Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000717

Physical Location & Seq

Genomic Coordinates Reverse (-)

13211362 .. 13215410

Gene Structure 4049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGATGAACAAGGTATCAAGACATATGATGAGGAATATGTATTACGCAGTTGCACGCGGAGGAGGCCTCGAGCCCTGCTATTTGTCAAGTCCTCGTCGTCATTTCACCTCTTCAATCAATAAGCCGGTTTTAGGAAACATTCCAGAGTTTGTAAAGATAGTGGAAGTGGGTCCGAGAGATGGACTCCAGAATGAGAAGCAGATTGTTCCTACTGACGTCAAGGTTCGGTTGATACAAATGCTGGTTTCCTCCGGCCTCACTGTTGTTGAGGCTACCAGTTTTGTCTCTCCCAAATGGGTTCCGCAGCTGGCAGATGCAAAGGATGTAATGGAGGCGATTCGGAATGTGGGAGGTGCTAGATTTCCCGTTTTAACCCCTAATCTCAAAGGTTTTGAGGCAGCTGTCGCTGCTGGTGCAAAGGAAGTTGCCATCTTTGCTTCAGCTTCTGAGTCTTTTTCAAAATCAAATATAAACTGCAGTATTGAAGACAGTCTCAGACGTTACCGTGATGTTGCTAGTGCCGCTAGAAAGCTTTCTATTCCTGTTCGTGGATATATATCATGTGTTGTCGGCTGTCCAACGGAAGGAGCTGTACCCCCATCTCAAGTAGCATATGTGGCCAAAGAACTGTATGATATGGGTTGCTTTGACATTTCTCTTGGTGATACAATTGGTGTTGGTACTCCAGGTACCGTCATTCCAATGCTTGAAGAGGTGATTGATGTGGTCCCCACTGAAAACCTTGCTGTCCATTTCCATGACACTTATGGCCAAGCTCTTTCAAACATACTAGTATCTCTTCAGATGGGCATCAGCACAGTGGATTCATCAGTTTCTGGTCTTGGGGGTTGTCCATATGCTAAAGGTGCTTCTGGCAATGTTGCCACTGAGGATGTTGTGTACATGCTTAATGGACTTGGAGTGAAGACCAACATAGATCTTCAAAAGCTCATGTTGGCTGGGGACTTTATCTGCAAGCACTTGGGGCGCTCACCTGGTTCAAAGACAGCTGTTGCCTTGAGTAAAGTCCCTGCTCATACCTCTAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00072 ko00280 ko00281 ko00650 ko01100 ko04146 map00072 map00280 map00281 map00650 map01100 map04146

Pfam Domains

Protein Families

HMGL-like

Protein Analysis

351

Amino Acids

37.25

Weight (kDa)

8.39

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	51 - 324	2.9e-58	HMGL-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26800 AT2G26800 AT2G26800 AT2G26800 AT2G26800
fragaria_vesca	FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_1g30200 FvH4_5g27390
malus_domestica	MD03G1157200.v1.1 MD11G1183500.v1.1 MD12G1006800.v1.1 MD12G1094600.v1.1 MD15G1420700.v1.1
prunus_persica	Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.4G270500_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1 Prupe.7G031100_v2.0.a1
pyrus_communis	pycom12561g00230 pycom13g09650 pycom5153684g00060
rosa_chinensis	RchiOBHm_Chr3g0491291 RchiOBHm_Chr3g0491331 RchiOBHm_Chr3g0491351 RchiOBHm_Chr7g0218661
rosa_laevigata	RLG00000022846
rosa_multiflora	Rmu_co8125388.1_g000001 Rmu_co8321319.1_g000001 Rmu_sc0000293.1_g000014 Rmu_sc0000293.1_g000032 Rmu_sc0001301.1_g000016 Rmu_sc0005784.1_g000018 Rmu_sc0014162.1_g000014 Rmu_sc0014162.1_g000023
rosa_roxburghii	Rroxscaffold_2G00115200 Rroxscaffold_3G00240560 Rroxscaffold_6G00392960 Rroxscaffold_6G00392970 Rroxscaffold_6G00392980
rosa_rugosa	Rorug03G0248700 Rorug07G0179100
rosa_samantha	Rh3AG298000 Rh3AG298300 Rh3BG334100 Rh3CG331100 Rh3DG331900 Rh3DG332300 Rh3DG332600 Rh7AG320300 Rh7BG313100 Rh7CG337200 Rh7DG319300
rosa_wichuraiana	Rw3G026240 Rw3G026310 Rw7G026890 Rw7G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
Acc65I	GGTACC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	689
AccII	CGCG	1 cut(s)	57
AciI	CCGC	3 cut(s)	57, 302, 522
AcoI	YGGCCR	2 cut(s)	618, 769
AcuI	CTGAAG	2 cut(s)	423, 785
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	4 cut(s)	594, 682, 691, 902
AfiI	CCNNNNNNNGG	4 cut(s)	131, 179, 548, 584
AgsI	TTSAA	7 cut(s)	114, 459, 485, 710, 783, 944, 1002
AhlI	ACTAGT	1 cut(s)	790
AjnI	CCWGG	2 cut(s)	685, 994
AluBI	AGCT	9 cut(s)	307, 401, 443, 532, 590, 776, 949, 1010, 1048
AluI	AGCT	9 cut(s)	307, 401, 443, 532, 590, 776, 949, 1010, 1048
Alw26I	GTCTC	2 cut(s)	289, 497
AlwNI	CAGNNNCTG	2 cut(s)	446, 836
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	4 cut(s)	64, 253, 618, 769
ApeKI	GCWGC	3 cut(s)	304, 398, 407
Asp700I	GAANNNNTTC	1 cut(s)	532
Asp718I	GGTACC	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	990
AspS9I	GGNCC	2 cut(s)	170, 727
AsuHPI	GGTGA	4 cut(s)	97, 674, 727, 984
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	170, 727
BalI	TGGCCA	2 cut(s)	620, 771
BanI	GGYRCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	75
BarI	GAAGNNNNNNTAC	2 cut(s)	576, 608
BbsI	GAAGAC	2 cut(s)	492, 932
BbvI	GCAGC	3 cut(s)	316, 394, 410
BccI	CCATC	4 cut(s)	173, 437, 607, 799
BciT130I	CCWGG	2 cut(s)	687, 996
BcoDI	GTCTC	2 cut(s)	289, 497
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	4 cut(s)	357, 516, 525, 791
BfmI	CTRYAG	1 cut(s)	475
BfoI	RGCGCY	1 cut(s)	991
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	4 cut(s)	305, 399, 408, 522
BlsI	GCNGC	4 cut(s)	306, 400, 409, 523
Bme1390I	CCNGG	2 cut(s)	687, 996
Bme18I	GGWCC	2 cut(s)	170, 727
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	170, 727
BmiI	GGNNCC	4 cut(s)	171, 300, 691, 729
BmrFI	CCNGG	2 cut(s)	687, 996
BmsI	GCATC	2 cut(s)	304, 819
BpiI	GAAGAC	2 cut(s)	492, 932
BplI	GAGNNNNNCTC	4 cut(s)	51, 83, 168, 200
BpmI	CTGGAG	2 cut(s)	170, 669
BpuEI	CTTGAG	2 cut(s)	588, 1039
BsaBI	GATNNNNATC	2 cut(s)	556, 809
BsaHI	GRCGYC	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 179, 548, 584
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	883
Bse8I	GATNNNNATC	2 cut(s)	556, 809
BseBI	CCWGG	2 cut(s)	687, 996
BseGI	GGATG	2 cut(s)	328, 898
BseJI	GATNNNNATC	2 cut(s)	556, 809
BseLI	CCNNNNNNNGG	4 cut(s)	131, 179, 548, 584
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	3 cut(s)	438, 508, 879
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	316, 394, 410
BseYI	CCCAGC	1 cut(s)	959
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	66, 255, 620, 771
BshNI	GGYRCC	1 cut(s)	689
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	125, 252
BslFI	GGGAC	3 cut(s)	713, 977, 1013
BslI	CCNNNNNNNGG	4 cut(s)	131, 179, 548, 584
BsmAI	GTCTC	2 cut(s)	289, 497
BsmFI	GGGAC	3 cut(s)	713, 977, 1013
BsnI	GGCC	4 cut(s)	66, 255, 620, 771
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	1 cut(s)	937
BspACI	CCGC	3 cut(s)	57, 302, 522
BspANI	GGCC	4 cut(s)	66, 255, 620, 771
BspCNI	CTCAG	3 cut(s)	439, 507, 880
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	171, 300, 691, 729
BspMAI	CTGCAG	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	124
BssMI	GATC	1 cut(s)	937
BssNI	GRCGYC	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	687, 996
Bst4CI	ACNGT	6 cut(s)	262, 491, 506, 630, 694, 820
Bst6I	CTCTTC	3 cut(s)	115, 705, 804
BstACI	GRCGYC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	900
BstC8I	GCNNGC	3 cut(s)	55, 309, 977
BstDEI	CTNAG	4 cut(s)	447, 494, 888, 1044
BstF5I	GGATG	2 cut(s)	328, 898
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	991
BstHHI	GCGC	1 cut(s)	990
BstKTI	GATC	1 cut(s)	940
BstMAI	GTCTC	2 cut(s)	289, 497
BstMBI	GATC	1 cut(s)	937
BstMWI	GCNNNNNNNGC	9 cut(s)	63, 404, 407, 413, 434, 521, 617, 866, 985
BstNI	CCWGG	2 cut(s)	687, 996
BstNSI	RCATGY	1 cut(s)	907
BstSCI	CCNGG	2 cut(s)	685, 994
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	316, 394, 410
BstV2I	GAAGAC	2 cut(s)	492, 932
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	4 cut(s)	66, 255, 620, 771
BtsCI	GGATG	2 cut(s)	328, 898
BtsIMutI	CAGTG	4 cut(s)	258, 732, 825, 885
Cac8I	GCNNGC	3 cut(s)	55, 309, 977
CaiI	CAGNNNCTG	2 cut(s)	446, 836
CfoI	GCGC	1 cut(s)	990
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	170, 727
CsiI	ACCWGGT	1 cut(s)	994
Csp6I	GTAC	4 cut(s)	593, 681, 690, 901
CviAII	CATG	4 cut(s)	561, 758, 904, 952
CviQI	GTAC	4 cut(s)	593, 681, 690, 901
DdeI	CTNAG	4 cut(s)	447, 494, 888, 1044
DpnI	GATC	1 cut(s)	939
DpnII	GATC	1 cut(s)	937
EaeI	YGGCCR	2 cut(s)	618, 769
Eam1104I	CTCTTC	3 cut(s)	115, 705, 804
EarI	CTCTTC	3 cut(s)	115, 705, 804
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	170, 727
Eco57I	CTGAAG	2 cut(s)	423, 785
Eco88I	CYCGRG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	685, 994
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	4 cut(s)	564, 761, 907, 955
FaqI	GGGAC	3 cut(s)	713, 977, 1013
FatI	CATG	4 cut(s)	560, 757, 903, 951
FauNDI	CATATG	3 cut(s)	24, 613, 856
Fnu4HI	GCNGC	4 cut(s)	305, 399, 408, 522
FokI	GGATG	2 cut(s)	335, 905
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	4 cut(s)	305, 399, 408, 522
FspBI	CTAG	4 cut(s)	357, 516, 525, 791
GlaI	GCGC	1 cut(s)	989
GluI	GCNGC	4 cut(s)	305, 399, 408, 522
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	2 cut(s)	170, 669
HaeII	RGCGCY	1 cut(s)	991
HaeIII	GGCC	4 cut(s)	66, 255, 620, 771
HapII	CCGG	2 cut(s)	125, 252
HhaI	GCGC	1 cut(s)	990
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	564, 761, 907, 955
Hin6I	GCGC	1 cut(s)	988
HinP1I	GCGC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	4 cut(s)	183, 337, 449, 824
HpaII	CCGG	2 cut(s)	125, 252
HphI	GGTGA	4 cut(s)	97, 674, 727, 984
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188I	TCNGA	5 cut(s)	174, 342, 448, 497, 804
Hpy188III	TCNNGA	3 cut(s)	18, 143, 187
Hpy8I	GTNNAC	1 cut(s)	901
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	6 cut(s)	262, 491, 506, 630, 694, 820
HpyCH4IV	ACGT	2 cut(s)	216, 499
HpyCH4V	TGCA	5 cut(s)	53, 317, 416, 477, 975
HpyF10VI	GCNNNNNNNGC	9 cut(s)	63, 404, 407, 413, 434, 521, 617, 866, 985
HpyF3I	CTNAG	4 cut(s)	447, 494, 888, 1044
HpySE526I	ACGT	2 cut(s)	216, 499
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	4 cut(s)	564, 761, 907, 955
HspAI	GCGC	1 cut(s)	988
KpnI	GGTACC	1 cut(s)	693
Kzo9I	GATC	1 cut(s)	937
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	3 cut(s)	316, 394, 410
LweI	GCATC	2 cut(s)	304, 819
MabI	ACCWGGT	1 cut(s)	994
MaeI	CTAG	4 cut(s)	357, 516, 525, 791
MaeII	ACGT	2 cut(s)	216, 499
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	1 cut(s)	939
MboI	GATC	1 cut(s)	937
MboII	GAAGA	6 cut(s)	102, 497, 722, 791, 932, 937
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	2 cut(s)	620, 771
MluCI	AATT	1 cut(s)	669
MluNI	TGGCCA	2 cut(s)	620, 771
MlyI	GAGTC	2 cut(s)	177, 458
MmeI	TCCRAC	1 cut(s)	602
Mox20I	TGGCCA	2 cut(s)	620, 771
MroXI	GAANNNNTTC	1 cut(s)	532
MscI	TGGCCA	2 cut(s)	620, 771
MseI	TTAA	2 cut(s)	371, 909
MslI	CAYNNNNRTG	2 cut(s)	701, 756
Msp20I	TGGCCA	2 cut(s)	620, 771
MspA1I	CMGCKG	3 cut(s)	307, 401, 1010
MspI	CCGG	2 cut(s)	125, 252
MspR9I	CCNGG	2 cut(s)	687, 996
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	2 cut(s)	687, 996
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	9 cut(s)	63, 404, 407, 413, 434, 521, 617, 866, 985
NdeI	CATATG	3 cut(s)	24, 613, 856
NdeII	GATC	1 cut(s)	937
NlaIII	CATG	4 cut(s)	564, 761, 907, 955
NlaIV	GGNNCC	4 cut(s)	171, 300, 691, 729
NspI	RCATGY	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	337, 824
PkrI	GCNGC	4 cut(s)	306, 400, 409, 523
PleI	GAGTC	2 cut(s)	177, 457
PpsI	GAGTC	2 cut(s)	177, 457
Psp6I	CCWGG	2 cut(s)	685, 994
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	2 cut(s)	685, 994
PspN4I	GGNNCC	4 cut(s)	171, 300, 691, 729
PspPI	GGNCC	2 cut(s)	170, 727
PspXI	VCTCGAGB	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	479
PstNI	CAGNNNCTG	2 cut(s)	446, 836
PsuI	RGATCY	1 cut(s)	937
PvuII	CAGCTG	3 cut(s)	307, 401, 1010
RsaI	GTAC	4 cut(s)	594, 682, 691, 902
RsaNI	GTAC	4 cut(s)	593, 681, 690, 901
RseI	CAYNNNNRTG	2 cut(s)	701, 756
SaqAI	TTAA	2 cut(s)	371, 909
SatI	GCNGC	4 cut(s)	305, 399, 408, 522
Sau3AI	GATC	1 cut(s)	937
Sau96I	GGNCC	2 cut(s)	170, 727
SchI	GAGTC	2 cut(s)	177, 458
ScrFI	CCNGG	2 cut(s)	687, 996
SduI	GDGCHC	1 cut(s)	75
SexAI	ACCWGGT	1 cut(s)	994
SfaNI	GCATC	2 cut(s)	304, 819
SfcI	CTRYAG	1 cut(s)	475
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	2 cut(s)	170, 727
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	701, 756
SmlI	CTYRAG	3 cut(s)	68, 603, 1018
SmoI	CTYRAG	3 cut(s)	68, 603, 1018
SpeI	ACTAGT	1 cut(s)	790
Sse9I	AATT	1 cut(s)	669
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	3 cut(s)	57, 302, 522
SspMI	CTAG	4 cut(s)	357, 516, 525, 791
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	685, 994
TaaI	ACNGT	6 cut(s)	262, 491, 506, 630, 694, 820
TaiI	ACGT	2 cut(s)	219, 502
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	669
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	2 cut(s)	337, 824
Tru1I	TTAA	2 cut(s)	371, 909
Tru9I	TTAA	2 cut(s)	371, 909
TscAI	CASTG	4 cut(s)	265, 739, 825, 892
TseI	GCWGC	3 cut(s)	304, 398, 407
TspDTI	ATGAA	2 cut(s)	20, 816
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	4 cut(s)	265, 739, 825, 892
VpaK11BI	GGWCC	2 cut(s)	170, 727
XceI	RCATGY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XhoI	CTCGAG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	4 cut(s)	357, 516, 525, 791
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.