACCAATTGCAATGAAAAAGACGTAACACGTAAGTTGCTGAACGGAATAGGATTACCAAAGTTTGTTAAGATAGTAGAAGTAGGTCCGAGGGATGGTTTGCAAAATGAGAAGAAGATAGTATCTGCAACCATAAAGATTGAGCTGATTCACATGCTGGTTTCTTCTGGGTTGTCTGTTGTTGAGGCCACTAGTTTTGTTTCACCCAAATGGGTTCCTCAGCTAGCAGATGCAAAGGATGTAATGGAAGCGGTTCGCAATCTTGACGGTAGTGCTACATTGCCTGTTCTTACACCTAATTTGAAAGGTTTTGAAGCAGCTGTTGCTGCTGGTGCTAAGCAGGTAGCAGTCTTTGCATCAGCTTCCGAGTCATTTTCAAAGGCAAACATCAATTGTAGCATTGAAGAAAGTCTCATTCGTTACCGAGCTGTTACTCGTGCTGCAAAGGAGCTTTCAATTCCTGTTCGAGGGTATGTATCATGTGCCATTGGATGTCCAGAAGAGGGAGCTATTCCGCCATCAAAAGTGGCATATGTAGCAAAACAACTCTATGACATGGGCTGCTTTGAAATATCTCTTGCCGACACGACCGGAGTTGGTACCCCAAGGACGGTTGTGCCAATGCTTGAAGCTGTGATGGTTGTTGTTCCTGTTGAGAAGCTAGCTGTCCATTTCCATGACACTTACGGGCAGTCTCTTCCAAATATTCTGGTCTCTCTTCAAATGGGGATTGGCACAGTCGACTCCTCTGTTGCAGGTTTAGGTGGGTGTCCATATGCTAAGGGAGCTTCTGGTAACGTTGCCACTGAAGATGTTGTGTACATGCTCAGTGAACTTGGTGTGCAAACCAATGTGGATTTGGCCAAGCTCCTTAAGGTTGGGGATTTCATCAGCAGGCATTTGGGTCGCACATCTGGTCCAAAGATTGCCATTGCCTCGGGTGTTAAATCTGCCGACTCCAGTGATGACTCTATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

409

Amino Acids

43.74

Weight (kDa)

6.13

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	105 - 379	1e-58	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	54, 577, 992
Acc65I	GGTACC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	845
AccI	GTMKAC	2 cut(s)	134, 987
AciI	CCGC	3 cut(s)	20, 497, 761
AclI	AACGTT	1 cut(s)	1044
AcoI	YGGCCR	1 cut(s)	1107
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	139, 1074
AfaI	GTAC	2 cut(s)	847, 1067
AfiI	CCNNNNNNNGG	4 cut(s)	341, 713, 749, 856
AflII	CTTAAG	1 cut(s)	1118
AflIII	ACRYGT	1 cut(s)	275
AhlI	ACTAGT	1 cut(s)	437
Alw26I	GTCTC	4 cut(s)	135, 662, 945, 964
Ama87I	CYCGRG	1 cut(s)	1183
AoxI	GGCC	2 cut(s)	432, 1107
ApeKI	GCWGC	5 cut(s)	120, 563, 572, 686, 807
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	498
Asp718I	GGTACC	1 cut(s)	845
AspS9I	GGNCC	2 cut(s)	332, 1163
AsuHPI	GGTGA	1 cut(s)	441
AsuNHI	GCTAGC	2 cut(s)	469, 907
AvaI	CYCGRG	1 cut(s)	1183
AvaII	GGWCC	2 cut(s)	332, 1163
BalI	TGGCCA	1 cut(s)	1109
BanI	GGYRCC	1 cut(s)	845
BauI	CACGAG	1 cut(s)	681
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	107, 559, 575, 673, 794
BccI	CCATC	3 cut(s)	335, 772, 877
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	4 cut(s)	135, 662, 945, 964
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	4 cut(s)	54, 438, 470, 908
BfrI	CTTAAG	1 cut(s)	1118
BfuAI	ACCTGC	3 cut(s)	54, 577, 992
BisI	GCNGC	6 cut(s)	20, 121, 564, 573, 687, 808
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	6 cut(s)	21, 122, 565, 574, 688, 809
Bme18I	GGWCC	2 cut(s)	332, 1163
BmeT110I	CYCGRG	1 cut(s)	1183
BmgT120I	GGNCC	2 cut(s)	332, 1163
BmiI	GGNNCC	2 cut(s)	462, 847
BmsI	GCATC	2 cut(s)	466, 611
BmtI	GCTAGC	2 cut(s)	473, 911
BpmI	CTGGAG	1 cut(s)	1189
Bpu10I	CCTNAGC	2 cut(s)	465, 1026
Bpu1102I	GCTNAGC	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	964
BsaJI	CCNNGG	3 cut(s)	335, 851, 1182
BsaWI	WCCGGW	1 cut(s)	836
Bsc4I	CCNNNNNNNGG	4 cut(s)	341, 713, 749, 856
Bse1I	ACTGG	1 cut(s)	1206
Bse3DI	GCAATG	3 cut(s)	265, 524, 1176
BseDI	CCNNGG	3 cut(s)	335, 851, 1182
BseGI	GGATG	4 cut(s)	110, 346, 490, 743
BseLI	CCNNNNNNNGG	4 cut(s)	341, 713, 749, 856
BseMI	GCAATG	3 cut(s)	265, 524, 1176
BseMII	CTCAG	2 cut(s)	479, 1087
BseNI	ACTGG	1 cut(s)	1206
BseRI	GAGGAG	1 cut(s)	982
BseXI	GCAGC	5 cut(s)	107, 559, 575, 673, 794
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	434, 1109
BshNI	GGYRCC	1 cut(s)	845
BsiEI	CGRYCG	1 cut(s)	837
BsiHKCI	CYCGRG	1 cut(s)	1183
BsiSI	CCGG	1 cut(s)	837
BslI	CCNNNNNNNGG	4 cut(s)	341, 713, 749, 856
BsmAI	GTCTC	4 cut(s)	135, 662, 945, 964
BsnI	GGCC	2 cut(s)	434, 1109
Bso31I	GGTCTC	1 cut(s)	964
BsoBI	CYCGRG	1 cut(s)	1183
Bsp1407I	TGTACA	1 cut(s)	1065
Bsp143I	GATC	1 cut(s)	232
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	3 cut(s)	20, 497, 761
BspANI	GGCC	2 cut(s)	434, 1109
BspCNI	CTCAG	2 cut(s)	478, 1086
BspLI	GGNNCC	2 cut(s)	462, 847
BspMI	ACCTGC	3 cut(s)	54, 577, 992
BspOI	GCTAGC	2 cut(s)	473, 911
BspQI	GCTCTTC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	845
BspTI	CTTAAG	1 cut(s)	1118
BspTNI	GGTCTC	1 cut(s)	964
BsrDI	GCAATG	3 cut(s)	265, 524, 1176
BsrGI	TGTACA	1 cut(s)	1065
BsrI	ACTGG	1 cut(s)	1206
BssECI	CCNNGG	3 cut(s)	335, 851, 1182
BssMI	GATC	1 cut(s)	232
BssNAI	GTATAC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	851
Bst1107I	GTATAC	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	681
Bst4CI	ACNGT	3 cut(s)	515, 859, 985
Bst6I	CTCTTC	5 cut(s)	55, 67, 741, 948, 969
BstAFI	CTTAAG	1 cut(s)	1118
BstAPI	GCANNNNNTGC	2 cut(s)	569, 599
BstAUI	TGTACA	1 cut(s)	1065
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	471, 909, 1142
BstDEI	CTNAG	5 cut(s)	465, 582, 1026, 1073, 1224
BstENI	CCTNNNNNAGG	1 cut(s)	711
BstF5I	GGATG	4 cut(s)	110, 346, 490, 743
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	4 cut(s)	135, 662, 945, 964
BstMBI	GATC	1 cut(s)	232
BstMCI	CGRYCG	1 cut(s)	837
BstMWI	GCNNNNNNNGC	6 cut(s)	569, 572, 578, 599, 782, 1031
BstNSI	RCATGY	2 cut(s)	403, 1072
BstV1I	GCAGC	5 cut(s)	107, 559, 575, 673, 794
BstZ17I	GTATAC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	434, 1109
BtsCI	GGATG	4 cut(s)	110, 346, 490, 743
BtsIMutI	CAGTG	3 cut(s)	1050, 1081, 1213
BveI	ACCTGC	3 cut(s)	54, 577, 992
Cac8I	GCNNGC	3 cut(s)	471, 909, 1142
Cfr13I	GGNCC	2 cut(s)	332, 1163
Csp6I	GTAC	2 cut(s)	846, 1066
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	6 cut(s)	216, 400, 726, 802, 923, 1069
CviQI	GTAC	2 cut(s)	846, 1066
DdeI	CTNAG	5 cut(s)	465, 582, 1026, 1073, 1224
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	1107
Eam1104I	CTCTTC	5 cut(s)	55, 67, 741, 948, 969
EarI	CTCTTC	5 cut(s)	55, 67, 741, 948, 969
EciI	GGCGGA	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	851
Eco31I	GGTCTC	1 cut(s)	964
Eco47I	GGWCC	2 cut(s)	332, 1163
Eco57I	CTGAAG	2 cut(s)	139, 1074
Eco88I	CYCGRG	1 cut(s)	1183
EcoNI	CCTNNNNNAGG	1 cut(s)	711
EcoRI	GAATTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	851
ErhI	CCWWGG	1 cut(s)	851
FaeI	CATG	6 cut(s)	219, 403, 729, 805, 926, 1072
FatI	CATG	6 cut(s)	215, 399, 725, 801, 922, 1068
FauNDI	CATATG	2 cut(s)	778, 1021
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	134, 987
Fnu4HI	GCNGC	6 cut(s)	20, 121, 564, 573, 687, 808
FokI	GGATG	4 cut(s)	97, 353, 497, 750
Fsp4HI	GCNGC	6 cut(s)	20, 121, 564, 573, 687, 808
FspBI	CTAG	4 cut(s)	54, 438, 470, 908
GluI	GCNGC	6 cut(s)	20, 121, 564, 573, 687, 808
GsuI	CTGGAG	1 cut(s)	1189
HaeIII	GGCC	2 cut(s)	434, 1109
HapII	CCGG	1 cut(s)	837
Hin1II	CATG	6 cut(s)	219, 403, 729, 805, 926, 1072
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	8 cut(s)	37, 184, 212, 394, 614, 989, 1202, 1214
HpaII	CCGG	1 cut(s)	837
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	4 cut(s)	135, 988, 1066, 1079
Hpy188I	TCNGA	3 cut(s)	200, 336, 613
Hpy188III	TCNNGA	5 cut(s)	41, 69, 89, 509, 743
Hpy8I	GTNNAC	4 cut(s)	135, 988, 1066, 1079
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	3 cut(s)	515, 859, 985
HpyCH4IV	ACGT	3 cut(s)	270, 277, 1044
HpyCH4V	TGCA	9 cut(s)	63, 258, 349, 374, 479, 602, 689, 1001, 1090
HpyF10VI	GCNNNNNNNGC	6 cut(s)	569, 572, 578, 599, 782, 1031
HpyF3I	CTNAG	5 cut(s)	465, 582, 1026, 1073, 1224
HpySE526I	ACGT	3 cut(s)	270, 277, 1044
Hsp92II	CATG	6 cut(s)	219, 403, 729, 805, 926, 1072
KpnI	GGTACC	1 cut(s)	849
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	4 cut(s)	694, 752, 1031, 1119
Lsp1109I	GCAGC	5 cut(s)	107, 559, 575, 673, 794
LweI	GCATC	2 cut(s)	466, 611
MaeI	CTAG	4 cut(s)	54, 438, 470, 908
MaeII	ACGT	3 cut(s)	270, 277, 1044
MaeIII	GTNAC	4 cut(s)	271, 665, 676, 1040
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MfeI	CAATTG	2 cut(s)	253, 637
MlsI	TGGCCA	1 cut(s)	1109
MluCI	AATT	5 cut(s)	44, 253, 544, 637, 702
MluNI	TGGCCA	1 cut(s)	1109
MlyI	GAGTC	4 cut(s)	623, 983, 1196, 1208
MnlI	CCTC	7 cut(s)	330, 424, 474, 707, 742, 1003, 1192
Mox20I	TGGCCA	1 cut(s)	1109
MroXI	GAANNNNTTC	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	1109
MseI	TTAA	3 cut(s)	315, 1119, 1191
MslI	CAYNNNNRTG	2 cut(s)	454, 921
Msp20I	TGGCCA	1 cut(s)	1109
MspA1I	CMGCKG	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	1118
MspI	CCGG	1 cut(s)	837
MunI	CAATTG	2 cut(s)	253, 637
MwoI	GCNNNNNNNGC	6 cut(s)	569, 572, 578, 599, 782, 1031
NdeI	CATATG	2 cut(s)	778, 1021
NdeII	GATC	1 cut(s)	232
NheI	GCTAGC	2 cut(s)	469, 907
NlaIII	CATG	6 cut(s)	219, 403, 729, 805, 926, 1072
NlaIV	GGNNCC	2 cut(s)	462, 847
NspI	RCATGY	2 cut(s)	403, 1072
PciSI	GCTCTTC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	37, 184, 212, 394
PkrI	GCNGC	6 cut(s)	21, 122, 565, 574, 688, 809
PleI	GAGTC	4 cut(s)	622, 983, 1196, 1208
PpsI	GAGTC	4 cut(s)	622, 983, 1196, 1208
Ppu21I	YACGTR	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	1044
PspN4I	GGNNCC	2 cut(s)	462, 847
PspPI	GGNCC	2 cut(s)	332, 1163
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	847, 1067
RsaNI	GTAC	2 cut(s)	846, 1066
RseI	CAYNNNNRTG	2 cut(s)	454, 921
SalI	GTCGAC	1 cut(s)	986
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	315, 1119, 1191
SatI	GCNGC	6 cut(s)	20, 121, 564, 573, 687, 808
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	2 cut(s)	332, 1163
SchI	GAGTC	4 cut(s)	623, 983, 1196, 1208
SfaNI	GCATC	2 cut(s)	466, 611
SinI	GGWCC	2 cut(s)	332, 1163
SmiMI	CAYNNNNRTG	2 cut(s)	454, 921
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	5 cut(s)	44, 253, 544, 637, 702
SsiI	CCGC	3 cut(s)	20, 497, 761
SspI	AATATT	1 cut(s)	952
SspMI	CTAG	4 cut(s)	54, 438, 470, 908
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	3 cut(s)	515, 859, 985
TaiI	ACGT	3 cut(s)	273, 280, 1047
TaqI	TCGA	2 cut(s)	712, 987
TasI	AATT	5 cut(s)	44, 253, 544, 637, 702
TatI	WGTACW	1 cut(s)	1065
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	4 cut(s)	37, 184, 212, 394
Tru1I	TTAA	3 cut(s)	315, 1119, 1191
Tru9I	TTAA	3 cut(s)	315, 1119, 1191
TscAI	CASTG	3 cut(s)	1057, 1081, 1213
TseI	GCWGC	5 cut(s)	120, 563, 572, 686, 807
TspDTI	ATGAA	2 cut(s)	276, 1123
TspGWI	ACGGA	2 cut(s)	141, 306
TspRI	CASTG	3 cut(s)	1057, 1081, 1213
Vha464I	CTTAAG	1 cut(s)	1118
VpaK11BI	GGWCC	2 cut(s)	332, 1163
XagI	CCTNNNNNAGG	1 cut(s)	711
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	2 cut(s)	403, 1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1102
XmiI	GTMKAC	2 cut(s)	134, 987
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	4 cut(s)	54, 438, 470, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.